mRNA_E-siliculosus-1a_M_contig82.16427.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16427.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16427.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: D7FWH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH0_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 9.590e-126
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 2 
Query:   83 MRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEEGKPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTGGELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKPLLLDN 646
            MRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNE GK FLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLK+PPTGGELAVWPLAVRSRWDF+RHAETLSHLTVQ EEGQALLRRKLPPPRVIKVAPGDLV+LCVQRPHAAQGFPMGTRVSVQSFLTFEKGK LLLDN
Sbjct:    1 MRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEAGKAFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKVPPTGGELAVWPLAVRSRWDFFRHAETLSHLTVQGEEGQALLRRKLPPPRVIKVAPGDLVLLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKALLLDN 188
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BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: A0A836CMD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD3_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.830e-74
Identity = 124/215 (57.67%), Postives = 154/215 (71.63%), Query Frame = 2 
Query:    2 SVGKPFNVAASEGPESVAAYFDGALSNMRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEEGKPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTGGELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKPLLLDN 646
            S+  PFNVA  +GPE+V AYF  A +  R  R     A       PLL P+D+LRLELDE+WP GA   ++  G+ FL G+ R+MRGPTR + GF+HVD+LAP+  +RG FSAN YL++PP GG LAV+PLAVR+RWDFYRHA TLS L  Q    Q  LRR LPPP  ++ APGDLV+LC QRPHAA+GFP+GTRVS+QSF+T E+G+ L LD 
Sbjct:  101 SISVPFNVALGKGPEAVEAYFAAARALQRRLR-----APPAPGAPPLLPPIDQLRLELDELWPHGARAARDARGRAFLPGLPRIMRGPTRSLAGFVHVDDLAPLRAARGLFSANAYLRMPPAGGALAVYPLAVRTRWDFYRHAATLSGLMGQGAAAQDALRRALPPPLRVRPAPGDLVLLCAQRPHAAEGFPVGTRVSMQSFVTHERGQALTLDT 310
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BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: W7TSJ1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ1_9STRA)

HSP 1 Score: 234 bits (598), Expect = 4.940e-69
Identity = 117/223 (52.47%), Postives = 165/223 (73.99%), Query Frame = 2 
Query:   11 KPFNVAAS-EGPESVAAYFDGALSNMRWWRDN--------GGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKN-EEGKPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTGG-ELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKPLLLDN 646
            +P+N+ AS    ++  AYFDGAL+ MR  R+          GE  +     P+LGPLDKLRLELDE++P+GA+V K+ ++G+PF+AG+ARVM+GPTR++EGF+H D++ P+    G FSAN+YL++P TGG EL ++ L VRSR++FY++A TL+ LT   E GQ +LR +LP P++IK   GDL+++C QRPHA  GFP+GTRVS+QSF++ +KGKPL LDN
Sbjct:   96 QPYNMVASLRDKKAEKAYFDGALACMRELREGISSRDAGLAGEGAEHASTLPVLGPLDKLRLELDEIFPQGATVTKHPKDGRPFVAGLARVMQGPTRHLEGFIHCDDIHPLSPDEGLFSANLYLQLPGTGGGELLIYDLEVRSRFEFYQNASTLALLTTAGEAGQDILRARLPKPKMIKPVAGDLILICAQRPHAVAGFPLGTRVSIQSFISHKKGKPLQLDN 318
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BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: A0A7S2F4Q8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4Q8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.770e-61
Identity = 105/207 (50.72%), Postives = 141/207 (68.12%), Query Frame = 2 
Query:   44 ESVAAYFDGALSNMRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEE-GKPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTGGELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPP-----PRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKPLLLDN 646
            E +  Y D A +++ W+R     +   +  +  L PLDKLRLELDE W  GA+V K++  G+PFL GV R+  GPT   +GF+HVD+LAP+ + +G FSAN+YL++PP GGEL +WP+A+R+ WDFYRHA+TLS LTV     Q  LR  L       P V+    GDL++LCVQRPHA QG PMG+RVS+QSF+T  + +PL+LDN
Sbjct:   49 EVMEQYLDDAEASINWFRYGPASSRHIEEGTLRLSPLDKLRLELDEQWAHGATVLKDQRTGRPFLPGVGRITHGPTLGPDGFIHVDDLAPLTKQKGLFSANIYLEVPPQGGELQIWPVALRNNWDFYRHADTLSMLTVPDLPMQRRLRSILQELDGGSPLVVHPEVGDLILLCVQRPHAVQGIPMGSRVSIQSFITHVQNQPLVLDN 255
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BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: A0A7S2ENC7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENC7_TRICV)

HSP 1 Score: 207 bits (526), Expect = 3.180e-58
Identity = 113/219 (51.60%), Postives = 143/219 (65.30%), Query Frame = 2 
Query:   14 PFNVAASEG-PESVAAYFDGA---LSNMRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEEG--KPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTG----GELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKPLLL 640
            P+NVA S G PE + +YF+G     S+ R  +  G          P L P+DKLRLELDE WP GA + +  EG  +PF  G+ RVM GPTR+  GF+HVDELAP+ E RG FSAN+YL++P +     G+L +WPL VRSRWD+Y++A  LS LT Q  E Q  LR  L  P+V+KV PGDLV+LCVQRPHAA GF  GTRVS+Q F+ +   +  LL
Sbjct:  116 PYNVACSSGRPEDIDSYFEGVQKEFSHRRATQIKGAVGENNFITQPRLWPMDKLRLELDEAWPGGAGLARETEGSKRPFGGGLPRVMAGPTRWQRGFIHVDELAPLSEVRGLFSANIYLQLPCSSESDEGDLHIWPLGVRSRWDWYKNAILLSGLTSQDAEMQVRLRSDLGTPKVVKVEPGDLVLLCVQRPHAAVGFRNGTRVSLQCFVQYNGPEKRLL 334
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: A0A2R5GMH1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMH1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.570e-55
Identity = 105/222 (47.30%), Postives = 142/222 (63.96%), Query Frame = 2 
Query:    2 SVGKPFNVAASEGPESVAAYFDGALSNMRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEEG--KPFLAGVARVMR-----GPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTGGELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMG-TRVSVQSFLTFEKGKPLLLD 643
            +VG P NVA +   + + AYF  ++  MR WR +      ++     +GP+DK RLELDE+W EG  + + + G  +PF AGV R+MR      P R+  GF HVDELA M   RG FSAN+YL+  P+GGEL +WP+   SRWDFYR+A TLS   +Q  + QA LR +LP P  +KV PGDLV++C QRPH  +G  +G  RVS+Q FL +E+G+PL L+
Sbjct:  105 AVGTPHNVAVAN--DELEAYFGNSVEAMRKWRYH------REDGVLAMGPMDKFRLELDEIWTEGCLLSREKGGDRQPFQAGVPRIMRPASRYDPARWTRGFAHVDELAIMSPDRGLFSANIYLRNAPSGGELQIWPVTFASRWDFYRNAPTLSLALLQDAQAQAALRERLPDPVTVKVRPGDLVLICTQRPHGVRGPVVGGPRVSIQGFLQYERGQPLRLE 318
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BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: K8Z8S2_NANGC (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z8S2_NANGC)

HSP 1 Score: 206 bits (525), Expect = 3.600e-55
Identity = 104/204 (50.98%), Postives = 148/204 (72.55%), Query Frame = 2 
Query:   11 KPFNVAAS-EGPESVAAYFDGALSNMRWWRDN--------GGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKN-EEGKPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTGG-ELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTR 589
            +P+N+ AS    ++  AYFDGAL+ MR  R+          GE  +     P+LGPLDKLRLELDE++P+GA+V K+ ++G+PF+AG+ARVM+GPTR++EGF+H D++ P+    G FSAN+YL++P TGG EL ++ L VRSR++FY++A TL+ LT   E GQ +LR +LP P++IK   GDL+++C QRPHA  GFP+GTR
Sbjct:   62 QPYNMVASLRDKKAEKAYFDGALACMRELREGISSRDAGLAGEGAEHASTLPVLGPLDKLRLELDEIFPQGATVTKHPKDGRPFVAGLARVMQGPTRHLEGFIHCDDIHPLSPDEGLFSANLYLQLPGTGGGELLIYDLEVRSRFEFYQNASTLALLTTAGEAGQDILRARLPKPKMIKPVAGDLILICAQRPHAVAGFPLGTR 265
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: A0A7S2UCX0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCX0_9STRA)

HSP 1 Score: 197 bits (501), Expect = 8.880e-55
Identity = 113/221 (51.13%), Postives = 145/221 (65.61%), Query Frame = 2 
Query:   14 PFNVAASEGPES-VAAYFDGALSNMRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEEGK--PFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPP----TGGELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKP---LLLDN 646
            P+NVA+S G +  V  YF+G  + +R  R        Q H S  L PLDK RLELDE WPEGA + +   GK  PF  G+ RVM GPTR+ +GF+HVDE+ P+  SRG FSAN+YL++P     + G L VWPL +RSRWD+Y++A  LS L++Q  E Q  LR +L  P++I V PGDLV+LCVQRPHAA GF  GTRVS+Q F  F+   P   LL+D+
Sbjct:  113 PYNVASSSGKKKDVDNYFEGVQTELRNRR--------QGHDS--LWPLDKFRLELDEAWPEGAGLARETGGKKRPFSGGLPRVMLGPTRWKKGFIHVDEMGPLHPSRGLFSANIYLQLPDDTDASSGALHVWPLGIRSRWDWYKNALLLSGLSMQDPEMQVRLRSELLEPQIIHVEPGDLVLLCVQRPHAAVGFKTGTRVSLQCF--FQHNGPDERLLIDS 321
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: A0A7S2WJU7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJU7_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.090e-54
Identity = 105/225 (46.67%), Postives = 143/225 (63.56%), Query Frame = 2 
Query:   14 PFNVAASEGP-ESVAAYFDGALSNMRWWRDN--GGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEEG--KPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPP--------TGGELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEK-GKPLLLDN 646
            PFNVA S G  E + AYF+G    ++  R      +      + P L PLDK RLELDE W  GA + +   G  +PF AG+ R+M GPTR+  G++HVDE+AP+ E+ G FSAN+YL++P           G+L +WPL +RSRWD+Y++A  LS L+ Q  E Q  LR++L  P++I++ PGDLV+LCVQRPHAA GF  GTRVS+Q F+      K LL+D+
Sbjct:  116 PFNVACSSGKKEDIDAYFEGVQMELQNRRHKIITTDPSSSSRRIPQLWPLDKFRLELDEAWHGGAGLARESGGDKRPFSAGLPRIMFGPTRWNRGYIHVDEMAPLSENEGLFSANIYLQLPEHSSSSENFNDGDLIIWPLGIRSRWDWYKNAILLSGLSTQDPESQVRLRKELGEPQIIRLEPGDLVLLCVQRPHAAIGFDKGTRVSLQGFIQHNGIDKRLLIDS 340
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Match: A0A7S0BX36_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX36_9STRA)

HSP 1 Score: 195 bits (496), Expect = 6.780e-54
Identity = 110/230 (47.83%), Postives = 146/230 (63.48%), Query Frame = 2 
Query:   14 PFNVAASEGPES-VAAYFDGALSNMRWWR-DNGGEAGQQQHQSPL-LGPLDKLRLELDEVWPEGASVRKNEEG--KPFLAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPT-------------GGELAVWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDLVVLCVQRPHAAQGFPMGTRVSVQSFLTFEK-GKPLLLDN 646
            P+NVA + G +  +  YF G  S +   R +NGG+ G+ +   PL L PLDKLRLELDE WP GA + +   G  +PF  G+ RV+ GPTR+  GF+HVDEL  + E  G FSAN+YL++P               GG+L +WPL++RSRWD+YR+A  LS LT+Q  E Q  LR+ L PP +I V PGDLV+LCVQRPHAA GF  G RVS+Q F+      + L++D+
Sbjct:  105 PYNVACASGEKKDIDNYFSGVRSELHSRRGNNGGKRGKDECDEPLQLWPLDKLRLELDEAWPYGAGLAREVGGERRPFGGGLPRVIMGPTRWRRGFVHVDELGVLNEKCGLFSANIYLQLPQRNAHSSTPQDKSQKGGDLEIWPLSIRSRWDWYRNALLLSGLTMQDPEMQVRLRKCLGPPCIINVDPGDLVLLCVQRPHAAVGFQEGCRVSLQCFIQHNSPDQRLVIDS 334
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWH0_ECTSI9.590e-12696.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMD3_9STRA1.830e-7457.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TSJ1_9STRA4.940e-6952.47Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2F4Q8_9STRA1.770e-6150.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2ENC7_TRICV3.180e-5851.60Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A2R5GMH1_9STRA1.570e-5547.30Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
K8Z8S2_NANGC3.600e-5550.98Asp_Arg_Hydrox domain-containing protein n=2 Tax=N... [more]
A0A7S2UCX0_9STRA8.880e-5551.13Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2WJU7_9STRA4.090e-5446.67Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0BX36_9STRA6.780e-5447.83Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:520972..526325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size567
Model size1710
Exons2
Ec32 orthologEc-26_006650.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs29QIV@1,2S32Z@2759
Seed eggNOG ortholog2880.D7FWH0
Seed ortholog evalue3.7e-102
Seed ortholog score377.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16427.1prot_E-siliculosus-1a_M_contig82.16427.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 524698..525264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936258.863153-UTR-E-siliculosus-1a_M_contig82:520971..5210271622936258.863153-UTR-E-siliculosus-1a_M_contig82:520971..521027Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 520972..521027 +
1696250995.7947392-UTR-E-siliculosus-1a_M_contig82:520971..5210271696250995.7947392-UTR-E-siliculosus-1a_M_contig82:520971..521027Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 520972..521027 +
1622936258.877169-UTR-E-siliculosus-1a_M_contig82:524671..5246971622936258.877169-UTR-E-siliculosus-1a_M_contig82:524671..524697Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 524672..524697 +
1696250995.8053975-UTR-E-siliculosus-1a_M_contig82:524671..5246971696250995.8053975-UTR-E-siliculosus-1a_M_contig82:524671..524697Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 524672..524697 +
1622936258.9114058-UTR-E-siliculosus-1a_M_contig82:525264..5263251622936258.9114058-UTR-E-siliculosus-1a_M_contig82:525264..526325Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 525265..526325 +
1696250995.8273547-UTR-E-siliculosus-1a_M_contig82:525264..5263251696250995.8273547-UTR-E-siliculosus-1a_M_contig82:525264..526325Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 525265..526325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936258.8950658-CDS-E-siliculosus-1a_M_contig82:524697..5252641622936258.8950658-CDS-E-siliculosus-1a_M_contig82:524697..525264Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 524698..525264 +
1696250995.815933-CDS-E-siliculosus-1a_M_contig82:524697..5252641696250995.815933-CDS-E-siliculosus-1a_M_contig82:524697..525264Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 524698..525264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16427.1

>prot_E-siliculosus-1a_M_contig82.16427.1 ID=prot_E-siliculosus-1a_M_contig82.16427.1|Name=mRNA_E-siliculosus-1a_M_contig82.16427.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=189bp
MRWWRDNGGEAGQQQHQSPLLGPLDKLRLELDEVWPEGASVRKNEEGKPF
LAGVARVMRGPTRYVEGFMHVDELAPMVESRGTFSANVYLKIPPTGGELA
VWPLAVRSRWDFYRHAETLSHLTVQREEGQALLRRKLPPPRVIKVAPGDL
VVLCVQRPHAAQGFPMGTRVSVQSFLTFEKGKPLLLDN*
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mRNA from alignment at E-siliculosus-1a_M_contig82:520972..526325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16427.1 ID=mRNA_E-siliculosus-1a_M_contig82.16427.1|Name=mRNA_E-siliculosus-1a_M_contig82.16427.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5354bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:520972..526325+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAGCGTCGGCAAGCCCTTCAACGTGGCTGCCAGCGAGGGGCCCGAATCTG
TCGCAGGTGAGACAGGGGGGGGGTGGGGGGTGTTATTCAGAGTTACCGTT
GGTCAGTTTTCCGTACATGATGAGTATGGTCTGTGGTCTGTGGTACTACA
GCGTGTGTGTTTCTCGTGCGTGGAAGCAACGGTGACGACGGGTTAAGGAG
GTGTTATGTAGGTTGTGACATCTAGCGGTGATTCAGATACGGTTTGCCTT
TTTCTATTACCCGCTGAGTGAGCCAAATGCAATATGATCAGTCTCCTCAA
CTGCGGAGCCCCCAGCAGCAGTCAACTCTCTTCAATGCATTAATCATCAA
TGATCAGCACTATTGTAGATATACCAACTCCCTATTCTGTATCCTACGGC
AGTATTCGCAGGGTAAAGGTTAATCTTGCATGTCGTTGGTTTACATTGCC
GGCCCGCTCGTAAGAAACACCTACAATAGTCCAGCTGAGGCTTTAAATCT
TACCGCTGTGACGAGATGTGACCATCTCTGACGCGGGTTCAGTGTGGAGC
TAAATTGTAGTCCGACCTGTGTGCAGGTTGGAGTCGCTTCGCTTCTTCAG
TCTGTTTCCTTCCTTGCCCTTCCTTTCTCTCTCAGTCGCTCGCTATCGCT
CACTCCCAGGCAGCACTGAGCAAGAGGGAACGCTTGCACATCGCTTGCAC
ACCGCAGCTATAGTGAGCTGAATATCTTATGTAATCATTTCTTAGTTTTT
CCCGATGAGAATTATTGCACAATTTTCTTATTGTCGCCATCGTTGTTTTT
TCACCGTGTAAATTGCACAATTTGTTATCAACGCCATTTCCTTTTCCACA
GTCTCGAAGCTTTGCACTCCACGTGCGACCAGAACGCGTCGTCGATGGGC
TTGTTAGCCCTCACGTGCTTCTTGATGCAATCTTCGTGGCTGCCCTCTCT
TCTGTAGCCGGCATCAACAAAGATAGCTCGACAACCTCTCGAGGTTGCCG
ATGGATGCGTCTTAAAGCGGCATTACCTTCCTTGTGCATGAAGGAAGAAC
ACAAGTTTTGGTGAAGCGGCGGCGCATCCAGGGGGGTCCGTCGACGCAAT
CTCAAGGAGACCCACTCTACTTGCGGCGATATAATAGCCCCCCCGCCCGT
TGTATGCGCGCGGAGGCCGTTCTTATTTTCCCGCGGCCAGTCATGAGTCC
TCTGTTTCTTGTGTCTAGGAAGTCGAAGTTGTGCTATTTCTTATGAGTCC
ATTTCTTATCACTCTCCGTCAAAACGAGCTCAGTTCCTCTGCGCTTTTAG
TGTATAACATTTTCAAAATTTTGAGCCTCGGTTTCTTACGATGTTTCTTA
CGAGCGGGCCGGCACTGTACTCTTCCCGTCATCTAGAGATATACATACGT
AGGAATATACCGGTGGCTCGACTGTTATTGTTCGATGCCGGCTGCTGCTG
CGGCTTGCATCTATCTGTGGTTTAGGTAAATCGCTAGCTACTCTGCAGAT
ATCATCTCTCTTACACAGTGCTGGAGCGCATGCCATCTTGTTCTCGGCAG
ATGCGCTCGTGTAGCTGATGAATCTGCCACAAAGACACAATACTTCGTAC
ATTCTCCAAAGCGTGATACCTTCATGATACAACTTTGATGCGCAAAATGA
TGCGTGATTCAATACTACTGCGAGGCCGAGTCTTACGTCGTGATTATTTC
GGGATTTTTTTTAGGGGGGGGTCCTTTTCTCAGCCCATACGATTATTTGA
GCGTCTTACGCGGAGGAATTTGGCCAATTCCAAACGCCGAGTATTTCCTA
GGATCCCAGCTGCCGCGTTGGAGAATAGGCCCATTTTCCAAACTGGATCG
GCTGATAATTTTCAGTTTGGAATTGGGGGGGGGTCACCCCCTGGTCACAC
CCGGATCGTCCCAGAACGAGGAACTACACCGTCTGCTGGCCAAACAGAGG
CCAGTATCATGAGGTCATGCTCAAACCCTCTGCAGGTATCTAAAATTCAG
GGCGTTCTGAGTCGTGTTGGCCGCACACGAGCCGATAACGTCAACCCTGC
CACATTGCTCTGCTGACGTTCTTGCCTTTGGGCCGAAAAGAGCCATTTTT
GGGTCTGCTGCATGTATGTGTGACCAGTCAAAACGCACGCCAGAGAGAGG
CTTTACGCCGTCGACATCCACAAACTGCAGCCAGTGGCGTGTGATCATAT
ACATACCCTCTGCTCGCGTCCCAGAAACAGATCGTATTATCCAGTGTTGA
TTGCACACGGCCTGTAAACGTGAACCGAAGTGTGTTGCGATGTTGACTTT
TTTGGACGTTGCCTTTTTTTTTCTGGTTGCTCCGAGTGTGATCAGTCCAC
AACGCATGCCAGAGAGAGGCCATTGGCCGACGACATCCACAAACTGCAGA
CACTGGCGTGCGACTATACACACGCCTCTTGGAGGCGACCCAATAACAGG
GCACTCGGTGTCTTCCTGGGCGCACACGAGCCAAAACCGTGAACTGAAGC
ATGTTGTGGCCCACAAAGGCTTGAATCGGCCCTTTATTGCCCCTGACACA
AAAAAACTGTCTTGAGGAACCGTAAGAAGGTCGTCTGGATCCAGATAATT
TTTCCCTTGAAGACAACCCCCCTCGACCGAGAGCAAAAAAAAATATCCGA
CATAATCACGACGTAAGACTCGGCCTTAGCGCCCGCACTTGAGAACTTGG
CAGCCAGTTAAGAAATTTACGTTACCTCGAAAAACTCAAAATCTAACTTG
AGCCGTTTGTGAGTTCGGTTGAAAAACCCAACACTGTAAAACCTTTTGAG
TGGCCATGTGTAGCATACAGTAGCACTACTGTAGGCACTGTAAGTGTAAG
AAACTCAGCCTCGGCGAGAGCTACAGTAGAGGTTCTGAAATAGGTGCGGG
CGCTGACTGTGCTGCTGTAGTCCTCGGCAGAAGACGAGAGATGTTGCACA
GTAGTAGATGTGACCCTTTTTGAAGTTAATCTACTATGCTATGCATATAT
CTCCACGTTACCCGCTCGTTCTTGTGTGCAAGAAGGCCGAAAAGAAGGCG
GAAAGAAGGCTTCTATTAGGGGCGGGTACAAGTAGCCGGATATAATCAGT
TCTAATTCTTCGCGATCTTTTTTAATCTTTTGGGAGGTTTCGACGGGTGC
ACGACGTCCGCCGCGTCACGAGAAATTCCATATTTTCGAGAAGGAAGGTA
TCATGTTTTTTATTGTCCCTCCCCAACCATTTGTGGGCAGGAGGCAGAAT
CGAACCTGGGAAATTCGCCACCAAAATCAGACAACATGAGAGAAAGGAAC
CTAAACTTCTTCGAGAGACGCTAGGGAGATGCGACCCTGAGTCGTCAGCG
TATGAATGCACATTGACCAAATTGAATATGGATCATGAGTTTTTGTAGCC
CCTCTCTATTATGCTTGTCTGTTTCAAAGGCCGGGAATCCGTTCAGCGTG
TACTGCTGTACTGTACTAGTAGCAACCAAGACCGCAGGACAGACGAGAGC
TGCCGGTCGCCGTGGCAGCTATGTAGCTTGTAGAGAGAACCGAAATCGAG
GCTAAAACAAAATACGCCGGTGGAACTTCAAAGAACTTGGATGAACCACA
GGCATGGGAGAGCGTGAATCGTTGGCCCCGCTCACCCGCCCCTTCCCCCA
TTTTTTTTCCATGCGCCCACCAATCAACGCAATAATACCACAAATACCAG
CCTACTTCGACGGGGCTCTGTCCAACATGCGATGGTGGCGAGATAACGGA
GGTGAGGCCGGACAACAGCAGCACCAGTCACCCCTGCTAGGGCCGTTAGA
CAAGCTCCGGCTTGAGCTGGACGAGGTGTGGCCGGAGGGGGCCAGCGTGC
GGAAAAACGAGGAGGGGAAGCCTTTCCTGGCCGGGGTGGCGAGGGTCATG
CGGGGCCCCACCAGGTACGTCGAAGGCTTCATGCACGTCGACGAGCTCGC
GCCCATGGTCGAGAGCAGGGGCACCTTCAGCGCCAACGTTTACTTGAAGA
TCCCGCCCACGGGTGGCGAGCTCGCGGTGTGGCCTTTGGCGGTGCGGTCT
CGCTGGGACTTCTACCGCCACGCGGAGACGCTGTCGCATCTGACCGTGCA
GCGAGAGGAGGGGCAGGCGTTGCTGCGGAGAAAGCTGCCCCCCCCGCGGG
TGATCAAGGTGGCGCCGGGGGACCTGGTTGTTCTGTGCGTCCAGAGGCCG
CACGCTGCCCAAGGGTTCCCCATGGGGACGCGGGTTAGCGTGCAGTCCTT
CTTGACGTTCGAGAAGGGCAAGCCGTTGTTGTTGGATAACTAGTAACTGC
TGTCTAGGGTGGCGTGCGTGGGTACCTACCGTAGTAGATTGACTTGATTA
ACTCGAGAGAAGGGTCCTACAACAAAAAAAAAAAACGCATTACCGTCGTC
GTGTCTGGTACAACAGCTGCTTTCTTGGCGCTCTCGTGGCCCTTCCAAGC
TTCGAAGTTGGTTCTTGTGGTGGAACACGTTTTTCTTTCTATTTTTGCTC
TGCTCGTGTGGAGGGGATGGATGCTGACGATCTCTGTCGCGTTTCGGGGA
ACATTAGTAGGTATGCATACCTGTTTCTATTTTGGTTGTGTTTTCGTCCG
TCATGAGTTGGAATCGAGCAGAAACAATCGCCCGATGTGGTAGTTAATTG
GTACAGCAGTACCCTCCAACCGTTACGAGGTATTGCCGTCAATACTCTCT
CGTTTCCCTTTAGAAATGCAACAGTTTACATCAACATCATACATTTTCGT
CACGCGTGTGCATATTCAAGACGCATGACACGCCATCTCCGTATGCATGC
AGCATGCACTAATTGCCTTAGTTTGGTTGGATTTTCCGACGGCTACAACT
CGTGTGAGTCGATGGTTGACGAGCTTCTTGGCTCCACTTGAAGTCCAATC
GTGTGTGGCAGTACGAAGGCTTGTAGACAATATTATTCTACCATTTCGGG
GGACACGCAGTGGGCGTTCTTCTGCGGACTCTCGTGGTGCCGATTGAGTA
AGATTTGGTTCTGCAAAGGCACGAAAACCCGCCCATTTCGCCGAAAAGGA
CGTTTTCGCGAGAGAGAGCCTCTCGTAAAAATCGATTGTCGGTGACGTAT
GCTCGAAGGCTGGTTTCAACGTTGCAAGAACGAAGTTCACCAAAAGCCAG
GAGGGGGGGGCGTGGGATTGCATTGACCGTTGCCTGTGTTTGTTTATCAA
CGGGAGAAAGAACGATGAGGATATCGTTGCTCGAAAAAGAGGAAGAAACA
CGCAGTCAAGATAACACCGTTAGGTCTGAGGCTCGATGCGGCAAATTTAT
CCGACTTAGTCGAACTGGATCATCATCGGCATATCTATCTCCTCTCAGAG
CTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:520972..526325+

>mRNA_E-siliculosus-1a_M_contig82.16427.1 ID=mRNA_E-siliculosus-1a_M_contig82.16427.1|Name=mRNA_E-siliculosus-1a_M_contig82.16427.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1134bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:520972..526325+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGATGGTGGCGAGATAACGGAGGTGAGGCCGGACAACAGCAGCACCA
GTCACCCCTGCTAGGGCCGTTAGACAAGCTCCGGCTTGAGCTGGACGAGG
TGTGGCCGGAGGGGGCCAGCGTGCGGAAAAACGAGGAGGGGAAGCCTTTC
CTGGCCGGGGTGGCGAGGGTCATGCGGGGCCCCACCAGGTACGTCGAAGG
CTTCATGCACGTCGACGAGCTCGCGCCCATGGTCGAGAGCAGGGGCACCT
TCAGCGCCAACGTTTACTTGAAGATCCCGCCCACGGGTGGCGAGCTCGCG
GTGTGGCCTTTGGCGGTGCGGTCTCGCTGGGACTTCTACCGCCACGCGGA
GACGCTGTCGCATCTGACCGTGCAGCGAGAGGAGGGGCAGGCGTTGCTGC
GGAGAAAGCTGCCCCCCCCGCGGGTGATCAAGGTGGCGCCGGGGGACCTG
GTTGTTCTGTGCGTCCAGAGGCCGCACGCTGCCCAAGGGTTCCCCATGGG
GACGCGGGTTAGCGTGCAGTCCTTCTTGACGTTCGAGAAGGGCAAGCCGT
TGTTGTTGGATAACTAGATGCGATGGTGGCGAGATAACGGAGGTGAGGCC
GGACAACAGCAGCACCAGTCACCCCTGCTAGGGCCGTTAGACAAGCTCCG
GCTTGAGCTGGACGAGGTGTGGCCGGAGGGGGCCAGCGTGCGGAAAAACG
AGGAGGGGAAGCCTTTCCTGGCCGGGGTGGCGAGGGTCATGCGGGGCCCC
ACCAGGTACGTCGAAGGCTTCATGCACGTCGACGAGCTCGCGCCCATGGT
CGAGAGCAGGGGCACCTTCAGCGCCAACGTTTACTTGAAGATCCCGCCCA
CGGGTGGCGAGCTCGCGGTGTGGCCTTTGGCGGTGCGGTCTCGCTGGGAC
TTCTACCGCCACGCGGAGACGCTGTCGCATCTGACCGTGCAGCGAGAGGA
GGGGCAGGCGTTGCTGCGGAGAAAGCTGCCCCCCCCGCGGGTGATCAAGG
TGGCGCCGGGGGACCTGGTTGTTCTGTGCGTCCAGAGGCCGCACGCTGCC
CAAGGGTTCCCCATGGGGACGCGGGTTAGCGTGCAGTCCTTCTTGACGTT
CGAGAAGGGCAAGCCGTTGTTGTTGGATAACTAG
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