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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig80.16262.1 vs. uniprot
Match: D7FP78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP78_ECTSI) HSP 1 Score: 482 bits (1241), Expect = 3.970e-167 Identity = 277/302 (91.72%), Postives = 280/302 (92.72%), Query Frame = 1
Query: 577 MSARRAGPGSPVMASASAKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRRMMDTVKIAAAGEGKRTFESVAKVMRRQVAAKQRADEATSLEGSWFPSVMRRMLIMVQGKEGGDVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKRAVQRANQKRAHKKGVSKKSHLGXXXXXXXXXXXXXXXXRRLVGAEEXXXALEGXXXXXXXXVSIKYVGGAGAGNVSDAGSDDMSDTMSVFSVSTQLGGGQAT 1482
MSARRAGPGSPVM SASAKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRRMMDTVKIAAAGEGKRTFESV KVMRRQVAAKQRADEATSLEGSWFPSVMRRMLIMVQGKEGG+VPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLK+AVQRANQKRAHKKGVSKKSHLGXXXXXXXXXXXXXXXX ALEG VSIKY+GGAG GNVSDAGSDDMSDTMSVFSVSTQLGGGQAT
Sbjct: 1 MSARRAGPGSPVMVSASAKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRRMMDTVKIAAAGEGKRTFESVPKVMRRQVAAKQRADEATSLEGSWFPSVMRRMLIMVQGKEGGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKQAVQRANQKRAHKKGVSKKSHLGXXXXXXXXXXXXXXXXXXXX-------ALEGGHGHGSSAVSIKYIGGAGVGNVSDAGSDDMSDTMSVFSVSTQLGGGQAT 295
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 1485 |
| Model size | 1485 |
| Exons | 6 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936215.8384526-CDS-E-siliculosus-1a_M_contig80:420931..421438 | 1622936215.8384526-CDS-E-siliculosus-1a_M_contig80:420931..421438 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 420932..421438 - |
| 1696250980.5517058-CDS-E-siliculosus-1a_M_contig80:420931..421438 | 1696250980.5517058-CDS-E-siliculosus-1a_M_contig80:420931..421438 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 420932..421438 - |
| 1622936215.8605635-CDS-E-siliculosus-1a_M_contig80:421702..421852 | 1622936215.8605635-CDS-E-siliculosus-1a_M_contig80:421702..421852 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 421703..421852 - |
| 1696250980.5597298-CDS-E-siliculosus-1a_M_contig80:421702..421852 | 1696250980.5597298-CDS-E-siliculosus-1a_M_contig80:421702..421852 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 421703..421852 - |
| 1622936215.876375-CDS-E-siliculosus-1a_M_contig80:422274..422337 | 1622936215.876375-CDS-E-siliculosus-1a_M_contig80:422274..422337 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 422275..422337 - |
| 1696250980.5676231-CDS-E-siliculosus-1a_M_contig80:422274..422337 | 1696250980.5676231-CDS-E-siliculosus-1a_M_contig80:422274..422337 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 422275..422337 - |
| 1622936215.8887522-CDS-E-siliculosus-1a_M_contig80:422909..423047 | 1622936215.8887522-CDS-E-siliculosus-1a_M_contig80:422909..423047 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 422910..423047 - |
| 1696250980.575635-CDS-E-siliculosus-1a_M_contig80:422909..423047 | 1696250980.575635-CDS-E-siliculosus-1a_M_contig80:422909..423047 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 422910..423047 - |
| 1622936215.9011118-CDS-E-siliculosus-1a_M_contig80:423614..423747 | 1622936215.9011118-CDS-E-siliculosus-1a_M_contig80:423614..423747 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 423615..423747 - |
| 1696250980.5835981-CDS-E-siliculosus-1a_M_contig80:423614..423747 | 1696250980.5835981-CDS-E-siliculosus-1a_M_contig80:423614..423747 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 423615..423747 - |
| 1622936215.918168-CDS-E-siliculosus-1a_M_contig80:424143..424637 | 1622936215.918168-CDS-E-siliculosus-1a_M_contig80:424143..424637 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 424144..424637 - |
| 1696250980.591514-CDS-E-siliculosus-1a_M_contig80:424143..424637 | 1696250980.591514-CDS-E-siliculosus-1a_M_contig80:424143..424637 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 424144..424637 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig80.16262.1 >prot_E-siliculosus-1a_M_contig80.16262.1 ID=prot_E-siliculosus-1a_M_contig80.16262.1|Name=mRNA_E-siliculosus-1a_M_contig80.16262.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=495bp
MDRKLARRPRKPSSDGVVRGSKRVRNSSNSSISHLGHRTIVAVSTVDAFA HGGMPHSSGSGSVNGSGSGPATTAGSVAVPRIAGLGGKSNDGRGGARQQQ QQKKKNQGAGSGIASEGSQQGVTATAVAVAAVAAAAALAGPPTGEGKASG ASGHRSPPRGTLTARSAPAATGGGVRFSRPHGGRGSGAASGSMSARRAGP GSPVMASASAKKELKAAVKAYVLRQVSLDKDLSESISRRDFDWDEDMRRM MDTVKIAAAGEGKRTFESVAKVMRRQVAAKQRADEATSLEGSWFPSVMRR MLIMVQGKEGGDVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPE DHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKRAVQRANQK RAHKKGVSKKSHLGGGGGGGGGGGGGGGSSRRLVGAEEGGGALEGGHGHG SSAVSIKYVGGAGAGNVSDAGSDDMSDTMSVFSVSTQLGGGQAT* back to topmRNA from alignment at E-siliculosus-1a_M_contig80:420932..424637- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig80.16262.1 ID=mRNA_E-siliculosus-1a_M_contig80.16262.1|Name=mRNA_E-siliculosus-1a_M_contig80.16262.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3706bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:420932..424637- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGACAGGAAGCTGGCGCGACGTCCTCGAAAGCCTTCCAGCGACGGGGT
GGTTCGTGGATCTAAAAGAGTACGAAACAGCAGCAACTCTTCCATTTCCC
ACCTCGGCCACCGCACCATAGTCGCGGTATCGACGGTCGACGCATTCGCG
CACGGCGGCATGCCACACAGCAGCGGCAGCGGCAGCGTAAACGGCAGCGG
CAGCGGCCCGGCGACAACGGCGGGGTCAGTGGCGGTGCCACGGATAGCAG
GGCTTGGAGGGAAGTCAAACGATGGGCGCGGGGGTGCGAGGCAGCAGCAA
CAGCAGAAGAAGAAAAACCAGGGTGCCGGTTCGGGAATCGCGTCCGAGGG
GTCGCAGCAAGGGGTAACAGCGACAGCAGTAGCGGTGGCAGCGGTGGCGG
CAGCGGCGGCGTTAGCGGGGCCTCCGACCGGAGAGGGTAAGGCGTCGGGC
GCAAGCGGCCACCGCTCACCGCCGAGAGGAACGCTGACAGCCAGGTGAGG
GATTTGTTCCTTCCCGACCCGTACAATAGCTTGGAATCCAAATCAACGCA
CCGGTTTGTTGGGCAGTCGGTAACCGTGAAACTACGGCTGGAGTCGTATC
AAAATGTTCGTGATCACTGTTGTGCCCGCGACGAGGTCAACGTTTCGAAA
GAGAAGGCATAAAGAACAGTTTTGCATGGTTTCCCACGTAAGTATTGTCT
CCGTACATATGACGGTGAACTTCTCCCTCGCCCCCGAGTACGTACAACTT
CACCGGCACGACGCCCTTCTGTCTCCCCATCTGGGCGGGGTGCATCGAGC
CTGCATCGCCCTGCACAGCAATGTGGTACCATACAATCCGTCCTTACCCA
GTGGCCGCGTGCGCGCCGCGCATGTTGCACACACCGCTAGGTCTGCTCCG
GCCGCCACTGGAGGGGGAGTTCGCTTTTCACGGCCACACGGCGGTCGCGG
TAGCGGGGCGGCGTCTGGGTCGATGAGCGCCAGGAGGGCGGGGCCTGGGT
CCCCGGTCATGGCGTCCGCATCGGTGAGGACGGCAGTCAGTCCCGGTTCG
GCCGCCGAGCTGCCCGCAGAACAGCAGTGTTCGGTGCCGTGGGTTCTCAG
CAGTGGGGGTAGCCGCTTCCCCTTTCTCGACTCACGAACACCGGAGAGAA
GGTGGAAAAGGTGGCTCTGGGACCATTGCGTCGAGGACCATCTTTCGAAA
CAATTTCCACGCTCTTGCTTCGACGCTCTCCGTGCGGCGATCGGGAGTTA
GAAGAACGATCCGACTTCCCCGTTGCGTACGATGGTGCACGATCACTGGA
TGAAATAGGGACCGATGTGTTGTGTTTTTTCCAGGGTACATCGATTTGCT
CTGTTCCATTTTCGCCACAGGCGATGTCGGGTACTTCTTATAGTATAAAC
CCTGGTTAGGTAAACCGTCGTTGTGGGGTCATTACACACCCCTTGCGCAC
CGCGTATCTACCTCAACTCAGGTGGGCCGGCCGTTGAATCGAACTGCGCC
AACATGTCTTGCAAAGCTATTCAAGGCCACCGCGTATGTACGCACGTATC
CCAGTGTGCCCTGCCATTTTCTTGCGACACGCTCATCCAGGCGAAGAAGG
AATTGAAGGCAGCCGTCAAGGCGTACGTTCTGCGGCAGGTCAGCCTGGAC
AAGGACTTGTCAGAATCTATCAGCCGGAGAGACTTCGACTGGGACGAGGA
CATGAGGAGAATGATGGACACTGTCAAGGTACGGTTTCATGCAGCCCTAC
GACCTCTACCCTCAAACCGCTGCCCCCAACTGTGACAACATCCCTTGGAG
GCTACATTGTCGGTACAAGTCCTTCGTGTTTCATTTGAACTGCTGTACCT
CGCGTAAGCTTGTTCGAGTTTGGAAGTCACCGAAATAGTCCGCGGGAATG
ACCAGTCATACGTAGCTAAATAGGAACTAAAAAAATCGGACATAACGAGC
GCCTGCAGGCGAGTTTACTCCGTAGATACACCGTTGGCCGTTGGCGAGCG
CCTTTGGCTACCTCTGGGAAAAGCTCAATCAAGCGGCAGCGTGCAACACT
ATGCTTCTCCCCAATCTCTCAAAAAGAAACCCGTTGCAGTAATGCCTCCC
CCCCCAACTTTTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAAT
GTTGGTGGTGTCTCTAGTAGGGGTAGGAACGGTGCTCCGTCTCGAAAGGG
ACGCGTGGTCAATGGTCAAATGACTACGGCAAGCAACAAATGAGTACGCC
CCCCCCGGCTATCACCACTATTTTTTCGGTCCGTGCAACATATCCATCAG
ATTGCGGCAGCCGGAGAAGGAAAACGGACGTTTGAGAGCGTGGCCAAGGT
CATGCGTCGGCAGGTGAAACAGAAAATCGTGTAGGTGCTTGATACCAACA
CTTCGCCGAGAAAAAGCCTGCACATTTAATTTCTATCTAAAGTGCCCCCC
ACTCCCAAAAGGCGGTAAGAATCTAGCGGTGCTGACAGACACCACAATTC
ACAGCCTTGAATTTATCTTGCAGAGAGACAGGTGTTTGTTGTAGCGCATA
GTGAAAAAAACTCAGGAACAGGAAATCTTCGTCGCTTCTCACATCAAATT
TGTGCGAAGATGCGATCGAGACACTCGACACTCTTGTGCCTGAAGTCACC
GCCACCACAACCAACGGGATGCTTTTACATTTCGTAGATGCAGGTAGTTG
CGGACCTACAACAACACCAAACGCCATACCACATCGAAAGCCACCCATCA
CAAACAAAACTCGCGGCGCTTCGTGGCTGACTCAGGTGGCTGCGAAGCAA
CGCGCTGACGAGGCGACTAGTCTGGAGGGGTCTTGGTTTCCGTCCGTGAT
GAGACGGATGCTAATCATGGTACAGGGAAAGGAAGGGGGTGATGTACCGC
GGTGCATGACCAAGCTTGCGGCTGCCTTGCACAAGGTACTGTGCCGTGAA
TCGGTGGCACGCTTGAGATGCTGGGGCATTGCTCAGCTCTCTGCACGCGC
GGTTTCGGTTTGGTGTTTCTTGTTCTGTTTATTAAATTGTGTATTGGATG
GGATGGGATGGGATGAAACAAGCAAGAAGCACAAGCACCGTCTTTCTGTG
CAGGTGCTTTGGCGTTCAAAAGTACCGTTGTCCGTTGTGGTGTAGCGAGC
GGCGGGCGACCAAAAAACGCCCTCCTTGCACCACATGATACTCCGACAGG
TGCTCACGAGCGGGCACGCGGTGACGCCGTACATCTTCTGGTCGCTGGTG
GGCGCCTCGTTCCTGCCGGAGGATCACCAGAACCCCCCCGCCCAGAAAAT
GATCCTCACCTGCTTGACCTTCGTCCACCAGCGGCGAGAAAACTACCACG
ACTTCCTGGTCGAACACTCCATAAAGGTGCCCAGCTCGCTGAAACGGGCC
GTGCAGAGGGCGAACCAAAAACGGGCCCACAAGAAAGGGGTCTCGAAGAA
GTCGCACCTTGGTGGCGGCGGTGGCGGAGGTGGCGGAGGTGGCGGCGGTG
GCGGTAGTTCTCGTCGGCTAGTCGGGGCGGAGGAAGGCGGTGGTGCGCTA
GAAGGCGGTCACGGTCATGGAAGCTCAGCCGTAAGCATCAAGTATGTTGG
CGGCGCGGGCGCGGGGAACGTCAGCGATGCCGGGAGCGACGACATGAGCG
ATACCATGTCTGTGTTCAGCGTCTCGACACAGCTCGGCGGTGGCCAAGCT
ACGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:420932..424637- >mRNA_E-siliculosus-1a_M_contig80.16262.1 ID=mRNA_E-siliculosus-1a_M_contig80.16262.1|Name=mRNA_E-siliculosus-1a_M_contig80.16262.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2970bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:420932..424637- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGACAGGAAGCTGGCGCGACGTCCTCGAAAGCCTTCCAGCGACGGGGT GGTTCGTGGATCTAAAAGAGTACGAAACAGCAGCAACTCTTCCATTTCCC ACCTCGGCCACCGCACCATAGTCGCGGTATCGACGGTCGACGCATTCGCG CACGGCGGCATGCCACACAGCAGCGGCAGCGGCAGCGTAAACGGCAGCGG CAGCGGCCCGGCGACAACGGCGGGGTCAGTGGCGGTGCCACGGATAGCAG GGCTTGGAGGGAAGTCAAACGATGGGCGCGGGGGTGCGAGGCAGCAGCAA CAGCAGAAGAAGAAAAACCAGGGTGCCGGTTCGGGAATCGCGTCCGAGGG GTCGCAGCAAGGGGTAACAGCGACAGCAGTAGCGGTGGCAGCGGTGGCGG CAGCGGCGGCGTTAGCGGGGCCTCCGACCGGAGAGGGTAAGGCGTCGGGC GCAAGCGGCCACCGCTCACCGCCGAGAGGAACGCTGACAGCCAGATGGAC AGGAAGCTGGCGCGACGTCCTCGAAAGCCTTCCAGCGACGGGGTGGTTCG TGGATCTAAAAGAGTACGAAACAGCAGCAACTCTTCCATTTCCCACCTCG GCCACCGCACCATAGTCGCGGTATCGACGGTCGACGCATTCGCGCACGGC GGCATGCCACACAGCAGCGGCAGCGGCAGCGTAAACGGCAGCGGCAGCGG CCCGGCGACAACGGCGGGGTCAGTGGCGGTGCCACGGATAGCAGGGCTTG GAGGGAAGTCAAACGATGGGCGCGGGGGTGCGAGGCAGCAGCAACAGCAG AAGAAGAAAAACCAGGGTGCCGGTTCGGGAATCGCGTCCGAGGGGTCGCA GCAAGGGGTAACAGCGACAGCAGTAGCGGTGGCAGCGGTGGCGGCAGCGG CGGCGTTAGCGGGGCCTCCGACCGGAGAGGGTAAGGCGTCGGGCGCAAGC GGCCACCGCTCACCGCCGAGAGGAACGCTGACAGCCAGGTCTGCTCCGGC CGCCACTGGAGGGGGAGTTCGCTTTTCACGGCCACACGGCGGTCGCGGTA GCGGGGCGGCGTCTGGGTCGATGAGCGCCAGGAGGGCGGGGCCTGGGTCC CCGGTCATGGCGTCCGCATCGGTCTGCTCCGGCCGCCACTGGAGGGGGAG TTCGCTTTTCACGGCCACACGGCGGTCGCGGTAGCGGGGCGGCGTCTGGG TCGATGAGCGCCAGGAGGGCGGGGCCTGGGTCCCCGGTCATGGCGTCCGC ATCGGCGAAGAAGGAATTGAAGGCAGCCGTCAAGGCGTACGTTCTGCGGC AGGTCAGCCTGGACAAGGACTTGTCAGAATCTATCAGCCGGAGAGACTTC GACTGGGACGAGGACATGAGGAGAATGATGGACACTGTCAAGGCGAAGAA GGAATTGAAGGCAGCCGTCAAGGCGTACGTTCTGCGGCAGGTCAGCCTGG ACAAGGACTTGTCAGAATCTATCAGCCGGAGAGACTTCGACTGGGACGAG GACATGAGGAGAATGATGGACACTGTCAAGATTGCGGCAGCCGGAGAAGG AAAACGGACGTTTGAGAGCGTGGCCAAGGTCATGCGTCGGCAGATTGCGG CAGCCGGAGAAGGAAAACGGACGTTTGAGAGCGTGGCCAAGGTCATGCGT CGGCAGGTGGCTGCGAAGCAACGCGCTGACGAGGCGACTAGTCTGGAGGG GTCTTGGTTTCCGTCCGTGATGAGACGGATGCTAATCATGGTACAGGGAA AGGAAGGGGGTGATGTACCGCGGTGCATGACCAAGCTTGCGGCTGCCTTG CACAAGGTGGCTGCGAAGCAACGCGCTGACGAGGCGACTAGTCTGGAGGG GTCTTGGTTTCCGTCCGTGATGAGACGGATGCTAATCATGGTACAGGGAA AGGAAGGGGGTGATGTACCGCGGTGCATGACCAAGCTTGCGGCTGCCTTG CACAAGGTGCTCACGAGCGGGCACGCGGTGACGCCGTACATCTTCTGGTC GCTGGTGGGCGCCTCGTTCCTGCCGGAGGATCACCAGAACCCCCCCGCCC AGAAAATGATCCTCACCTGCTTGACCTTCGTCCACCAGCGGCGAGAAAAC TACCACGACTTCCTGGTCGAACACTCCATAAAGGTGCCCAGCTCGCTGAA ACGGGCCGTGCAGAGGGCGAACCAAAAACGGGCCCACAAGAAAGGGGTCT CGAAGAAGTCGCACCTTGGTGGCGGCGGTGGCGGAGGTGGCGGAGGTGGC GGCGGTGGCGGTAGTTCTCGTCGGCTAGTCGGGGCGGAGGAAGGCGGTGG TGCGCTAGAAGGCGGTCACGGTCATGGAAGCTCAGCCGTAAGCATCAAGT ATGTTGGCGGCGCGGGCGCGGGGAACGTCAGCGATGCCGGGAGCGACGAC ATGAGCGATACCATGTCTGTGTTCAGCGTCTCGACACAGCTCGGCGGTGG CCAAGCTACGTGAGTGCTCACGAGCGGGCACGCGGTGACGCCGTACATCT TCTGGTCGCTGGTGGGCGCCTCGTTCCTGCCGGAGGATCACCAGAACCCC CCCGCCCAGAAAATGATCCTCACCTGCTTGACCTTCGTCCACCAGCGGCG AGAAAACTACCACGACTTCCTGGTCGAACACTCCATAAAGGTGCCCAGCT CGCTGAAACGGGCCGTGCAGAGGGCGAACCAAAAACGGGCCCACAAGAAA GGGGTCTCGAAGAAGTCGCACCTTGGTGGCGGCGGTGGCGGAGGTGGCGG AGGTGGCGGCGGTGGCGGTAGTTCTCGTCGGCTAGTCGGGGCGGAGGAAG GCGGTGGTGCGCTAGAAGGCGGTCACGGTCATGGAAGCTCAGCCGTAAGC ATCAAGTATGTTGGCGGCGCGGGCGCGGGGAACGTCAGCGATGCCGGGAG CGACGACATGAGCGATACCATGTCTGTGTTCAGCGTCTCGACACAGCTCG GCGGTGGCCAAGCTACGTGA back to top
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