mRNA_E-siliculosus-1a_M_contig82.16361.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16361.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16361.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A6C0KUV3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KUV3_9ZZZZ)

HSP 1 Score: 65.1 bits (157), Expect = 6.500e-10
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLEKT-KDIVDPRWGMTPRDMMKSLGGKNTFATK 246
            +IG +GR R GKDT+A ++   +P    +  + P+K A K  Y    EQLE + K+I+DPRW ++PRD M  +   +TF  K
Sbjct:    8 IIGLLGRARRGKDTVANYIIKKYPCYTNIKLSKPIKDAAKSLYDFTYEQLEGSQKEIIDPRWNISPRDAMVFI--TSTFMNK 87          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A6G6XPL3_9VIRU (Deoxynucleoside monophosphate kinase n=1 Tax=Dishui Lake large algae virus 1 TaxID=2704073 RepID=A0A6G6XPL3_9VIRU)

HSP 1 Score: 65.1 bits (157), Expect = 6.500e-10
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLEKT-KDIVDPRWGMTPRDMMKSLG 222
            ++   G++RSGKDT+A ++   +   +I   A PLK  CK  +H  D+QLE   K++VDPRWG++PR +M+ +G
Sbjct:   11 VVALCGQRRSGKDTIANYLVTGYGYEHIKITA-PLKTVCKTLFHFTDDQLETDIKEVVDPRWGVSPRQVMQFVG 83          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A1V0SJ10_9VIRU (Deoxynucleoside monophosphate kinase n=1 Tax=Klosneuvirus KNV1 TaxID=1977640 RepID=A0A1V0SJ10_9VIRU)

HSP 1 Score: 63.9 bits (154), Expect = 1.420e-9
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLE-KTKDIVDPRWGMTPRDMMKSLG 222
            M+IG +GRK SGKDT++ ++   F +   M  A+PLK AC+  ++  +EQL    K+  DP+WG++PR +++ LG
Sbjct:    1 MLIGVLGRKGSGKDTVSDYIVHKF-NFEKMILAEPLKNACRELFNFSEEQLYGNLKETDDPQWGISPRKVLQWLG 74          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A836CMM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMM7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLEKT--KDIVDPRWGMTPRDMMKSLG 222
            +++G V  K +GKDT A  V D   D   +SFADP+K AC+  + L  + LE    K+ VD RWG++ R MM+ LG
Sbjct:    5 LIVGLVAPKAAGKDTFANAVGDDAKDFAKLSFADPIKAACRSIFSLDVDDLEDRVKKESVDDRWGVSRRKMMQVLG 80          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A7D3QU00_9VIRU (Deoxynucleoside monophosphate kinase n=1 Tax=Fadolivirus 1 TaxID=2740746 RepID=A0A7D3QU00_9VIRU)

HSP 1 Score: 62.8 bits (151), Expect = 4.950e-9
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLE-KTKDIVDPRWGMTPRDMMKSLGGKNTFATKTLTIGPRTCPSESRAWAAL*SRMY 318
            M+IG +GRK +GKDT+A  +   +    ++  A PLK ACK  ++  DEQL    K+ +DP WG++PR +++ +G  + F      I P      S  W  L S  Y
Sbjct:   10 MIIGILGRKGAGKDTIADHMIKNYKFQKLV-LAQPLKDACKVLFNFNDEQLYGNLKETIDPNWGVSPRQVLQYVG-TDIFRKDITRIIPDI---NSNFWVNLMSTKY 111          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A836CHH3_9STRA (Deoxynucleotide monophosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.270e-9
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLE--KTKDIVDPRWGMTPRDMMKSLG 222
            +IG VG K +GKDT A  +          SFA P+K+AC   + L DE  E  + K+ VDPRWG++PR M+++LG
Sbjct:    3 IIGLVGTKGAGKDTFADAL-----GLPKYSFAAPIKEACCAIFMLDDEAFEDRRLKETVDPRWGISPRSMLQTLG 72          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A836CE54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE54_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.090e-8
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  255 HWTKNMSFRIQGLGS--VVISDVRFQNEAAFVKENGGVLIHVWRDMESNSDNDVTEQTTDEISCDHYIRNDGSLEDLRVK 488
            HW ++M  ++Q   S  VVI+DVRF +EAAFV+  GG L+ + R      D  V+E     I CD  I NDGS++D+R K
Sbjct:   84 HWIRHMEMQLQRCESESVVITDVRFPDEAAFVRRLGGRLVRIVRPTLRTDDAHVSETGIGGIECDEIIVNDGSIQDIREK 163          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A836CF82_9STRA (Deoxynucleotide monophosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF82_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.800e-8
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLEKT--KDIVDPRWGMTPRDMMKSLG 222
            +IG VG K +GKDT A  +          SFA P+K+AC   + L DE  E    K+ VDPRWG++PR M+++LG
Sbjct:    3 IIGLVGTKGAGKDTFADAL-----GLPKFSFAAPIKEACCAIFMLDDEAFEDRHLKETVDPRWGISPRSMLQTLG 72          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A835YKK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKK8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.010e-8
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQLEKT--KDIVDPRWGMTPRDMMKSLG 222
            +++G V  K +GKDT A  V D   D   +SFADP+K AC+  + L  + LE    K+ VD RWG++ R MM+ LG
Sbjct:  138 LIVGLVAPKAAGKDTFANAVGDDAKDFAKLSFADPIKAACRSIFLLDVDDLEDRVKKESVDDRWGVSRRKMMQVLG 213          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Match: A0A6C0LBN9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LBN9_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-7
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQL-------EKTKDIVDPRWGMTPRDMMKSLG 222
            M+I   G KRSGKD LA  + D +    + +FA PLK A K  ++  D+Q+        + KDIVD RWG+TPR  ++  G
Sbjct:    8 MIIAICGAKRSGKDVLAQHLVDKYNYERV-AFAQPLKLAIKSLFNFDDDQVGIGEDKGTERKDIVDERWGITPRTALQFFG 87          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C0KUV3_9ZZZZ6.500e-1040.24Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6G6XPL3_9VIRU6.500e-1041.89Deoxynucleoside monophosphate kinase n=1 Tax=Dishu... [more]
A0A1V0SJ10_9VIRU1.420e-941.33Deoxynucleoside monophosphate kinase n=1 Tax=Klosn... [more]
A0A836CMM7_9STRA3.000e-943.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7D3QU00_9VIRU4.950e-935.51Deoxynucleoside monophosphate kinase n=1 Tax=Fadol... [more]
A0A836CHH3_9STRA9.270e-944.00Deoxynucleotide monophosphate kinase n=1 Tax=Tribo... [more]
A0A836CE54_9STRA1.090e-843.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF82_9STRA1.800e-844.00Deoxynucleotide monophosphate kinase n=1 Tax=Tribo... [more]
A0A835YKK8_9STRA2.010e-843.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0LBN9_9ZZZZ1.040e-740.74Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:41784..42286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size306
Model size503
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936247.384032-CDS-E-siliculosus-1a_M_contig82:41783..420891622936247.384032-CDS-E-siliculosus-1a_M_contig82:41783..42089Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 41784..42089 +
1696250989.9526021-CDS-E-siliculosus-1a_M_contig82:41783..420891696250989.9526021-CDS-E-siliculosus-1a_M_contig82:41783..42089Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 41784..42089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936247.399437-UTR-E-siliculosus-1a_M_contig82:42089..422861622936247.399437-UTR-E-siliculosus-1a_M_contig82:42089..42286Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 42090..42286 +
1696250989.9664443-UTR-E-siliculosus-1a_M_contig82:42089..422861696250989.9664443-UTR-E-siliculosus-1a_M_contig82:42089..42286Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 42090..42286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16361.1prot_E-siliculosus-1a_M_contig82.16361.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 41784..42089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16361.1

>prot_E-siliculosus-1a_M_contig82.16361.1 ID=prot_E-siliculosus-1a_M_contig82.16361.1|Name=mRNA_E-siliculosus-1a_M_contig82.16361.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=102bp
MMIGFVGRKRSGKDTLATFVRDLFPDTNIMSFADPLKQACKHAYHLKDEQ
LEKTKDIVDPRWGMTPRDMMKSLGGKNTFATKTLTIGPRTCPSESRAWAA
L*
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mRNA from alignment at E-siliculosus-1a_M_contig82:41784..42286+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16361.1 ID=mRNA_E-siliculosus-1a_M_contig82.16361.1|Name=mRNA_E-siliculosus-1a_M_contig82.16361.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=503bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:41784..42286+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGATAGGGTTCGTTGGCAGAAAGCGTTCCGGAAAAGACACCCTTGC CACATTCGTGCGCGATTTATTCCCAGACACTAACATCATGTCATTTGCGG ACCCCCTCAAGCAGGCATGCAAGCACGCCTACCATCTCAAGGATGAGCAG CTAGAGAAGACCAAGGATATAGTCGACCCTCGTTGGGGGATGACTCCCCG GGACATGATGAAATCCCTCGGCGGGAAAAATACTTTCGCTACGAAGACCC TCACCATTGGACCAAGAACATGTCCTTCCGAATCCAGGGCTTGGGCAGCG TTGTAATCTCGGATGTACGGTTTCAGAACGAGGCCGCCTTCGTCAAAGAG AACGGCGGTGTTCTGATCCACGTGTGGAGGGACATGGAGAGTAACAGTGA CAACGATGTTACCGAGCAAACAACGGATGAGATATCATGCGACCACTACA TTCGCAACGACGGTTCTCTGGAGGACCTTAGGGTCAAACTAGTGGCCGTG CTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:41784..42286+

>mRNA_E-siliculosus-1a_M_contig82.16361.1 ID=mRNA_E-siliculosus-1a_M_contig82.16361.1|Name=mRNA_E-siliculosus-1a_M_contig82.16361.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:41784..42286+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGATAGGGTTCGTTGGCAGAAAGCGTTCCGGAAAAGACACCCTTGC
CACATTCGTGCGCGATTTATTCCCAGACACTAACATCATGTCATTTGCGG
ACCCCCTCAAGCAGGCATGCAAGCACGCCTACCATCTCAAGGATGAGCAG
CTAGAGAAGACCAAGGATATAGTCGACCCTCGTTGGGGGATGACTCCCCG
GGACATGATGAAATCCCTCGGCGGGAAAAATACTTTCGCTACGAAGACCC
TCACCATTGGACCAAGAACATGTCCTTCCGAATCCAGGGCTTGGGCAGCG
TTGTAAATGATGATAGGGTTCGTTGGCAGAAAGCGTTCCGGAAAAGACAC
CCTTGCCACATTCGTGCGCGATTTATTCCCAGACACTAACATCATGTCAT
TTGCGGACCCCCTCAAGCAGGCATGCAAGCACGCCTACCATCTCAAGGAT
GAGCAGCTAGAGAAGACCAAGGATATAGTCGACCCTCGTTGGGGGATGAC
TCCCCGGGACATGATGAAATCCCTCGGCGGGAAAAATACTTTCGCTACGA
AGACCCTCACCATTGGACCAAGAACATGTCCTTCCGAATCCAGGGCTTGG
GCAGCGTTGTAA
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