mRNA_E-siliculosus-1a_M_contig81.16324.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig81.16324.1
Unique NamemRNA_E-siliculosus-1a_M_contig81.16324.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig81.16324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig81contigE-siliculosus-1a_M_contig81:309689..310070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size315
Model size382
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig81.16324.1prot_E-siliculosus-1a_M_contig81.16324.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig81 309697..310011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936233.2892373-UTR-E-siliculosus-1a_M_contig81:309688..3096961622936233.2892373-UTR-E-siliculosus-1a_M_contig81:309688..309696Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 309689..309696 +
1696250984.0021489-UTR-E-siliculosus-1a_M_contig81:309688..3096961696250984.0021489-UTR-E-siliculosus-1a_M_contig81:309688..309696Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 309689..309696 +
1622936233.3198717-UTR-E-siliculosus-1a_M_contig81:310011..3100701622936233.3198717-UTR-E-siliculosus-1a_M_contig81:310011..310070Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 310012..310070 +
1696250984.0246675-UTR-E-siliculosus-1a_M_contig81:310011..3100701696250984.0246675-UTR-E-siliculosus-1a_M_contig81:310011..310070Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 310012..310070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936233.3062758-CDS-E-siliculosus-1a_M_contig81:309696..3100111622936233.3062758-CDS-E-siliculosus-1a_M_contig81:309696..310011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 309697..310011 +
1696250984.0141544-CDS-E-siliculosus-1a_M_contig81:309696..3100111696250984.0141544-CDS-E-siliculosus-1a_M_contig81:309696..310011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 309697..310011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig81.16324.1

>prot_E-siliculosus-1a_M_contig81.16324.1 ID=prot_E-siliculosus-1a_M_contig81.16324.1|Name=mRNA_E-siliculosus-1a_M_contig81.16324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=105bp
MASWRHRIGTRQGDGSLLFLQPRPTAVAGIERDTPAHHCAWYFAQVHGCS
HRVIAHRALFSCQLRQRCMMHASRAFNNPCIISRQEAAAEGAGWRPLRPR
LTYR*
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mRNA from alignment at E-siliculosus-1a_M_contig81:309689..310070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig81.16324.1 ID=mRNA_E-siliculosus-1a_M_contig81.16324.1|Name=mRNA_E-siliculosus-1a_M_contig81.16324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=382bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig81:309689..310070+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGTGTGCGATGGCGAGCTGGCGGCATCGTATTGGTACCAGACAGGGCGAT
GGATCTCTGTTGTTTCTTCAGCCCAGGCCTACCGCAGTAGCCGGCATCGA
ACGAGACACACCAGCTCACCACTGCGCTTGGTACTTTGCACAGGTTCACG
GCTGTTCCCATAGGGTCATTGCTCACCGCGCATTATTTTCCTGCCAGCTG
CGTCAGCGTTGCATGATGCATGCTTCACGGGCGTTCAATAACCCTTGCAT
CATCTCAAGGCAAGAAGCAGCGGCAGAGGGTGCCGGGTGGAGACCTTTGA
GACCAAGGCTTACATACAGATGATACGCAGCAGTCCTATCACAACTCCCC
CCCCCCACAAAACAAAGACCAGCCCATCGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig81:309689..310070+

>mRNA_E-siliculosus-1a_M_contig81.16324.1 ID=mRNA_E-siliculosus-1a_M_contig81.16324.1|Name=mRNA_E-siliculosus-1a_M_contig81.16324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig81:309689..310070+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGAGCTGGCGGCATCGTATTGGTACCAGACAGGGCGATGGATCTCT
GTTGTTTCTTCAGCCCAGGCCTACCGCAGTAGCCGGCATCGAACGAGACA
CACCAGCTCACCACTGCGCTTGGTACTTTGCACAGGTTCACGGCTGTTCC
CATAGGGTCATTGCTCACCGCGCATTATTTTCCTGCCAGCTGCGTCAGCG
TTGCATGATGCATGCTTCACGGGCGTTCAATAACCCTTGCATCATCTCAA
GGCAAGAAGCAGCGGCAGAGGGTGCCGGGTGGAGACCTTTGAGACCAAGG
CTTACATACAGATGAATGGCGAGCTGGCGGCATCGTATTGGTACCAGACA
GGGCGATGGATCTCTGTTGTTTCTTCAGCCCAGGCCTACCGCAGTAGCCG
GCATCGAACGAGACACACCAGCTCACCACTGCGCTTGGTACTTTGCACAG
GTTCACGGCTGTTCCCATAGGGTCATTGCTCACCGCGCATTATTTTCCTG
CCAGCTGCGTCAGCGTTGCATGATGCATGCTTCACGGGCGTTCAATAACC
CTTGCATCATCTCAAGGCAAGAAGCAGCGGCAGAGGGTGCCGGGTGGAGA
CCTTTGAGACCAAGGCTTACATACAGATGA
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