mRNA_E-siliculosus-1a_M_contig80.16241.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16241.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16241.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: D7FRF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF4_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.470e-47
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFATAPTKDLYAPGTFKFEAQGEDDE 207
            MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFATAPTKDLYAPGTFKFEAQGEDDE
Sbjct:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFATAPTKDLYAPGTFKFEAQGEDDE 69
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: W4GNJ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNJ0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.020e-12
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLD 120
            MV  GQDAWR HP LTGC K+P PG GIA G+FA Y  +D
Sbjct:   25 MVLAGQDAWRSHPFLTGCIKKPIPGFGIAAGIFAVYLTVD 64
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: A0A024TWK1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWK1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.330e-12
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFA--TAPTKDLYAPGTFKFEAQGE 198
            MV  GQDAWR HP LTGC K+P PG G+A G+FA Y  +D        T+ +   +AP  +  E  GE
Sbjct:    1 MVLAGQDAWRSHPFLTGCIKKPVPGFGMAAGIFAVYLTVDTIANLGNKTSHSHAHHAPVVYVKEEIGE 68
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: A0A1V9Y7Y0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7Y0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.150e-12
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLD 120
            MV   QDAWRKHP L+ C K+PFPGLGIA G+F+ Y V+D
Sbjct:    1 MVLAHQDAWRKHPFLSNCSKKPFPGLGIAAGIFSVYLVVD 40
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: A0A662XPS6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPS6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.410e-12
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFATA----PTKDLYAPGTFKFE 186
            MV   QDAWRKHP +TGC K+PF GLG+A  +F  Y V+D     ++     P  D    G FKFE
Sbjct:    1 MVLAHQDAWRKHPFITGCGKKPFTGLGMASAIFGVYLVVDLITSRSSPHDPHPQMDYIPRGKFKFE 66
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: K3WAK3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAK3_GLOUD)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-11
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLD 120
            MV   QDAWRKHP ++GC K+PFPGLGIA  +F  Y V+D
Sbjct:    1 MVLAHQDAWRKHPFISGCAKKPFPGLGIASAIFGAYLVVD 40
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: A0A1V9ZKV8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKV8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.320e-10
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGY 108
            MV   QDAWRKHP LT C K+P PGLGIA G+F  Y
Sbjct:    1 MVLAHQDAWRKHPFLTNCTKKPLPGLGIAAGIFGVY 36
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: A0A067C913_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C913_SAPPC)

HSP 1 Score: 58.5 bits (140), Expect = 7.690e-10
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVL 117
            MV   QDAWRKHP L+ C K+P PGLGIA+G+F+ Y  +
Sbjct:    1 MVLAHQDAWRKHPFLSNCTKKPLPGLGIAVGIFSVYLAI 39
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: A0A2D4BKS1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKS1_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 1.000e-9
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLD 120
            MV   QDAWRKHP +TGC K+PF GLG A  +F  Y V D
Sbjct:    1 MVLAHQDAWRKHPFITGCAKKPFTGLGTASAIFGVYLVFD 40
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Match: A0A6A3NMB4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NMB4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.010e-9
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDG-TIKFATA-------PTKDLYAPGTFKFE 186
            MV   QDAWR HP ++GC K+PF GLG+A  +F  Y V+D  T +F++        P  D    G F++E
Sbjct:   32 MVLAHQDAWRSHPFISGCAKKPFTGLGLASAIFGVYLVVDTITTRFSSHGKEGGAHPEMDYVPRGKFQYE 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FRF4_ECTSI4.470e-47100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W4GNJ0_9STRA4.020e-1265.00Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024TWK1_9STRA4.330e-1245.59Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9Y7Y0_9STRA6.150e-1265.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A662XPS6_9STRA9.410e-1246.97Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3WAK3_GLOUD1.040e-1162.50Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9ZKV8_9STRA7.320e-1066.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067C913_SAPPC7.690e-1058.97Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4BKS1_PYTIN1.000e-960.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A3NMB4_9STRA1.010e-941.43Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:254751..256533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size210
Model size210
Exons2
Ec32 orthologEc-08_000750.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E7JH@1,2SE52@2759
Seed eggNOG ortholog2880.D7FRF4
Seed ortholog evalue1.1e-35
Seed ortholog score155.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936208.2112362-CDS-E-siliculosus-1a_M_contig80:254750..2548921622936208.2112362-CDS-E-siliculosus-1a_M_contig80:254750..254892Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 254751..254892 +
1696250978.3546758-CDS-E-siliculosus-1a_M_contig80:254750..2548921696250978.3546758-CDS-E-siliculosus-1a_M_contig80:254750..254892Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 254751..254892 +
1622936208.253046-CDS-E-siliculosus-1a_M_contig80:256465..2565331622936208.253046-CDS-E-siliculosus-1a_M_contig80:256465..256533Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 256466..256533 +
1696250978.3718596-CDS-E-siliculosus-1a_M_contig80:256465..2565331696250978.3718596-CDS-E-siliculosus-1a_M_contig80:256465..256533Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 256466..256533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16241.1prot_E-siliculosus-1a_M_contig80.16241.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 254751..256533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16241.1

>prot_E-siliculosus-1a_M_contig80.16241.1 ID=prot_E-siliculosus-1a_M_contig80.16241.1|Name=mRNA_E-siliculosus-1a_M_contig80.16241.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=70bp
MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFATAPT
KDLYAPGTFKFEAQGEDDE*
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mRNA from alignment at E-siliculosus-1a_M_contig80:254751..256533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16241.1 ID=mRNA_E-siliculosus-1a_M_contig80.16241.1|Name=mRNA_E-siliculosus-1a_M_contig80.16241.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1783bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:254751..256533+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCTTTGGTGGACAGGACGCGTGGCGAAAGCACCCGATGCTGACGGG
CTGCTACAAGCGACCCTTCCCCGGCCTTGGTATTGCATTGGGCCTCTTTG
CGGGCTACTGCGTACTGGATGGGACGATCAAGTTTGCAACAGGTGAGTTT
GCTTTCGGTCGTCGTCAACACTGCAACACACAACTCGCGATGCTTCAGCG
CCGCAGCAGTTTCCTTTGGTGTGGTGAAGAGGGAGAGAGTAAAGGCGTGT
GCATCAATCAAAACCCGGTGGGTTACAGCTTGGTGTGCTGGACGGTGTGC
ATTAGCAAGCAGCAGCAACGTGTGTCACAGAGCAACACCGCAAATTCACG
CCGCATTCTGCACTCAAAAGCAACGTGTTTTTTCAGAGGGCAGAGGCCCG
AGTTTTGCGAGACAGATCATCCACTCACCCTCGCAAGCCGGAGGGTTCGC
AGACTCTCTTCCATTATCCATGCTCTATGCTCTGGGTAGTGGTATCTGAA
GTACTAAATTTATACTACCTGTAAATGGGAAGACCACACAACACAAACAA
TTTTGTATGTATGCATACGACGACGAGTCCGCAGGGCATGTCTGGCCGTG
CTCTGAAGCACTGGAAGTAGATCAACAGCCTGCTGGGCACACTCCCTGCT
GGTGACTGCAGCAGCCCCGGCCCTGGCCCTGTACAGCATCAGCCATATAG
TAACGCAACCGTTCCAGATTCCCCCCGTTTTGTGACGTCTTGGCGTGAAC
ATGCGAACCCCCTTTGAGACTTGCGCTCATCGCGTCTATCGTGCATCCCT
GTGCACGTCGGAACAGCTCGTCGAAAGCCGCATTCATTACGTAGCGTGCT
AACCACCTTCTCAAGCTGTGAACACCGTGTGAACGTGCACCCAGCAAGAG
CCGCAGCTCGACATGCTTCAACTATCGGTTATGTGTGCGAGATTGCCATC
AATGGATTGCACACAATGGATTCTGTGTTTCCTCGCGGACTGGCTGTCAC
ATGACTCGGCCGCAGACAACCTCTGTTCCATCATGTACCTCAGGGCGCGT
CCCCAGCCAGTGGTCGGCCATCCTCAACAGCCCTCGACTGTTTGTGTTGC
AATGTCACGATGCACTCATGCAGACGAAGAACAAGCGCCCGAGATCGTTT
CTTGCTTTCTGGAGAAATTGGGGTGGGGTCCCCAAAAAACGGGTTTTTTG
TCAGTTCCCCGGTCGATGGGGGAGGAGAGTCCTGTTCACTCCGAAAGAAA
CCGAGTCGTGGCACAGCAGCACCGTAAGACTTGCCGTTTTTGTCGTCCGT
TTTGATTCACACACGGGCTGGTTACACAAGTTTTGGTCCCGTCCGCTAGG
GGGTGAAGGGTGATCGCGTTGCCAATGGACTGGCTGATTGACAACGAGAC
GCGTTCGTTCGGAATGGAGGCACAGCAGTGTGTCGACCGCGTGCTGGAGG
ACTCATCATGGCCAACGTCTGTCAGCCTACTTTCGTTTTGCCAGCCGCAC
CGCGCCCGCCTGAGAACCCTTGTATACACTACGAGTTGCCACCACCCTGT
CGCGGGCCCCCCTCGTGACGATGAATTCTCGAGGACTACTCGAGCCGATG
TGGCTGGTTCGTTCATTCGAAATGTTTCGCAAAGCCACGCTCTGATTGCC
CGCGCCCCTTTGTACACCGCCAACCTCTGCACTGACACTCATGTGAACCC
CCCATGTCGTCGCAGCTCCCACGAAAGATTTATACGCCCCGGGAACGTTC
AAGTTCGAGGCTCAGGGCGAAGACGACGAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:254751..256533+

>mRNA_E-siliculosus-1a_M_contig80.16241.1 ID=mRNA_E-siliculosus-1a_M_contig80.16241.1|Name=mRNA_E-siliculosus-1a_M_contig80.16241.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=420bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:254751..256533+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCTTTGGTGGACAGGACGCGTGGCGAAAGCACCCGATGCTGACGGG
CTGCTACAAGCGACCCTTCCCCGGCCTTGGTATTGCATTGGGCCTCTTTG
CGGGCTACTGCGTACTGGATGGGACGATCAAGTTTGCAACAGATGGTCTT
TGGTGGACAGGACGCGTGGCGAAAGCACCCGATGCTGACGGGCTGCTACA
AGCGACCCTTCCCCGGCCTTGGTATTGCATTGGGCCTCTTTGCGGGCTAC
TGCGTACTGGATGGGACGATCAAGTTTGCAACAGCTCCCACGAAAGATTT
ATACGCCCCGGGAACGTTCAAGTTCGAGGCTCAGGGCGAAGACGACGAAT
AGCTCCCACGAAAGATTTATACGCCCCGGGAACGTTCAAGTTCGAGGCTC
AGGGCGAAGACGACGAATAG
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