mRNA_E-siliculosus-1a_M_contig81.16320.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig81.16320.1
Unique NamemRNA_E-siliculosus-1a_M_contig81.16320.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: D7G6N7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6N7_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 2.470e-83
Identity = 141/145 (97.24%), Postives = 141/145 (97.24%), Query Frame = 1 
Query:    1 MRFASFPKATTLLLAATLLSAPMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEVMVGERPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            MRFASFPKAT LLLAATL SAPMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEVMVGE PRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEMIKAARPDLRKI KVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG
Sbjct:    1 MRFASFPKATALLLAATLPSAPMAEAGHAGEAGMEKAKEASSRGLAEEGVTEEVMVGELPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEMIKAARPDLRKITKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 145
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: A0A836CAH7_9STRA (Putative inhibitor of trypsin and hageman factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.170e-10
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  253 WKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            W ECVGM  E+A ++IK ARPD + ++ + + AMVTMD   +RVR++ DK+ IVTR P VG
Sbjct:   13 WPECVGMKGEDAAQLIKEARPDWQ-VSVLSQDAMVTMDFGFERVRVFVDKDGIVTRAPHVG 72
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: A0BEL5_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BEL5_PARTE)

HSP 1 Score: 60.8 bits (146), Expect = 3.350e-8
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  247 QTWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRV 432
            Q+W ECVG   EEA ++I A   +L  +  +PE +MVTMD RTDRVR+++D+  +V + P +
Sbjct:   10 QSWPECVGKTAEEAKQIILADNAELH-VQLLPENSMVTMDYRTDRVRVFHDENGVVKQAPHI 70
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: A0A817BAS0_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817BAS0_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 1.890e-7
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  250 TWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            +W   VG  V+EAVE IK   P+L  + K+ E + VT+D+R DRVR+++DK+  V++PP  G
Sbjct:   29 SWPNLVGKPVDEAVEEIKRDNPNLH-VQKLEENSPVTLDLRYDRVRVFFDKDGKVSQPPNTG 89
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: W9RI77_9ROSA (Glu S.griseus protease inhibitor n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RI77_9ROSA)

HSP 1 Score: 58.5 bits (140), Expect = 2.430e-7
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  250 TWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            +W E VGM+ + A + IK+  P +  +  VPEG+ VTM++R+DR R++ ++  IVTR P +G
Sbjct:   14 SWPELVGMNSDVAEKKIKSENPSVTSVNIVPEGSFVTMEIRSDRARVWVNENGIVTRVPIIG 75
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: UPI00142558B8 (subtilisin inhibitor CLSI-I-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142558B8)

HSP 1 Score: 58.9 bits (141), Expect = 2.940e-7
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  253 WKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            W + VG   + A   I    P L  +  VP G MVT D RTDRVRIY DK NIVT+PP++G
Sbjct:   35 WPDLVGETGDNAKGQILGDNPSL-DVTIVPYGHMVTTDYRTDRVRIYVDKNNIVTKPPKIG 94
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: A0A815WLF2_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A815WLF2_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 4.900e-7
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  235 MGVQQTWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            M   Q+W   VGM V EAV  IK+  P L  I  V E + VTMD+R DRVR+++D  N V+  P +G
Sbjct:    1 MSHNQSWPNLVGMPVNEAVAAIKSENPSLNVIP-VAEHSPVTMDLRMDRVRVFFDANNQVSSAPSIG 66
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: A0A1Z5JN97_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JN97_FISSO)

HSP 1 Score: 58.9 bits (141), Expect = 5.010e-7
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  232 TMGVQQTWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            TM  Q  W  CVGM+ E  + +I+AA PD++ +  V E A +TMD RTDRVRI  + +  V   P  G
Sbjct:   48 TMNAQGPWPACVGMEGEACLALIQAAAPDVQDLQIVSEDAFMTMDYRTDRVRIMVNAQGFVAHIPSRG 115
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: A0A2G9FYJ7_9LAMI (Uncharacterized protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9FYJ7_9LAMI)

HSP 1 Score: 57.8 bits (138), Expect = 7.300e-7
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:  250 TWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            TW + VG+  EEA   IK   PD   I  V   + +TMD RTDRVRI+ D    V++PP++G
Sbjct:   32 TWPKVVGLTTEEAERKIKEEMPDGTSIQIVSPDSFLTMDYRTDRVRIFIDSSGKVSKPPKIG 93
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Match: A0A7S2H357_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H357_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.200e-7
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  250 TWKECVGMDVEEAVEMIKAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG 435
            +WKE VG D + A  MIK   PDL  +  V + +MVTMD RTDR+RI+ D   +V R P++G
Sbjct:   42 SWKELVGEDGKIASAMIKNNNPDLT-VQVVNQKSMVTMDFRTDRIRIFVDDNGVVVRAPKLG 102
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig81.16320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6N7_ECTSI2.470e-8397.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAH7_9STRA3.170e-1052.46Putative inhibitor of trypsin and hageman factor n... [more]
A0BEL5_PARTE3.350e-845.16Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A817BAS0_9BILA1.890e-745.16Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
W9RI77_9ROSA2.430e-741.94Glu S.griseus protease inhibitor n=1 Tax=Morus not... [more]
UPI00142558B82.940e-750.82subtilisin inhibitor CLSI-I-like n=1 Tax=Anneissia... [more]
A0A815WLF2_9BILA4.900e-746.27Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
A0A1Z5JN97_FISSO5.010e-744.12Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A2G9FYJ7_9LAMI7.300e-745.16Uncharacterized protein n=1 Tax=Handroanthus impet... [more]
A0A7S2H357_9STRA9.200e-748.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig81contigE-siliculosus-1a_M_contig81:292180..296146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size438
Model size1843
Exons4
Ec32 orthologEc-26_000240.1
Ec32 ortholog descriptionputative serine protease inhibitor
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001
Best eggNOG OGNA|NA|NA
Best tax levelfabids
COG Functional cat.S
EggNOG OGs37PME@33090,3G96Y@35493,4JEZU@91835,KOG1944@1,KOG1944@2759
EggNOG free text desc.Mpv17 / PMP22 family
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0016020,GO:0016021,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
KEGG Pathwayko04146,map04146
KEGG koko:K13348
Seed eggNOG ortholog4006.Lus10032655
Seed ortholog evalue1.2e-07
Seed ortholog score63.2
Taxonomic scopeViridiplantae
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig81.16320.1prot_E-siliculosus-1a_M_contig81.16320.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig81 292180..294741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936239.4750476-CDS-E-siliculosus-1a_M_contig81:292179..2922401622936239.4750476-CDS-E-siliculosus-1a_M_contig81:292179..292240Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 292180..292240 +
1696250986.3729777-CDS-E-siliculosus-1a_M_contig81:292179..2922401696250986.3729777-CDS-E-siliculosus-1a_M_contig81:292179..292240Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 292180..292240 +
1622936239.5020635-CDS-E-siliculosus-1a_M_contig81:292888..2930951622936239.5020635-CDS-E-siliculosus-1a_M_contig81:292888..293095Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 292889..293095 +
1696250986.3852336-CDS-E-siliculosus-1a_M_contig81:292888..2930951696250986.3852336-CDS-E-siliculosus-1a_M_contig81:292888..293095Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 292889..293095 +
1622936239.54021-CDS-E-siliculosus-1a_M_contig81:293907..2939841622936239.54021-CDS-E-siliculosus-1a_M_contig81:293907..293984Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 293908..293984 +
1696250986.396176-CDS-E-siliculosus-1a_M_contig81:293907..2939841696250986.396176-CDS-E-siliculosus-1a_M_contig81:293907..293984Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 293908..293984 +
1622936239.5640814-CDS-E-siliculosus-1a_M_contig81:294648..2947411622936239.5640814-CDS-E-siliculosus-1a_M_contig81:294648..294741Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 294649..294741 +
1696250986.4145758-CDS-E-siliculosus-1a_M_contig81:294648..2947411696250986.4145758-CDS-E-siliculosus-1a_M_contig81:294648..294741Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig81 294649..294741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936239.5855038-UTR-E-siliculosus-1a_M_contig81:294741..2961461622936239.5855038-UTR-E-siliculosus-1a_M_contig81:294741..296146Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 294742..296146 +
1696250986.4287689-UTR-E-siliculosus-1a_M_contig81:294741..2961461696250986.4287689-UTR-E-siliculosus-1a_M_contig81:294741..296146Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig81 294742..296146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig81.16320.1

>prot_E-siliculosus-1a_M_contig81.16320.1 ID=prot_E-siliculosus-1a_M_contig81.16320.1|Name=mRNA_E-siliculosus-1a_M_contig81.16320.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=146bp
MRFASFPKATTLLLAATLLSAPMAEAGHAGEAGMEKAKEASSRGLAEEGV
TEEVMVGERPRSHPHEKEKKQRKPRMATMGVQQTWKECVGMDVEEAVEMI
KAARPDLRKIAKVPEGAMVTMDMRTDRVRIYYDKENIVTRPPRVG*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig81:292180..296146+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig81.16320.1 ID=mRNA_E-siliculosus-1a_M_contig81.16320.1|Name=mRNA_E-siliculosus-1a_M_contig81.16320.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3967bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig81:292180..296146+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTTTCGCGTCTTTCCCGAAAGCCACCACTCTTCTCCTAGCAGCAAC
GCTACTTTCCGGTGAGGTTTTCGTCCGTTCGTCAGAGCTGACTGCATTGC
GTACCTAAATATAGAGGGCATCGAAGATGTGTTCACTTTGAACAAAGCCG
CAGCTTTTTTCTCTCTGCGACTTGTAGACGAGGTTCCTTTGTGTCGGTAT
GTAAAATAGCACAAAATGCGAGCCACCGAGGGCAAATTGCACAGCAGCAG
TTTGTACAGCAGCAGCTGTGCATACGTGCCGTTAGTGTGGCGTTGTGGAC
ACCGACAAGTTCCGAACACAACAAGGCAGGTCTGTCTCAGTATCGGCAGC
ATAAGTCAATCCTGTTGTGGTGTTTTTGTGCCCACCCGCCAAAGGACATC
ACTCCTGTACATGCAGCCCGCAGACACCGTCAACACCCTATTGTCCAGCA
GTAAGCGGGACCTACCTCTGGTTAGGCCGACGGTGGGGTCATTCAGGTGT
CTAGGGTATAAGTGGCCTATTGTTGTTCGTGTAAGGGTTTTTGGCCGGGC
TTACAAGCGGTGCCCAAGTTGTGATGTTTAGATATTTGTGGAGCATTGTC
TTGCATTGTAGCTAAATACGTATGCGTTCGTATGTACCAAGTTCGTCAAG
TGAATAACGGTATACTTTTGTGTGCATTGCTTGTTCGCATGTATTGCATC
TGGCGGCAGCACCAATGGCGGAGGCAGGCCACGCGGGAGAGGCCGGGATG
GAAAAGGCAAAGGAGGCCAGCAGCAGAGGGCTTGCCGAGGAGGGAGTGAC
GGAGGAGGTCATGGTGGGCGAACGGCCGAGGTCACACCCACACGAGAAGG
AAAAGAAGCAGCGCAAGCCGCGGATGGCGACGATGGGAGTGCAGCAGACA
TGGAAAGAATGCGTCGGTGAGGGATGAGGGCAATGTTGTTGTTTTTGTTG
TTGTCTTCACATTACAAAAACACGTTCCGGTCTCCGCTAAGTACCTTCTA
CCACGTTCCAACTTTCGCGTGCGTGTCTTGATTTTTCAAGTAGCATCGAC
CGCGCTAACCGGCTGACCAATGAAACGACATCAGTCTCGGTGAGGCTGAA
CACAGAACATGTTTCTCAAGGCCATTCGTGCGTGTGGGTGCGGCGGCGTC
CGGAGCCGTTCATTGCTTCGCACAAGTACATGTCGGAGATGTCGGAGATG
ACCAGCAGGGTCAGGGCCTGCCTCACTCTACGCCCCCTTCTCCCTGTCGT
GTGTTCAGCATCTCGATAGTTACTGTTCAGTAGAAGGTTACCATGCACCG
CAGCAGCCCATGTGGTATTGTATTTTCGCAAGCTATTATGCGGTTTCCAA
CGCTTGCGTGGGGTATTGATGTGCCTGAGCTTTTGAGTGTTGCAAGTCCA
CCTATTGTATCACGTCTGGCTCGTTTGGCCTCGATTTCTTTCCGTGGCGG
AATAATACGTGCTGTGTCGACAGTTGTGCGTGCGGCGCATTATCCTTGGC
GAGAATATTTATCTTGGTTTTAGTAGGGTTTACGGGTGTGGGGGTCAGGG
TTAGGGTTAATGTTGGGGTCACCAAACCCCCTTCTCTTTATCTCATCGAT
TATATCTACTAGGTCCGTGCGGCGTATGCTGGCTGCTACAGGTCGATGGA
CAAGTACTCCCCCCTCCGAATCCCCTCTGAAGAGTTGATTTGTGTACAAT
ATACGTGCCTTTTCTGCTGCCTTGACAGGCATGGATGTGGAGGAGGCGGT
GGAGATGATCAAGGCCGCACGACCGGACCTGAGGAAAATCGCCAAGGTCC
CGGAGGTGAGTCACCTGAAACGGTCGGTACCTATCCCACGGCATTGCCGT
CTCGTGACTGGATGCCCCCCTGTGTACTTGAATGCCGCGGAGCTGTAATG
TTTTTGATCGCCTCGTTTCCCAGTGCACCGATCCCGTCGATGTGCATTTG
TCCCGCCAAGGTTTTTTGTGTGGCATGGCAAAACGCCCTGCGTGCCATGT
GATGGTGGAACCGGTTGGTTACTCAAGCGTAGTCCAGGGGATGGTTGTCT
CCCTTTCCCTGTGTTGATGAAGTCACCTCATTGATTCGCAGCGTGTTCTG
AGGAACGATGTAGGAGTCTTGCCTGTTGGTGGTCGTACACCTTTATTTCT
CCATGTCGAGTTCGTTACGGAAGTTTCTGCGTTTTCATCGATAATTTTGA
GTTCAAAATGTAGATGCTTGCTTTTCGTATTTCAGATTGAAAGGAAGTTA
AAAGGGGTGGGCGAAGGACCATTTCCTGACTTGATCGTGTTTGCTCCAAA
AGGGGTGAATTCGTTGCTCTACTTTGTGAGATAATCTGTGCGCCCCCTGC
CTGTGGGTTGATCTGTCTGACACGAAGGACGTTGTCCCTGCGGTCTTGTC
CTGCCTTGCCGGCATGTCGTGTTCCGGGCCTCCCCTCCCTTGCCCCGCTC
GTGCGTGACGCCTTTGCAGGGCGCCATGGTGACGATGGACATGCGCACGG
ACCGCGTGAGGATCTACTACGACAAGGAGAACATCGTCACCCGCCCACCA
CGCGTAGGCTAACGCCGCACAGCTCAACGCGCAGCGTATAGCCTGCAACC
AAAACCAAAGGAAGCTAGACCTACTACCCACGCTACACGCTACGCGCGCT
CGCGGGAAGGAACGGCGCTACCGAGCTGGGCATCACGCCATCTGCCGGCT
CAATACGGACCATTATTCGGAGAGATGATGGTGACGTCGTGCTGATATTG
TTGTGCTTGGGACGACCGCGCCCGTTTTGTTCTATGCCGTCTATCGTTGG
GGCGGGGGTTTGAGAGCAGTTCAGCGGTCTGTTTTTGTTTTCCATTTTCT
CCTCACGTAGTTGGATGATGGATGGTTTTTGTTGGTGTGTGTTTCGCTCC
TTGTTCCCCATATAGATGGCACACGGCTCTCCTGACGGTTGAAATGCACA
ACTCTACTACCCACCTACGCTGGCGTACAGTGTACAGCAGCGCGATCCAC
ACGGCAGGGTGGCGTGAGGTAAAGGTTGGGCCTTTCGATTTAGATAAGTT
TGCCGTACACACCTCATGGCGTTGTCTGAGCGCGTCGGTTCGCTAGCCCC
CATCATCGTGACCGGTGCCTTCGCTCTGGAGGCTAGCGCAAGGCGGGAAG
ATTTCGCTGGGGTTCAGTTTTTGGCGGCTGCGTTTGAACCCGTTGGTTCT
CGCAGCATGTGTAGTAAGTTTCGAGCACGCGTGCTGTTGTGTGTGTGTTG
GCGCGGAGCCCGCGTTTTTCATCTTGCTGTGTGAAGTTCGTATGCATATG
TAGACTAGCCATGCCCGACACGACGAGATATGTTGTGTAGTATCGACGGG
ACGGAAGTAAAGCCTCGTAGAATATTAGGAGTTTCGTGCGGAACAGATAG
AGGGCGCTGCGGCTCAAGGGTGCTCTGTTTGTGTGGGCTGCATGCGGGAG
TCTCTGTAGTGGTACACGTGACGACGTAGTGAAGTAGATGGTTGAGATTG
TTATTTGTGTAGTCGGCGCGGGAGACATGGCCGTTTGGGTGTGAAGCGTA
CAGTAGATGTTGGCGCTCTCGCACGCATGTATGCATGTGGCGAAGATGTG
TAGTTGTTTGGCTGCATGTTGCGAAGGTATATTGTTGATGGCTGCCGTAT
CGTCGTGCCGTGGTAAGAGAGAGCGCTAATAATGCGGTAAATGTGTGTCT
TCTGTCTTCCCCAAGGCCGTTTCCTTCCATTCTGTTCATTTGCGATGTTG
GGCGGCGCACTCAAAGGGGTCCATCTCCAGCAAGACAAAGCGCAGATCAA
ACAACCGAAGTCCCACAAAAAAAATCGAAAATAGATCCAAGAGGCAGCAA
TGGGCCGCCACACCTCCATCAGTAGTTGACCCTGTATGAGGCCGCATACC
GTAGGTGACATGAGATACAACACCCCCTTGACCGATTTTCAAAGCTGGAT
TACTTCACCATGAAGAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig81:292180..296146+

>mRNA_E-siliculosus-1a_M_contig81.16320.1 ID=mRNA_E-siliculosus-1a_M_contig81.16320.1|Name=mRNA_E-siliculosus-1a_M_contig81.16320.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig81:292180..296146+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGTTTCGCGTCTTTCCCGAAAGCCACCACTCTTCTCCTAGCAGCAAC
GCTACTTTCCGATGCGTTTCGCGTCTTTCCCGAAAGCCACCACTCTTCTC
CTAGCAGCAACGCTACTTTCCGCACCAATGGCGGAGGCAGGCCACGCGGG
AGAGGCCGGGATGGAAAAGGCAAAGGAGGCCAGCAGCAGAGGGCTTGCCG
AGGAGGGAGTGACGGAGGAGGTCATGGTGGGCGAACGGCCGAGGTCACAC
CCACACGAGAAGGAAAAGAAGCAGCGCAAGCCGCGGATGGCGACGATGGG
AGTGCAGCAGACATGGAAAGAATGCGTCGCACCAATGGCGGAGGCAGGCC
ACGCGGGAGAGGCCGGGATGGAAAAGGCAAAGGAGGCCAGCAGCAGAGGG
CTTGCCGAGGAGGGAGTGACGGAGGAGGTCATGGTGGGCGAACGGCCGAG
GTCACACCCACACGAGAAGGAAAAGAAGCAGCGCAAGCCGCGGATGGCGA
CGATGGGAGTGCAGCAGACATGGAAAGAATGCGTCGGCATGGATGTGGAG
GAGGCGGTGGAGATGATCAAGGCCGCACGACCGGACCTGAGGAAAATCGC
CAAGGTCCCGGAGGCATGGATGTGGAGGAGGCGGTGGAGATGATCAAGGC
CGCACGACCGGACCTGAGGAAAATCGCCAAGGTCCCGGAGGGCGCCATGG
TGACGATGGACATGCGCACGGACCGCGTGAGGATCTACTACGACAAGGAG
AACATCGTCACCCGCCCACCACGCGTAGGCTAAGGCGCCATGGTGACGAT
GGACATGCGCACGGACCGCGTGAGGATCTACTACGACAAGGAGAACATCG
TCACCCGCCCACCACGCGTAGGCTAA
back to top