mRNA_E-siliculosus-1a_M_contig82.16383.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16383.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16383.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:225762..226287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size372
Model size526
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16383.1prot_E-siliculosus-1a_M_contig82.16383.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 225881..226252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936246.9037085-UTR-E-siliculosus-1a_M_contig82:225761..2258801622936246.9037085-UTR-E-siliculosus-1a_M_contig82:225761..225880Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 225762..225880 +
1696250989.786218-UTR-E-siliculosus-1a_M_contig82:225761..2258801696250989.786218-UTR-E-siliculosus-1a_M_contig82:225761..225880Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 225762..225880 +
1622936246.9404066-UTR-E-siliculosus-1a_M_contig82:226252..2262871622936246.9404066-UTR-E-siliculosus-1a_M_contig82:226252..226287Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 226253..226287 +
1696250989.8056653-UTR-E-siliculosus-1a_M_contig82:226252..2262871696250989.8056653-UTR-E-siliculosus-1a_M_contig82:226252..226287Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 226253..226287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936246.9197965-CDS-E-siliculosus-1a_M_contig82:225880..2262521622936246.9197965-CDS-E-siliculosus-1a_M_contig82:225880..226252Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 225881..226252 +
1696250989.79622-CDS-E-siliculosus-1a_M_contig82:225880..2262521696250989.79622-CDS-E-siliculosus-1a_M_contig82:225880..226252Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 225881..226252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16383.1

>prot_E-siliculosus-1a_M_contig82.16383.1 ID=prot_E-siliculosus-1a_M_contig82.16383.1|Name=mRNA_E-siliculosus-1a_M_contig82.16383.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=124bp
MFVIRPCGVVTMLQTYNGHHRSRTLYMITCRTPSPKPPPVLQHQLEVCDI
FGPAWPLNTLQYIHQVSTAHLQRDEFSYTRNMSYSHSPQVPGLSPAAPHT
YFLANLQASIVGLTRQRRPCSPV*
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mRNA from alignment at E-siliculosus-1a_M_contig82:225762..226287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16383.1 ID=mRNA_E-siliculosus-1a_M_contig82.16383.1|Name=mRNA_E-siliculosus-1a_M_contig82.16383.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=526bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:225762..226287+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCCGAACCATGTGGCCAGCTTAATAAGGTCATCGCAGTCGTACCCTGTA
CATGATCATGGGTACAACCTTGGCCAGGGGTCCACCTTAATATGGATGTG
ATTACTTCACCCGCACTACATGTTCGTGATTCGACCCTGTGGTGTCGTAA
CCATGTTGCAAACATACAATGGTCATCATCGCAGTCGTACCCTGTACATG
ATCACGTGTAGGACCCCTTCGCCCAAACCTCCACCTGTCCTACAGCACCA
GCTAGAGGTGTGTGACATCTTCGGTCCAGCCTGGCCCTTGAATACACTTC
AATACATACATCAAGTGTCTACCGCACACCTTCAGAGAGACGAATTCTCG
TATACGAGGAACATGTCTTATTCCCACTCTCCGCAAGTCCCGGGGCTCTC
TCCCGCAGCTCCACACACGTACTTCTTGGCAAACCTTCAAGCAAGCATAG
TAGGACTAACACGGCAGCGTCGTCCATGTTCTCCAGTATAGGATAAACCA
AGACAGAGAGCCCCCGTTCCGTCCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:225762..226287+

>mRNA_E-siliculosus-1a_M_contig82.16383.1 ID=mRNA_E-siliculosus-1a_M_contig82.16383.1|Name=mRNA_E-siliculosus-1a_M_contig82.16383.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=744bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:225762..226287+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTCGTGATTCGACCCTGTGGTGTCGTAACCATGTTGCAAACATACAA
TGGTCATCATCGCAGTCGTACCCTGTACATGATCACGTGTAGGACCCCTT
CGCCCAAACCTCCACCTGTCCTACAGCACCAGCTAGAGGTGTGTGACATC
TTCGGTCCAGCCTGGCCCTTGAATACACTTCAATACATACATCAAGTGTC
TACCGCACACCTTCAGAGAGACGAATTCTCGTATACGAGGAACATGTCTT
ATTCCCACTCTCCGCAAGTCCCGGGGCTCTCTCCCGCAGCTCCACACACG
TACTTCTTGGCAAACCTTCAAGCAAGCATAGTAGGACTAACACGGCAGCG
TCGTCCATGTTCTCCAGTATAGATGTTCGTGATTCGACCCTGTGGTGTCG
TAACCATGTTGCAAACATACAATGGTCATCATCGCAGTCGTACCCTGTAC
ATGATCACGTGTAGGACCCCTTCGCCCAAACCTCCACCTGTCCTACAGCA
CCAGCTAGAGGTGTGTGACATCTTCGGTCCAGCCTGGCCCTTGAATACAC
TTCAATACATACATCAAGTGTCTACCGCACACCTTCAGAGAGACGAATTC
TCGTATACGAGGAACATGTCTTATTCCCACTCTCCGCAAGTCCCGGGGCT
CTCTCCCGCAGCTCCACACACGTACTTCTTGGCAAACCTTCAAGCAAGCA
TAGTAGGACTAACACGGCAGCGTCGTCCATGTTCTCCAGTATAG
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