mRNA_E-siliculosus-1a_M_contig81.16330.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig81.16330.1
Unique NamemRNA_E-siliculosus-1a_M_contig81.16330.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig81.16330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig81contigE-siliculosus-1a_M_contig81:329596..332761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size624
Model size1795
Exons3
Ec32 orthologEc-26_000300.3
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-26_000300.2
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig81.16330.1prot_E-siliculosus-1a_M_contig81.16330.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig81 329596..331591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936240.7881954-CDS-E-siliculosus-1a_M_contig81:329595..3296631622936240.7881954-CDS-E-siliculosus-1a_M_contig81:329595..329663Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 329596..329663 -
1696250986.8998883-CDS-E-siliculosus-1a_M_contig81:329595..3296631696250986.8998883-CDS-E-siliculosus-1a_M_contig81:329595..329663Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 329596..329663 -
1622936240.8084722-CDS-E-siliculosus-1a_M_contig81:330750..3310651622936240.8084722-CDS-E-siliculosus-1a_M_contig81:330750..331065Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 330751..331065 -
1696250986.9117365-CDS-E-siliculosus-1a_M_contig81:330750..3310651696250986.9117365-CDS-E-siliculosus-1a_M_contig81:330750..331065Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 330751..331065 -
1622936240.8427572-CDS-E-siliculosus-1a_M_contig81:331350..3315911622936240.8427572-CDS-E-siliculosus-1a_M_contig81:331350..331591Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 331351..331591 -
1696250986.9289122-CDS-E-siliculosus-1a_M_contig81:331350..3315911696250986.9289122-CDS-E-siliculosus-1a_M_contig81:331350..331591Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 331351..331591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936240.865375-UTR-E-siliculosus-1a_M_contig81:331591..3327611622936240.865375-UTR-E-siliculosus-1a_M_contig81:331591..332761Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 331592..332761 -
1696250986.9417362-UTR-E-siliculosus-1a_M_contig81:331591..3327611696250986.9417362-UTR-E-siliculosus-1a_M_contig81:331591..332761Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 331592..332761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig81.16330.1

>prot_E-siliculosus-1a_M_contig81.16330.1 ID=prot_E-siliculosus-1a_M_contig81.16330.1|Name=mRNA_E-siliculosus-1a_M_contig81.16330.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=208bp
MAERSQDLQQMLQDATQNGLVSTEHPSMQHFIDAVEHLNAAQHMATSLAT
PLAMAEQHVQTFEAALQIAQQNAMDGAAQPSINRSQDPPAQQLTALLQKN
KNDALQAEAEIILARFWNQGIAHHYRKRAELLESTYFGNGDERAVVVLLR
HDKEIAESAFADASTVDSSTQLSGAAYVHRDAMIRCGGISIWYGKPYREP
VQSGWNTR
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mRNA from alignment at E-siliculosus-1a_M_contig81:329596..332761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig81.16330.1 ID=mRNA_E-siliculosus-1a_M_contig81.16330.1|Name=mRNA_E-siliculosus-1a_M_contig81.16330.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3166bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig81:329596..332761- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTTCCCCCAGCATAGAGGACAACCTGCAGACGGTATCCCACTCGGTACAT
ATATATTACATCCCGACGCAATTTGCCAAAATGCCTGTCTCTAGTTGTTC
GGGCACGAACGTCCCTTTGGCACTTTGGTTTGAAGTTTGGAGCAGGTTGC
TTCAACATGCCCATAAAGCAACCGCGCACGAAGCAGACACAACATGTTAT
CCTCCACAGGTCTTCAACCCCTAGACCGACACCGACTTACTGCGTGAGCA
GCAAGAGTGGTGGAGGGCGGTGCGCATGTACCAGATATCAACAGATTTCC
CGTCCCTCCCTCAGGGTATAATGTTCCGCCGTTCCGCTGTAGGCGACACC
GAACAGCAGTAGTAGGTGGAGTTGTTTCGATGGCGACGACCCTGTTGCAC
CCACGGGGGAGACATCGCTGTGTGCTACTCGGGGAACCATAGGAATATGG
GTTGGCCGTCATGCAACACTAGGAATTTCATTTCTAATCTTGACGGACCT
TTTTTGCTTTTTTGTCTGCTGTGGAGGAGATGTAAGTGTTTGAAAAAAAC
AAAAAGCTTCTACTAACGAACAGGTCGAGAATCCAGCAGGACTTGCGACG
AAAGTCCTGCTGTAAAGTTCAGGCGTCAAAGGGAATCCAGAGCAGCCCGT
CCCTTGTACGCACAGCAAGCGCGGCTTACCAGAACTCTCTATGTTCATCG
GATCGTTGTTCGTTGTCATCAAAAGTGGCTCCGTATTGGCTTGACAGCGG
TAAGGCGCCAATACTTTGCTTCGAGTCTCGCTATTATATGCCTCAGAATA
ATCTCGTGCAGGTCACTACCAAGTGACAAAATAGCCCTTGTTTTTGCCGC
TACATAGCAACCAAGTGTACATCCGACAACCCCCCCTAAATGTCGATTAT
CTTACTTGCTTGCCCACCCCATTAGCCACCCTGCTTGCCCAATAGTTTTG
ACTAGATTGTATTTTCTCTGCTCCCGTGCCACCTAAACCGTACAGAGCAC
CCGAAACCCTTACGAGGCGCGAGGGGGTAAACTTTAACTTTCCTTTCCCT
TCACCCGGTGCGTAATTGTGAAACACAGGAGCCCATGCCTCTCCGAATGG
CGTCAGCGGGGGTGGACCGACACCCCCACCATCCATTGCGCAAGCCTTTT
TGACGGGGCTACGCAGCCGTATGGCGGAGCGCAGCCAAGATTTGCAGCAG
ATGCTGCAGGACGCCACTCAGAATGGACTGGTCTCAACAGAGCATCCATC
CATGCAGCACTTCATTGACGCTGTGGAACACCTGAACGCGGCGCAGCACA
TGGCCACGAGCTTAGCCACGCCTTTGGCTATGGCCGAACAACACGTCCAG
ACGTTCGAGGCAGCGCTGCAGATTGCCCAACAGAACGCCATGGACGGCGC
GGCTCAGCCCTGTAAGTAAGCGTGTGTTTTGAAGAAAAGTCATGGAAGAG
AAAATGCCCAACATGCGCTACACTTTAGTCGCGAACCAGAGAATGGCTCA
CGCTGTATGCATGTGTATGAGAAGGTTGCTTGTTGCGGTAGCAGTAGGGT
GTGTTTGGCGATCTCGATCGACCTGTTGCCTCTGGTAACATGATGGGTTT
GCATGCTCTGTAAAAACAGCAAGGAAACTCAAGCATTTTACTTCTACTCA
GAACCAAGTTTGGTGCTTTGTCATGCATACGTGCATGCGCGACCAGCGAT
CAACCGCTCACAGGACCCTCCGGCCCAGCAGCTGACTGCTCTCCTCCAAA
AAAACAAGAACGACGCCCTGCAGGCCGAAGCGGAAATTATCCTCGCCCGC
TTCTGGAACCAAGGTATCGCACACCACTACCGCAAGAGGGCCGAGCTGTT
GGAGAGCACCTACTTTGGAAACGGCGACGAACGCGCTGTTGTCGTCCTGC
TGCGGCACGACAAGGAGATAGCGGAAAGCGCGTTCGCCGATGCGAGCACC
GTGGACTCTTCAACCCAGCTTTCCGGGGCCGCCTATGTCCACCGCGACGC
CATGATAAGGTGTGCACACACACAACCGTTTCTTCCTTTTATCCGGAGAA
TTAGTTCCGTTTTTTGTAACGCCAGACCGTTGACTCATCGTTGGACATTG
CGTTTGGTTATCTAGGGATAGTCGGAACCTGTGCAGGCATGTCTACGTGC
CAACGAGCAACGTGCAAGGTCAGAGCTGCGCGGTGAGCTGTGCGCCTTGC
ACTACCGCTAATGCTCTCCGTTTGCCATTATTGGTGGCTATGTGCGTAGT
CTAGCAGTGATGCTCCTTTCGTAAAGGGCATTGACGTTCGCGTACTGATG
TAGTTGTGGCTTTTTTTGCTTGCCTACCCACCGGGATCCGCTTGCCAGGA
TCTACAATCTCCTTACCAGCATCGAGGAAATTCCGGGCCTGAACATCTAA
AAATCACCGAGCTCATCAACCAACAAGAACAACCGGTCCATTGCGGGCTG
CTTGTTTCGACCGGATCGTCTCGCCAGAAACGAACCGATACGAGGCATTT
TGAGATGTTATGTCATAATCTTCGGTTGTAATTGCCCTTCCTGAACCGCT
ACCTAGCGTATCGCTTCATGAAGGGCACTGACACCCAGATGGTTTAGATC
ATTCTCTCTGCGTTGCCAGTATAGGTTTCGGAGCACAGATGTACGAGATC
AAGGATTGTTCTTTGGTCTCCACCTCCATTTTTGGGGGAGTGATTGTTTG
GGGGGGGGGGGATCGGTACCCACCACCGGAGGGGGACCCGGCCTGCCCGG
CTACCTTTTTTGTTAACGGAAACCGATTGGTTGTATGTCCATGCCCCCTA
CAGTATTGTGCAACAGCGCATGGGAATCCCGCCGCCTCCCCCCCGGCCGA
ACGCAAGTCAGAGGTCGTGGTTGCAGGTTTGGGGATAGGGGACACCCGCA
TGAGACACTACCGCGCTGTTTAGGGAGCCGCAACTGCTTTCGTGATGGCG
AATTTTCCCTCACCTTGCAACGGGCAGATGCCGTTTTGACTCCAGCTGTT
CAGCGGCTTCCTAAACAGCGCGGTAGTGTCTCATGCGGGTGTCCCCTATC
CCCAAACCTGCAACCACGACCTCTGACTTGCGTTCGGCCGGGGGGGAGGC
GGCGGGATTTCCATTTGGTACGGAAAACCGTACCGGGAACCAGTTCAAAG
TGGATGGAACACAAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig81:329596..332761-

>mRNA_E-siliculosus-1a_M_contig81.16330.1 ID=mRNA_E-siliculosus-1a_M_contig81.16330.1|Name=mRNA_E-siliculosus-1a_M_contig81.16330.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig81:329596..332761- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGGAGCGCAGCCAAGATTTGCAGCAGATGCTGCAGGACGCCACTCA
GAATGGACTGGTCTCAACAGAGCATCCATCCATGCAGCACTTCATTGACG
CTGTGGAACACCTGAACGCGGCGCAGCACATGGCCACGAGCTTAGCCACG
CCTTTGGCTATGGCCGAACAACACGTCCAGACGTTCGAGGCAGCGCTGCA
GATTGCCCAACAGAACGCCATGGACGGCGCGGCTCAGCCCTATGGCGGAG
CGCAGCCAAGATTTGCAGCAGATGCTGCAGGACGCCACTCAGAATGGACT
GGTCTCAACAGAGCATCCATCCATGCAGCACTTCATTGACGCTGTGGAAC
ACCTGAACGCGGCGCAGCACATGGCCACGAGCTTAGCCACGCCTTTGGCT
ATGGCCGAACAACACGTCCAGACGTTCGAGGCAGCGCTGCAGATTGCCCA
ACAGAACGCCATGGACGGCGCGGCTCAGCCCTCGATCAACCGCTCACAGG
ACCCTCCGGCCCAGCAGCTGACTGCTCTCCTCCAAAAAAACAAGAACGAC
GCCCTGCAGGCCGAAGCGGAAATTATCCTCGCCCGCTTCTGGAACCAAGG
TATCGCACACCACTACCGCAAGAGGGCCGAGCTGTTGGAGAGCACCTACT
TTGGAAACGGCGACGAACGCGCTGTTGTCGTCCTGCTGCGGCACGACAAG
GAGATAGCGGAAAGCGCGTTCGCCGATGCGAGCACCGTGGACTCTTCAAC
CCAGCTTTCCGGGGCCGCCTATGTCCACCGCGACGCCATGATAAGGTCGA
TCAACCGCTCACAGGACCCTCCGGCCCAGCAGCTGACTGCTCTCCTCCAA
AAAAACAAGAACGACGCCCTGCAGGCCGAAGCGGAAATTATCCTCGCCCG
CTTCTGGAACCAAGGTATCGCACACCACTACCGCAAGAGGGCCGAGCTGT
TGGAGAGCACCTACTTTGGAAACGGCGACGAACGCGCTGTTGTCGTCCTG
CTGCGGCACGACAAGGAGATAGCGGAAAGCGCGTTCGCCGATGCGAGCAC
CGTGGACTCTTCAACCCAGCTTTCCGGGGCCGCCTATGTCCACCGCGACG
CCATGATAAGGTGCGGCGGGATTTCCATTTGGTACGGAAAACCGTACCGG
GAACCAGTTCAAAGTGGATGGAACACAAGAGCGGCGGGATTTCCATTTGG
TACGGAAAACCGTACCGGGAACCAGTTCAAAGTGGATGGAACACAAGA
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