mRNA_E-siliculosus-1a_M_contig82.16432.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16432.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16432.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:590927..591540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size369
Model size614
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936247.2008646-UTR-E-siliculosus-1a_M_contig82:590926..5911711622936247.2008646-UTR-E-siliculosus-1a_M_contig82:590926..591171Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 590927..591171 +
1696250989.8821354-UTR-E-siliculosus-1a_M_contig82:590926..5911711696250989.8821354-UTR-E-siliculosus-1a_M_contig82:590926..591171Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 590927..591171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936247.2257783-CDS-E-siliculosus-1a_M_contig82:591171..5915401622936247.2257783-CDS-E-siliculosus-1a_M_contig82:591171..591540Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 591172..591540 +
1696250989.8959687-CDS-E-siliculosus-1a_M_contig82:591171..5915401696250989.8959687-CDS-E-siliculosus-1a_M_contig82:591171..591540Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 591172..591540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16432.1prot_E-siliculosus-1a_M_contig82.16432.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 591172..591540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16432.1

>prot_E-siliculosus-1a_M_contig82.16432.1 ID=prot_E-siliculosus-1a_M_contig82.16432.1|Name=mRNA_E-siliculosus-1a_M_contig82.16432.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=123bp
MNVRSVWCYAMKGGRGRLGACGIGRSSQPCYHRSSPNRHPSARFHRKNGI
LERVLRTRVGGGGGCFLLCSMLCCRTHVSRYIVGHRNTHKRSASITDTTY
ENLAQRHIVSDRLTPSAKAVYGL
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mRNA from alignment at E-siliculosus-1a_M_contig82:590927..591540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16432.1 ID=mRNA_E-siliculosus-1a_M_contig82.16432.1|Name=mRNA_E-siliculosus-1a_M_contig82.16432.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=614bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:590927..591540+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGGGCAGCTGCGGGGAGAGTGGGGAAAGAATGGGACGAAAAAAAAACAAA
AAAACATTAAAGCAAAACACAAGTATGTGTGCGAGAGAACTCACGAAAGA
CACTCGCTTCGGCCTATTGCGCACTAAAGCAGACATACCCGTGGTGTACT
GGCACTAAAGAGACTCAACGGGGCTAAAGGGGCTTGACAACCCTGTTACC
ACACGGCGACCACATCGTATTACGTTACCAACTCGATGATAGAAGATGAA
TGTACGGTCTGTCTGGTGTTACGCCATGAAGGGGGGGCGAGGAAGGCTTG
GTGCATGCGGAATCGGGCGGAGCTCCCAACCGTGCTACCACCGCAGCTCC
CCGAACCGGCACCCTTCTGCACGATTCCACCGAAAAAACGGTATCCTTGA
ACGTGTCTTGCGCACGCGAGTgggggggGGGGGCGGCTGCTTTCTCCTCT
GTTCCATGTTGTGCTGTCGTACACATGTGTCTCGGTACATCGTGGGACAT
CGCAACACACATAAACGTTCCGCAAGTATCACGGACACAACGTACGAGAA
CTTAGCGCAAAGGCATATTGTATCGGACAGACTAACACCAAGCGCCAAGG
CTGTATACGGTCTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:590927..591540+

>mRNA_E-siliculosus-1a_M_contig82.16432.1 ID=mRNA_E-siliculosus-1a_M_contig82.16432.1|Name=mRNA_E-siliculosus-1a_M_contig82.16432.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=738bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:590927..591540+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAATGTACGGTCTGTCTGGTGTTACGCCATGAAGGGGGGGCGAGGAAG
GCTTGGTGCATGCGGAATCGGGCGGAGCTCCCAACCGTGCTACCACCGCA
GCTCCCCGAACCGGCACCCTTCTGCACGATTCCACCGAAAAAACGGTATC
CTTGAACGTGTCTTGCGCACGCGAGTgggggggGGGGGCGGCTGCTTTCT
CCTCTGTTCCATGTTGTGCTGTCGTACACATGTGTCTCGGTACATCGTGG
GACATCGCAACACACATAAACGTTCCGCAAGTATCACGGACACAACGTAC
GAGAACTTAGCGCAAAGGCATATTGTATCGGACAGACTAACACCAAGCGC
CAAGGCTGTATACGGTCTTATGAATGTACGGTCTGTCTGGTGTTACGCCA
TGAAGGGGGGGCGAGGAAGGCTTGGTGCATGCGGAATCGGGCGGAGCTCC
CAACCGTGCTACCACCGCAGCTCCCCGAACCGGCACCCTTCTGCACGATT
CCACCGAAAAAACGGTATCCTTGAACGTGTCTTGCGCACGCGAGTggggg
ggGGGGGCGGCTGCTTTCTCCTCTGTTCCATGTTGTGCTGTCGTACACAT
GTGTCTCGGTACATCGTGGGACATCGCAACACACATAAACGTTCCGCAAG
TATCACGGACACAACGTACGAGAACTTAGCGCAAAGGCATATTGTATCGG
ACAGACTAACACCAAGCGCCAAGGCTGTATACGGTCTT
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