mRNA_E-siliculosus-1a_M_contig80.16240.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16240.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16240.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:248406..248773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size333
Model size368
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936203.1224804-CDS-E-siliculosus-1a_M_contig80:248405..2487381622936203.1224804-CDS-E-siliculosus-1a_M_contig80:248405..248738Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 248406..248738 +
1696250976.1109314-CDS-E-siliculosus-1a_M_contig80:248405..2487381696250976.1109314-CDS-E-siliculosus-1a_M_contig80:248405..248738Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 248406..248738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936203.1336133-UTR-E-siliculosus-1a_M_contig80:248738..2487731622936203.1336133-UTR-E-siliculosus-1a_M_contig80:248738..248773Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 248739..248773 +
1696250976.1220186-UTR-E-siliculosus-1a_M_contig80:248738..2487731696250976.1220186-UTR-E-siliculosus-1a_M_contig80:248738..248773Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 248739..248773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16240.1prot_E-siliculosus-1a_M_contig80.16240.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 248406..248738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16240.1

>prot_E-siliculosus-1a_M_contig80.16240.1 ID=prot_E-siliculosus-1a_M_contig80.16240.1|Name=mRNA_E-siliculosus-1a_M_contig80.16240.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=111bp
MIGLRREGSSEARREHGTAATAETTRWCTGWWAVLRGIFVVVVGIIVLAT
KASTRPERCLTSKTSATNTAVCCCDEPSTNLATSDVGDERGKFFLTLTAR
LFSPRHLPAT*
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mRNA from alignment at E-siliculosus-1a_M_contig80:248406..248773+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16240.1 ID=mRNA_E-siliculosus-1a_M_contig80.16240.1|Name=mRNA_E-siliculosus-1a_M_contig80.16240.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=368bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:248406..248773+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATCGGTCTTAGGCGGGAGGGTTCGAGCGAAGCAAGACGCGAGCACGG
CACCGCGGCAACAGCAGAAACAACGCGATGGTGTACTGGATGGTGGGCCG
TTCTTCGTGGTATTTTCGTCGTGGTGGTCGGTATTATCGTCTTGGCTACA
AAGGCAAGCACTAGACCGGAACGATGTTTGACGTCTAAGACATCAGCAAC
AAATACTGCTGTCTGCTGTTGCGATGAACCATCCACAAACTTGGCTACTT
CCGACGTCGGTGACGAAAGAGGCAAGTTCTTCCTAACGCTCACTGCACGA
CTTTTCTCACCTCGTCATCTGCCGGCGACTTGAGCGCTTGTGGACACCGC
GCGTCGACCTGCTCCATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:248406..248773+

>mRNA_E-siliculosus-1a_M_contig80.16240.1 ID=mRNA_E-siliculosus-1a_M_contig80.16240.1|Name=mRNA_E-siliculosus-1a_M_contig80.16240.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:248406..248773+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATCGGTCTTAGGCGGGAGGGTTCGAGCGAAGCAAGACGCGAGCACGG
CACCGCGGCAACAGCAGAAACAACGCGATGGTGTACTGGATGGTGGGCCG
TTCTTCGTGGTATTTTCGTCGTGGTGGTCGGTATTATCGTCTTGGCTACA
AAGGCAAGCACTAGACCGGAACGATGTTTGACGTCTAAGACATCAGCAAC
AAATACTGCTGTCTGCTGTTGCGATGAACCATCCACAAACTTGGCTACTT
CCGACGTCGGTGACGAAAGAGGCAAGTTCTTCCTAACGCTCACTGCACGA
CTTTTCTCACCTCGTCATCTGCCGGCGACTTGAATGATCGGTCTTAGGCG
GGAGGGTTCGAGCGAAGCAAGACGCGAGCACGGCACCGCGGCAACAGCAG
AAACAACGCGATGGTGTACTGGATGGTGGGCCGTTCTTCGTGGTATTTTC
GTCGTGGTGGTCGGTATTATCGTCTTGGCTACAAAGGCAAGCACTAGACC
GGAACGATGTTTGACGTCTAAGACATCAGCAACAAATACTGCTGTCTGCT
GTTGCGATGAACCATCCACAAACTTGGCTACTTCCGACGTCGGTGACGAA
AGAGGCAAGTTCTTCCTAACGCTCACTGCACGACTTTTCTCACCTCGTCA
TCTGCCGGCGACTTGA
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