mRNA_E-siliculosus-1a_M_contig80.16294.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16294.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16294.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:747825..748364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size336
Model size540
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16294.1prot_E-siliculosus-1a_M_contig80.16294.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 747898..748233 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936204.2756085-UTR-E-siliculosus-1a_M_contig80:747824..7478971622936204.2756085-UTR-E-siliculosus-1a_M_contig80:747824..747897Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 747825..747897 +
1696250976.246976-UTR-E-siliculosus-1a_M_contig80:747824..7478971696250976.246976-UTR-E-siliculosus-1a_M_contig80:747824..747897Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 747825..747897 +
1622936204.3028858-UTR-E-siliculosus-1a_M_contig80:748233..7483641622936204.3028858-UTR-E-siliculosus-1a_M_contig80:748233..748364Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 748234..748364 +
1696250976.2676692-UTR-E-siliculosus-1a_M_contig80:748233..7483641696250976.2676692-UTR-E-siliculosus-1a_M_contig80:748233..748364Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 748234..748364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936204.2908566-CDS-E-siliculosus-1a_M_contig80:747897..7482331622936204.2908566-CDS-E-siliculosus-1a_M_contig80:747897..748233Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 747898..748233 +
1696250976.2575903-CDS-E-siliculosus-1a_M_contig80:747897..7482331696250976.2575903-CDS-E-siliculosus-1a_M_contig80:747897..748233Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 747898..748233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16294.1

>prot_E-siliculosus-1a_M_contig80.16294.1 ID=prot_E-siliculosus-1a_M_contig80.16294.1|Name=mRNA_E-siliculosus-1a_M_contig80.16294.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=112bp
MTGQQVQPTLLQPANIYTDEVKPHLLVKLRGKNLRREYVWYQTTAACKHT
SCPTHHDCQQQQGQDEIILATQRTETQASKLECWLHKKWDFLTNVYEGEI
DGDHGHEVVSV*
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mRNA from alignment at E-siliculosus-1a_M_contig80:747825..748364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16294.1 ID=mRNA_E-siliculosus-1a_M_contig80.16294.1|Name=mRNA_E-siliculosus-1a_M_contig80.16294.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=540bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:747825..748364+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGACAAATCGAAGAAACATATTAGCAGATAAACCAAACTTCGGGGATACG
AAAACCCTGCAAATATTAGTTTGATGACAGGACAACAAGTGCAACCAACC
CTCTTGCAGCCAGCCAATATCTATACCGACGAAGTAAAACCCCACTTACT
TGTAAAATTGCGTGGGAAAAACCTCCGCCGGGAATATGTATGGTACCAAA
CAACTGCTGCATGCAAGCACACCTCCTGTCCCACACACCATGACTGCCAG
CAGCAGCAGGGGCAAGACGAAATAATATTAGCAACGCAAAGGACAGAAAC
GCAAGCAAGCAAGCTTGAATGCTGGTTGCACAAGAAATGGGACTTCCTTA
CCAACGTGTACGAGGGGGAGATAGATGGAGACCACGGTCACGAAGTAGTA
TCTGTCTAGTACTCCGTTGAACGTTCGCCAAACCCAACACGAACACCTGC
CCATCACCTACACGCGGTAGGCTACCGGGGGTGGTATTATAGTACCTGCA
ATACTGTAGCAGCAGCACGACATCAAACTGGAGGCAGGAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:747825..748364+

>mRNA_E-siliculosus-1a_M_contig80.16294.1 ID=mRNA_E-siliculosus-1a_M_contig80.16294.1|Name=mRNA_E-siliculosus-1a_M_contig80.16294.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:747825..748364+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACAGGACAACAAGTGCAACCAACCCTCTTGCAGCCAGCCAATATCTA
TACCGACGAAGTAAAACCCCACTTACTTGTAAAATTGCGTGGGAAAAACC
TCCGCCGGGAATATGTATGGTACCAAACAACTGCTGCATGCAAGCACACC
TCCTGTCCCACACACCATGACTGCCAGCAGCAGCAGGGGCAAGACGAAAT
AATATTAGCAACGCAAAGGACAGAAACGCAAGCAAGCAAGCTTGAATGCT
GGTTGCACAAGAAATGGGACTTCCTTACCAACGTGTACGAGGGGGAGATA
GATGGAGACCACGGTCACGAAGTAGTATCTGTCTAGATGACAGGACAACA
AGTGCAACCAACCCTCTTGCAGCCAGCCAATATCTATACCGACGAAGTAA
AACCCCACTTACTTGTAAAATTGCGTGGGAAAAACCTCCGCCGGGAATAT
GTATGGTACCAAACAACTGCTGCATGCAAGCACACCTCCTGTCCCACACA
CCATGACTGCCAGCAGCAGCAGGGGCAAGACGAAATAATATTAGCAACGC
AAAGGACAGAAACGCAAGCAAGCAAGCTTGAATGCTGGTTGCACAAGAAA
TGGGACTTCCTTACCAACGTGTACGAGGGGGAGATAGATGGAGACCACGG
TCACGAAGTAGTATCTGTCTAG
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