mRNA_E-siliculosus-1a_M_contig80.16263.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16263.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16263.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:426787..428153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size576
Model size576
Exons3
Ec32 orthologEc-08_000520.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16263.1prot_E-siliculosus-1a_M_contig80.16263.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 426787..428153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936215.9639325-CDS-E-siliculosus-1a_M_contig80:426786..4270051622936215.9639325-CDS-E-siliculosus-1a_M_contig80:426786..427005Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 426787..427005 -
1696250980.612178-CDS-E-siliculosus-1a_M_contig80:426786..4270051696250980.612178-CDS-E-siliculosus-1a_M_contig80:426786..427005Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 426787..427005 -
1622936215.9776514-CDS-E-siliculosus-1a_M_contig80:427322..4274061622936215.9776514-CDS-E-siliculosus-1a_M_contig80:427322..427406Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 427323..427406 -
1696250980.6200974-CDS-E-siliculosus-1a_M_contig80:427322..4274061696250980.6200974-CDS-E-siliculosus-1a_M_contig80:427322..427406Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 427323..427406 -
1622936215.9929879-CDS-E-siliculosus-1a_M_contig80:427880..4281531622936215.9929879-CDS-E-siliculosus-1a_M_contig80:427880..428153Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 427881..428153 -
1696250980.6309562-CDS-E-siliculosus-1a_M_contig80:427880..4281531696250980.6309562-CDS-E-siliculosus-1a_M_contig80:427880..428153Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 427881..428153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16263.1

>prot_E-siliculosus-1a_M_contig80.16263.1 ID=prot_E-siliculosus-1a_M_contig80.16263.1|Name=mRNA_E-siliculosus-1a_M_contig80.16263.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=192bp
MPIQIINSGVKLTPEPNTISTVVARNETGVICRVSASLLTRRTRRFSHQG
LVDGSDGGGGIDRQADGGDGGQASAGQASSPYDMTSVFGLKVQRMKAEEL
AAEEQSKRKIKSSAPQSTAKQPEQEEGGENPSGEPGTENDGEEVVPADVW
IKRSRGGAHKRLPAHTALTDRVRQGNDLVSARRAMDASLYP*
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mRNA from alignment at E-siliculosus-1a_M_contig80:426787..428153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16263.1 ID=mRNA_E-siliculosus-1a_M_contig80.16263.1|Name=mRNA_E-siliculosus-1a_M_contig80.16263.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1367bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:426787..428153- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGATCCAAATCATCAACAGCGGGGTGAAATTAACCCCTGAACCCAA
CACGATCAGCACCGTCGTTGCACGGAATGAAACCGGAGTCATCTGCCGAG
TTTCCGCCAGTCTTCTAACCCGAAGGACCAGGCGATTTAGCCACCAGGGC
TTGGTAGATGGGTCCGATGGAGGCGGAGGCATCGATCGACAGGCGGATGG
TGGGGATGGTGGGCAAGCATCAGCTGGACAAGCTTCTTCACCGTACGACA
TGACGAGTGTCTTCGGGCTAAAGGTAGGACACAGCCGTGTAGACTGTGTA
TGTACTCACAATGTGGTGAAGGGTACTCTGCAAGTCAAATGTGTGTGTTC
GTCCGATCCAGTCTGGCGCCAGTCCACACGCCTTCACGCCTTTCGATGCT
ATGTTGACGTGTCAACCGAGTTGGAAGCTTCTCGTATTTTGACGTTGTGC
TTTCTACGCATCGGGATGTAATAATGCGACGCTTTCGCGGGAAGCACGGT
GAAACCATATCACAGGGCGGGTGTGTGTAATCCACAGAGGATCACTCGAG
ATAACGTGTAGATGACATCAATTCGCAATTCTTCTCCTTCACCCAACCAC
TGCCTCTTCCGTGCTTCGTTTTGCGAAGAAGCGCGAGACAGATGACAGCC
AGCCACTGTCGATTGCTTGTTTCCTATATTCTACTCTACGTCATGTGACC
ATACGACGTACGTGGCGCGGAACATAATCCTGCGGGTGGTTCTGAAGGTG
CAGAGGATGAAAGCGGAGGAGCTTGCCGCCGAGGAGCAAAGCAAGCGCAA
GATCAAGAGTTCTGCTCCTCAGTCGACAGCGGTCAGTGATGTATGTCCTG
CTGCTGTAGTACGTAGCTTACACACACGAAGAAGATAGATGCACCAGCCA
TGGTCACCAACGAGAGGGAGGTAACACGGAAGGGTTGTTTTACACCAGGA
GGGTTGTTTTACACCACCTCCCTTCTGCGGTGCTCAACTTTTCTTTTTCC
TCCTCAACCGTGAAGTCGATTTTTTTACCCCCAGGAACGAGCCCTTTTCC
ATGTACGGACAACATCCAGTAGCTTTCGACCGAGGTAGTCATGCGAAACG
CCGGATTCTATCGTGCGTCTCTTTCCACGTGATACGACGACGCGCCAGAA
ACAACCCGAGCAGGAAGAAGGCGGCGAAAATCCATCAGGCGAACCAGGAA
CGGAGAATGACGGGGAGGAGGTTGTTCCAGCTGATGTGTGGATCAAACGA
TCTAGGGGCGGCGCTCATAAGCGGCTGCCCGCGCACACGGCGCTGACGGA
CCGTGTCAGACAAGGCAACGACCTAGTAAGCGCTCGTCGTGCGATGGACG
CATCACTGTACCCGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:426787..428153-

>mRNA_E-siliculosus-1a_M_contig80.16263.1 ID=mRNA_E-siliculosus-1a_M_contig80.16263.1|Name=mRNA_E-siliculosus-1a_M_contig80.16263.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:426787..428153- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGATCCAAATCATCAACAGCGGGGTGAAATTAACCCCTGAACCCAA
CACGATCAGCACCGTCGTTGCACGGAATGAAACCGGAGTCATCTGCCGAG
TTTCCGCCAGTCTTCTAACCCGAAGGACCAGGCGATTTAGCCACCAGGGC
TTGGTAGATGGGTCCGATGGAGGCGGAGGCATCGATCGACAGGCGGATGG
TGGGGATGGTGGGCAAGCATCAGCTGGACAAGCTTCTTCACCGTACGACA
TGACGAGTGTCTTCGGGCTAAAGATGCCGATCCAAATCATCAACAGCGGG
GTGAAATTAACCCCTGAACCCAACACGATCAGCACCGTCGTTGCACGGAA
TGAAACCGGAGTCATCTGCCGAGTTTCCGCCAGTCTTCTAACCCGAAGGA
CCAGGCGATTTAGCCACCAGGGCTTGGTAGATGGGTCCGATGGAGGCGGA
GGCATCGATCGACAGGCGGATGGTGGGGATGGTGGGCAAGCATCAGCTGG
ACAAGCTTCTTCACCGTACGACATGACGAGTGTCTTCGGGCTAAAGGTGC
AGAGGATGAAAGCGGAGGAGCTTGCCGCCGAGGAGCAAAGCAAGCGCAAG
ATCAAGAGTTCTGCTCCTCAGTCGACAGCGGTGCAGAGGATGAAAGCGGA
GGAGCTTGCCGCCGAGGAGCAAAGCAAGCGCAAGATCAAGAGTTCTGCTC
CTCAGTCGACAGCGAAACAACCCGAGCAGGAAGAAGGCGGCGAAAATCCA
TCAGGCGAACCAGGAACGGAGAATGACGGGGAGGAGGTTGTTCCAGCTGA
TGTGTGGATCAAACGATCTAGGGGCGGCGCTCATAAGCGGCTGCCCGCGC
ACACGGCGCTGACGGACCGTGTCAGACAAGGCAACGACCTAGTAAGCGCT
CGTCGTGCGATGGACGCATCACTGTACCCGTAAAAACAACCCGAGCAGGA
AGAAGGCGGCGAAAATCCATCAGGCGAACCAGGAACGGAGAATGACGGGG
AGGAGGTTGTTCCAGCTGATGTGTGGATCAAACGATCTAGGGGCGGCGCT
CATAAGCGGCTGCCCGCGCACACGGCGCTGACGGACCGTGTCAGACAAGG
CAACGACCTAGTAAGCGCTCGTCGTGCGATGGACGCATCACTGTACCCGT
AA
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