mRNA_E-siliculosus-1a_M_contig80.16239.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16239.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16239.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: D7FRF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF5_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 2.700e-141
Identity = 259/262 (98.85%), Postives = 260/262 (99.24%), Query Frame = 1 
Query:    1 MSSGDSNGLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQALKSPADDEVELNVDMLDPLTFRFVERLLRQSLQGNGSATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNSDGETRPKKQRA 786
            MSSGDSNGLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFS+VKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQALKSPADDEVELNVDMLDPLTFRFVERLLRQSLQGN SATS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNSDGETRPKKQRA
Sbjct:    1 MSSGDSNGLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSRVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQALKSPADDEVELNVDMLDPLTFRFVERLLRQSLQGNASATSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNSDGETRPKKQRA 262
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A8J2WSU6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSU6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 8.910e-49
Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 1 
Query:   22 GLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTFRFVERLLRQSL 594
            G+  ++KI+N+   +P+++ FREPV+ + +G+ DYPQ++  PMDL TV+  +E   Y+   D A D+RLIW+NC  YN  GS+F  LA G +K+FEERFSKVK           A  E   T AP L+EK RF++++YR  + ++G ++E++DA+CP A+ KS +DDE+E+N+D +DP TF  ++R +RQ L
Sbjct:    6 GMAAMTKIINTLMQRPDSVPFREPVDWRGLGLYDYPQVIAKPMDLTTVKQTIERQGYKSVNDCADDIRLIWNNCKKYNQDGSDFYNLADGFSKRFEERFSKVKAEN-------PALDEEELTHAPDLEEKTRFSHNIYRIKQEELGVLVEKLDAKCPDAIDKSTSDDEIEINIDQIDPRTFHDLDRYVRQCL 190
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: B8BSQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSQ7_THAPS)

HSP 1 Score: 160 bits (404), Expect = 7.610e-44
Identity = 90/200 (45.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:   16 SNGLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTFRFVERLLRQSLQGNGSA 612
            SN  Q +SK+V+ F+ K +   FREPV+ KA+G+ DYP +VK PMDLG V+ KL E +Y+   D A DVRLIW NC+ YN+ GS+F LLA  +AKKFEE+F+K+     E       K+   + + PT ++K  F   LY+ TK ++G V+  +DA+CP+AL K+ A+DEVE+NVD++ P  F  +   +R     NG A
Sbjct:    2 SNPEQAMSKLVSQFYAKADAEPFREPVDYKALGLVDYPLVVKKPMDLGQVKKKLNESKYKSIHDAADDVRLIWKNCMTYNADGSDFYLLAQTMAKKFEEKFAKLVEQFGEAAGDGGDKNGEDDYEDPTPEDKRTFAKLLYKITKEELGNVITDLDAKCPKALVKNSAEDEVEINVDVISPKIFDELLSYVRGCSGDNGGA 201
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A7S3JU45_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU45_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.900e-43
Identity = 75/194 (38.66%), Postives = 131/194 (67.53%), Query Frame = 1 
Query:   25 LQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTFRFVERLLRQSLQGN 603
            ++ + KIV+    + + + F EPV+ + +G+ DYP+++K PMDLGTV+ K+EE  Y      A D+RL+WSNC  YN  GS+F  LA  L+K+FE++F+KVK  +      P  + +  +  AP+L+EK +F++ +Y+  + ++GQ++E+++ RCP+A+ K+P DDE+E+N+D +DP TFR +++ ++  +  N
Sbjct:    1 MEAMKKIVDKLMKRQDAVPFLEPVDWQGLGLVDYPKMIKKPMDLGTVKKKIEENEYASVHACAEDIRLVWSNCKKYNQDGSDFFNLAESLSKRFEDQFAKVKAED------PMIEDDTEH--APSLEEKTKFSHMIYKIKQEELGQLVEKLEDRCPEAIDKTPNDDELEINIDAIDPKTFRELDKFVKACIVNN 186
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A7S2PE54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PE54_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.200e-43
Identity = 91/217 (41.94%), Postives = 134/217 (61.75%), Query Frame = 1 
Query:   25 LQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVK------------TAEKERDRKPSAKSEPVNT--------KAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQALK----SPADDEVELNVDMLDPLTFRFVERLLRQSLQGN 603
            L+++SK+V+S   K +T  FREPVN + + + DYP+I+K PMDLGTV+ KLE  +YE A + A D+RLIWSNC+ YN  GS+F LLA  L++KFE+RF KV+            T  K   +  SA++   +         K PTL+EK +F  ++++     +G VM+ +D RCPQA++      A+DE+E+NVD LDP TF  ++R ++  L  N
Sbjct:   14 LRKMSKLVSSMMTKSDTAPFREPVNWRELELWDYPKIIKRPMDLGTVKRKLESTQYETANECAEDIRLIWSNCMTYNQEGSDFYLLAQALSRKFEDRFRKVRAEYDVGGDAYDNTKSKSDGKGGSAENGSGSAAGGKMGDHKPPTLEEKTQFAGNIFKIGGDALGYVMQVIDLRCPQAIERGNNGAAEDELEINVDTLDPRTFAELDRFIQDKLLVN 230
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A7S2MY29_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MY29_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.340e-42
Identity = 79/177 (44.63%), Postives = 120/177 (67.80%), Query Frame = 1 
Query:   34 VSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTF 561
            +SK+V   + K +   FR+PV+ K +G+ DYPQI+K PMDLG V+ K+E G+Y    D A DVRLIW NC+ YN+ GS+F +LA  +++KFE++F+K+      +D+  + +S+  N   PTL+EK  F   LY+ +KV++G V+ ++D +CP AL K+ A+DEVE+NVD + P  F
Sbjct:    9 MSKLVAQIYAKGDAEPFRDPVDWKLLGLFDYPQIIKKPMDLGQVKRKIESGKYGTIHDAAEDVRLIWKNCMQYNADGSDFYILAKNMSRKFEDKFTKLL-----KDQGSAGESKTKNATEPTLEEKRSFARSLYKISKVELGIVITELDKKCPAALTKNSAEDEVEINVDHISPAVF 180
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A7R9VVT0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVT0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.000e-41
Identity = 82/177 (46.33%), Postives = 122/177 (68.93%), Query Frame = 1 
Query:   34 VSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTF 561
            ++K+V   + K +   FREPV+ K++G+ DYPQI+K PMDLG V+ K+E G+Y    D A DVRLIW NC+ YN+ GS+F +LA  ++KKFE++F+K+   +K+ D K SA +   N+  PTL+EK  F   LY+ +K ++G+V+  +DA+C  AL K+ A+DEVE+NVD + P  F
Sbjct:   11 MAKLVAQIYAKSDAEPFREPVDWKSLGLFDYPQIIKKPMDLGQVKRKIETGKYGAIHDAAEDVRLIWKNCMQYNADGSDFFILAQNMSKKFEDKFAKL---QKDLDSK-SAANGKGNSSEPTLEEKRTFAKLLYKISKEELGKVIVDLDAKCSTALTKNSAEDEVEINVDHISPTVF 183
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A7S2UZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN8_9STRA)

HSP 1 Score: 152 bits (385), Expect = 9.280e-41
Identity = 80/188 (42.55%), Postives = 114/188 (60.64%), Query Frame = 1 
Query:   22 GLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQALKSPADDEVELNVDMLDPLTFRFVERLLR 585
            GL Q+ KIV+    + + + FREPV+ + + I DYPQIVK PMDLGT++ KLE G Y    + A D+RL+W NC++YN  GS++  LA  L+KKFE++++KV   E          S   + K PTL+EK+ F   +YR      G+V+  +D RCP  L     DE+E+ VD++DP TF  V R L+
Sbjct:   40 GLTQMKKIVSYLMTRQDAVPFREPVDWRQLQIFDYPQIVKRPMDLGTIKKKLENGEYRTPAECAADIRLVWENCMIYNQDGSDYYRLAEKLSKKFEDKYAKVSNKE--------VSSAIDDDKVPTLEEKLLFEQMIYRLRAEQTGEVVLTLDQRCPDCLAKVDGDELEITVDVIDPRTFHDVFRTLQ 219
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A7R9UFP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFP7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.680e-40
Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 1 
Query:   25 LQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTFRFVERLLRQSLQ---GNGSAT 615
            ++ +  +++    + E+  F EPVN + MG+ DYP+I+KNPMDLGTVR KL    Y  A + A D+RL+W NC+ YN  GSEF  +A   +KKFE +F+ V  +E        AK        PT DE++ F+++L+     ++G V++++D  CP  L K P D E+ELNVD +DP +FR V+R +++ L    G G  T
Sbjct:    8 IKSMMGVLDFLDKQTESYIFSEPVNWREMGLYDYPEIIKNPMDLGTVRQKLVNKEYRNATECAEDIRLVWRNCMTYNQDGSEFYKIAEKFSKKFESKFAPVAKSE--------AKESEEEDAPPTTDERIVFSHNLFNLRMQELGNVIQKLDQMCPDCLEKKPDDGEIELNVDAIDPASFREVDRYVKECLPDPAGKGPGT 200
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Match: A0A7S2WIF9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WIF9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.850e-40
Identity = 79/180 (43.89%), Postives = 118/180 (65.56%), Query Frame = 1 
Query:   34 VSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPMDLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKVDVGQVMEQVDARCPQAL-KSPADDEVELNVDMLDPLTFRFV 570
            +SK++  F+ K +   FRE V+ K +G+ DYPQI+K PMDLG V+  +E  +Y+   + A DVRLIW NC+ YN+ GS+F +LA  ++KKFE++FSK+       D    AKS    ++ PTL+EK  F   LY+ +K ++G+V+  +D++CP AL K+ A+DEVE+NVD + P  F  V
Sbjct:   11 LSKLLGHFYAKADAEPFREAVDWKGLGLFDYPQIIKKPMDLGQVKRNIETSKYKTIHEAAEDVRLIWKNCMTYNADGSDFYILAQNMSKKFEDKFSKLLKDVNVSDTDGKAKS----SEEPTLEEKRGFAKGLYKISKEELGRVITDLDSKCPAALTKNSAEDEVEINVDQITPAVFHEV 186
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRF5_ECTSI2.700e-14198.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2WSU6_9STRA8.910e-4944.27Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
B8BSQ7_THAPS7.610e-4445.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3JU45_9STRA2.900e-4338.66Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S2PE54_9STRA4.200e-4341.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2MY29_9STRA3.340e-4244.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9VVT0_9STRA2.000e-4146.33Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2UZN8_9STRA9.280e-4142.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UFP7_9STRA1.680e-4039.80Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WIF9_9STRA5.850e-4043.89Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:247707..254522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size789
Model size1097
Exons5
Ec32 orthologEc-08_000760.1
Ec32 ortholog descriptionBromodomain and extraterminal protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.BK
EggNOG OGsCOG5076@1,KOG1474@2759
EggNOG free text desc.acetylation-dependent protein binding
KEGG koko:K11724
Seed eggNOG ortholog2880.D7FRF5
Seed ortholog evalue2.2e-113
Seed ortholog score415.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16239.1prot_E-siliculosus-1a_M_contig80.16239.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 248015..254522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936208.0858922-UTR-E-siliculosus-1a_M_contig80:247706..2480141622936208.0858922-UTR-E-siliculosus-1a_M_contig80:247706..248014Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 247707..248014 -
1696250978.2778916-UTR-E-siliculosus-1a_M_contig80:247706..2480141696250978.2778916-UTR-E-siliculosus-1a_M_contig80:247706..248014Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 247707..248014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936208.0993073-CDS-E-siliculosus-1a_M_contig80:248014..2482811622936208.0993073-CDS-E-siliculosus-1a_M_contig80:248014..248281Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 248015..248281 -
1696250978.2909033-CDS-E-siliculosus-1a_M_contig80:248014..2482811696250978.2909033-CDS-E-siliculosus-1a_M_contig80:248014..248281Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 248015..248281 -
1622936208.1124775-CDS-E-siliculosus-1a_M_contig80:248715..2487841622936208.1124775-CDS-E-siliculosus-1a_M_contig80:248715..248784Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 248716..248784 -
1696250978.3039591-CDS-E-siliculosus-1a_M_contig80:248715..2487841696250978.3039591-CDS-E-siliculosus-1a_M_contig80:248715..248784Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 248716..248784 -
1622936208.129564-CDS-E-siliculosus-1a_M_contig80:249321..2494441622936208.129564-CDS-E-siliculosus-1a_M_contig80:249321..249444Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 249322..249444 -
1696250978.3152916-CDS-E-siliculosus-1a_M_contig80:249321..2494441696250978.3152916-CDS-E-siliculosus-1a_M_contig80:249321..249444Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 249322..249444 -
1622936208.1428518-CDS-E-siliculosus-1a_M_contig80:250460..2506281622936208.1428518-CDS-E-siliculosus-1a_M_contig80:250460..250628Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 250461..250628 -
1696250978.3266764-CDS-E-siliculosus-1a_M_contig80:250460..2506281696250978.3266764-CDS-E-siliculosus-1a_M_contig80:250460..250628Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 250461..250628 -
1622936208.1591465-CDS-E-siliculosus-1a_M_contig80:254360..2545221622936208.1591465-CDS-E-siliculosus-1a_M_contig80:254360..254522Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 254361..254522 -
1696250978.3367522-CDS-E-siliculosus-1a_M_contig80:254360..2545221696250978.3367522-CDS-E-siliculosus-1a_M_contig80:254360..254522Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 254361..254522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16239.1

>prot_E-siliculosus-1a_M_contig80.16239.1 ID=prot_E-siliculosus-1a_M_contig80.16239.1|Name=mRNA_E-siliculosus-1a_M_contig80.16239.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=263bp
MSSGDSNGLQQVSKIVNSFFNKPETLAFREPVNPKAMGIPDYPQIVKNPM
DLGTVRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAK
KFEERFSKVKTAEKERDRKPSAKSEPVNTKAPTLDEKVRFTYDLYRTTKV
DVGQVMEQVDARCPQALKSPADDEVELNVDMLDPLTFRFVERLLRQSLQG
NGSATSNNSAGTTAASASSTSSSTSKSKSGGGGGGGGSSGGSSGPKKRKN
SDGETRPKKQRA*
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mRNA from alignment at E-siliculosus-1a_M_contig80:247707..254522-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16239.1 ID=mRNA_E-siliculosus-1a_M_contig80.16239.1|Name=mRNA_E-siliculosus-1a_M_contig80.16239.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6816bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:247707..254522- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTTCGGGCGACAGCAATGGGTTGCAGCAGGTGTCGAAAATCGTCAA
CTCGTTCTTCAACAAGCCGGAGACACTTGCCTTTCGAGAGCCGGTCAACC
CAAAAGCGATGGGCATCCCCGACTACCCCCAGATCGTGAAGAATCCCATG
GACCTTGGCACGGTGAGCTAATTTGAAACTATCATCAAGAGCTATGTTAG
CTAGAGACAGAGGTTACTTTGTTGCGAGACTACGTACGAATTGCTTCCTG
CCGCAGTTGATAGATAGAAGTACGAAATATAACCCACGAAGTTTTGGTCT
GTGCTTGACATTGATCCCGCCGATTTCAAAATCTGATCCAATCTCCAACA
AGTTATTTGCTACTATAATACTGTATTTGCCTCCAGTCCTCCAGAGCATA
TTGTAACAGCTTGCTGTAGGAGCGTCGTTTGTCAAGACTGCTGTTAGCAA
GGAACCAGATCTTTCAGGACTCCGGGCCGGTCTTGCTTTCCCTGATTCTT
GAATCCTGTGTGGGTCCTCCTCATCATGTGTGATATCTCGGCACTGATGC
CTTTCCAGTCTGAATATTGTACCTACCCAAGTTGCCTTCGTACTGACCAG
ACTTGAAAGTGATCATGAACTTTTCTGATGGAATGTCTAAGATGAAGTCT
GGTCAGTACTCATGTAACTATGGGTATATGTAGGTTTCAGACTGGAAAGG
CATTCAGGTGCCGAGATATCAGACATGATGAGGAGGATCTACTTCGAGGG
CTCACCGAGCCCGCCCCCTTCCATCGGGTCGGGGGCAATTCAAGTCTAGC
TGATTCGTCCTCGTGGGCATATTCTACCAATCCTTTGATTTGCATCCGTT
TCAGCTCCCCCCTTGTCTTGCCGTCGAGTCCTGCAGCAGTCTCGACACCT
GGGGTGCTGAGCGCTGGTCCTTGGGACCTACGCGTCCTGTTCAACGAGAT
GACGGTCTGTCGTTGAACACTTGCAGGGGTATCTAGAACCCTGGTCCTTT
TCCTCTTCGTTGATTTCCTGGAGCGTGGCTCCTGAGACGCCTGGTGCGTC
TTCTGACTCAAAATTCCTTGTAGAGGTCTCGACCTTGATCCTGGCTCCCT
GAGATCTTGTACTCGAGCACTTGACTCGTGCGACCGTAGCTCCAGCGACC
TCTCGGGAACGGAGGTGTGTGGTGTGAGGCTTGAAGCTGACGAACACCGC
GTACCTAGGTGACCCTTGGCACGGGCTTGTCAAGTGTGTGGAAAGAGAAA
CATTCAAATCTCTGTCTGCAGCTCGTGCGTACGACAACAGATAGCCCGAG
GCGAGTGGCGTCCGATGTACGTAAGCGAAGCACCTGATGCGATCGTACAA
TCGGTCACAAGCGTATCCGCACGTGGTGCGTTGCGACTCGGCTTACACTG
CTCGTGGCAATCAACCTCCGTGAGAGAGTTGTGCGGGGAGGCTCTTTACG
AAGACGAAGAGTTCCCAGGTGGAAAAAGCATGTTGAAAAAAAGTAGTTTT
TTAGTCGGAAAGACCGGAAGAATAACAGAGTGAGAGGATGGGGGCTGCGC
GGGGGCTGCACCATCCAAGCAAAGCTTACCGACGGAAACGCACTTGAACT
TATATCCCAAAGTGTCAACCAATTAGAAAACATGACCCCTTGGGCAAATA
TCCGACTGACTTCGTCTCGTGCGTATACAAAATGCACTCAACATAACGTT
GACCAATCATATGCAAGCATCAACTAGTCGCCAGCAACAAGTAATTCTAG
CGACGTACTTACGTGCGTAATACGACTCAGCAAGCTGTGATACTCAGAAT
GACAGCTGCTGAACATTCGTATGTCAAGAACAACGTCAATGTTCACCAGA
AGGAAACTTCTCATAGAAAATGATAAAAAACTAATACGGATAACCGAATA
GACTTATCCTATCAAATGCGCTCTTCTTGTCCAGCAGTATTTCCAATACA
GGATGCACGCCTGCACTACTGCGTGTCTTGATACGAAGGTGAGAGCGACA
TTGTACGTATCGCTGTTTACCTATGCTGTAGCATGTACGATGCGATGTAA
AATCCAGCATCGTTTTTGCCGGGAGCTCTGTTGTTAAGTCCTCTCTGTGG
TTGGCCAACAGCAAAACATAGGTTTTGGTGCGCGATTCTTAACTGAGCGC
CTCTTCTTGTGGTCAAGTGTACCCTTTCAAGACGAAGACAAACAGCATAG
AGTACCTCCATTTGGCGCTGAATCCTGGGGCGAAGAGACCAGGCACAGGG
CATGCCACTGCGTGAAATTTCACCAATAGACCGGATCTTCCCAATTCGAG
AGGTTGAGGCAGAGCAGAGGAGCGCAGCCCACACAATCACGCGTAAAGCT
TGCCGCCTGCCTGCCGCCTGCGCCAGCCGGCGCGCTCCGAGCGGGGTGTA
TAGTTTAGTTTGCCTTGCCGTACATGCCTTCGTCAGACGAGGCTCCAGGC
CTTAGACGGTATTCTGAAGCAGGAACGAGCACGGAATGTAGATGGCTCTC
TCTGAGAAATATCGCTGAGAAAGAACCTCGAAAAGTCGCCAAGTTGCCTG
CCAACAAGCATACGAAAAAGGAAGACGCACACACCACGTCCTGAAAACGT
ATATCAATGTAACCGCTATTCCCACGGTTGGGTAACTGCCAGAGGTTGGC
CCTATAGCTTGCAGCCACCCTCAGACCGTTGATACGTGGTAGGCAACAGC
GCATGGATCCACGGCCAGGCTTGGTTTGGTTTCTGTTTCAACACACAAGA
AGAGAAATGTTTGCGTGCACACAGAAAAAAGCACCAGCAGGTGTGAAAAG
GTGATGACACGCCAAGCAACCAACCTCTGACCTCTCAGGTCACGGATGAA
GATAGCACCTTCGGGGCTTCCACCTCTCGTAGTGTTTTCCGTCGGTGGCC
TTGTAGTTTGGTTGTCTGTTCAACTTATCGCTACGTTTGCCTCTGCATCT
ACAACTTCAGGGCAGGGAGAGAGTGGGATGAGAGACCATGTAGGTTCTGA
ACAACGGTATTTCGCAATAGTGATTGAACAAAATTGTTTTTTCGTTCTTG
CCGTCGCGCTCTCGGATTTGTCCGTGAAAAACCTTGTTTTGATTCACGAA
GTCTCGCGATATGTCTAACTTGAGTGAGAGTAAGCTCACCCAGGCGAAGT
TCAATAAGTAAGGGTGGCAGTCTTCAAGGTCCTACCATCATGTGTATTCT
ATGAGGCTATAAGCACACTCCGTTTTCTGTCACTCAAGAAAATTACCTCT
ACAACTCCCCCGGGGAAAGGGGTCAATGTATCCTACGATTTTGGGGACAA
ATTCCTGTCAAGCACGGCCACCTGTTGTCGGAGCGCGACCAAACCCGTGT
GAAGAAGAGTGCCCTAATCAACTTCCTCCTCACAGACCAGCAGATCGTAA
ATCGGTGCTCTATAGACCTCGTTTCTGGTCGAACACAAGGCGATTATTTT
TTGACGTGCCGTAGTTAGGCCGAAGTTGCAGAAGGCCCCCTCCATCGCCT
TGGTTGGAAGAGCCCGATATTTAGAGGCTTTCTTCCGTCCTGGGGATGAA
AGGAAAAAATGTCGTGCTTCGCGCTCCGAGGCTCATTAAAATTTCTGGAT
ACATATCGGCACTATTCAGGGCCCGCTACTGTACAGAAAATTCATGATCA
ATGGTTGAGTCGAACAGCATAATATGGAGGTGAGGTGACGGATACGAAAC
CTTAACGTGAACCTTCCCAAGATTTGTCTCGTCATGCTGTACATGGCGAT
TGCCGATCTGCGGTTTCGTTGATGCGATGGCAACTTTCTGCGTAATAAGA
GCACGACAGAGCTCACTTTACCGCCACACGTTCCGGTTGCATTCCGCCCT
CGTCAACGGTATATGGGCGTACTCGCGAACATGGTTCGGGTTAGGTGAGG
ACAAAGCTGGAAGAGGGCCGGTACGAGCGCGCGGAAGACGTGGCACGAGA
CGTTCGCTTGATCTGGTCTAACTGCATCCTCTACAACTCGCCGGGATCTG
AGTTTGGCCTCCTCGCGGCGGGCCTCGCGAAAAAGTTCGAGGAGAGATTT
TCCAAGGTCAAGGTATGGTTCGCTGTGAGGTTCCTCCAAGGTTACGGTAA
TACTGCGCTGGTAGGTTCCTGTTCTTCTAGGAAATGTGACTACAACAACA
GATACTCTTAACCGTTCGATATCTAGCATGGATGGCAGGCAGGGGAATAG
TCAACATGAATCCAAGGTCTCTCCGCCGAACTCCCGAGAACACAAACAAA
TAATCGTAATTCGTCCTGTGTGGTGCGTTGTTTTTCAGCGGCATTCGTTC
ATCCATCTGGCGCTAAAGATTTCCCCCTCCTTCCATTCAGAGACACTGCA
GTAGGGCGTTTGTTGTACGCACAGCAGCGGTGCAAGCACGTCTACCGCAC
GTGTAGAAACGACCGGTCACATCCCCCCCAATGTCTGTCGAGGGCGATTC
CTGCATGCGTTCACGCGTACCGTGTCCTTCTCTATATTTTGGCGGAGCTT
ATCGCCGGATACTGTACTGCTGTACCAACTACGTCCCTCGAAAAATTCTT
GACGTGTTGAGCGTGTTGGAATATTCAATGGTAGCCAGTAAGTAAATGAA
GGACCTAAGGAACATTGCCGGAATAGTTTCAGTACTTGAATCTTTGATTG
GAGTGTGGTACGTTTGACCGTTGTCCTATGGGAAGATCCTCTTTCCGTTG
TGTTCTCTTTTCGATTGTGTTCTACTTCCGTTTGGGTTCCTAGTTGGTGA
TGAGGATGGATGGCTCGGCCCCGTGGCGCTCGCCCAATCTCTCTCATCCC
CGTTCTATTCCTTTCCTTTCGGCCAACTAAGCGCCAAATCAACCGTCTTA
TCTGGTCTAGACACACGTGAGCCTCTGCACACTGTTCTTACACAGCAGGG
GCCATTGCCAGGAATACACCCAATCCAGGGTTTACATTCCAACAGAGTGC
ATTCCCCTCAAACTGCCAGTTACATAGCTTCCTCGAGCAAGGGTAGTAGT
TTGCGTGGTCCTAAATTACTTTACTTTTTGAACAACCGACCCCCGCTTGA
ACTACCGCACACCGCCGAAACAAATCAGACCGCGGAGAAGGAGCGAGACA
GAAAACCCAGCGCCAAGTCGGAGCCGGTCAACACGAAAGCACCGACCTTG
GATGAGAAGGTCCGCTTCACGTACGACCTTTACCGGACAACCAAGGTCGA
CGTGAGTGAAGACACGAAACGACGGAGACCCAGGGACGGGAGAACCAGTG
TTATTTTCGTTGTTACTTTTAATCGGTGTTCACATCATTTCTGCCCGGTA
GGAGCTCCGACCCGTGGTCACACAGAAGAAGGGTTCCTCTCCCTGAGGCC
CCCTCCTGCGGTGCTTGACTTCGATTATCAACGCGAGAAAGAGTGCAACA
ACACTCTCTTCCTTCAAAGTGTGCACACGAACTAGCCTGGCGGTTTGTGC
CGCGTGCAGAGTACGTAAGTCAGGTGCCAGGGGAAGCACTTCTCCGGAGA
TTTGGTGGATGTTTTGCACGTCAGGGGCAAGGACTCGGGATGTAGATGTT
CAAAACACGTCGGCAGCAATTAGGAAAAGGCTAACCATTCAGTCTCTACC
TTAAGTGCTACTAGCTGGTCTTGTTGATACTATCAATTGCCTAGATCAGG
ACGGCGTGGCGCCGATGATATCTCCAGCTATGTAACAGCACGAAATGCTA
AACACACGCATGTCATCGCATGGCACCGCATCGCACAGGTAGGGCAGGTG
ATGGAGCAGGTCGACGCGCGGTGTCCACAAGCGCTCAAGTCGCCGGCAGA
TGACGAGGTGAGAAAAGTCGTGCAGTGAGCGTTAGGAAGAACTTGCCTCT
TTCGTCACCGACGTCGGAAGTAGCCAAGTTTGTGGATGGTTCATCGCAAC
AGCAGACAGCAGTATTTGTTGCTGATGTCTTAGACGTCAAACATCGTTCC
GGTCTAGTGCTTGCCTTTGTAGCCAAGACGATAATACCGACCACCACGAC
GAAAATACCACGAAGAACGGCCCACCATCCAGTACACCATCGCGTTGTTT
CTGCTGTTGCCGCGGTGCCGTGCTCGCGTCTTGCTTCGCTCGAACCCTCC
CGCCTAAGACCGATCATATCAACCGCTTTTCTGTCCCTCTCTGGCTCCGT
CTCTCTTCACTCTGTCGCTCAACACTCGTGGAACAACAACAACAACAACA
ACAACAACAACAACAACAACGACGACAACAACGACGTGAAGGTGGAGCTG
AACGTGGATATGTTGGACCCCCTGACGTTTCGGTTCGTGGAACGATTACT
ACGACAATCCCTGCAAGGAAACGGCTCTGCTACTTCCAACAACTCCGCGG
GAACGACAGCAGCGTCAGCCTCCAGCACGTCTTCCTCCACCAGCAAGTCC
AAGTCGGGAGGTGGTGGCGGTGGCGGCGGCAGCAGCGGCGGCAGCAGCGG
CCCAAAAAAGCGGAAAAACTCAGATGGGGAAACGCGACCAAAAAAGCAAC
GCGCTTAACTTCTGCGGAACAAAAATCGCTCCATGTGTTTTTGTCGTCAG
TAGGAGGTTTTTCGGGGGGCATGCTGCGTGGGGGATAACGAGATGCTCCA
CATCCCGCCTCCTTGGTAGAGCGTGGTGTCGATTTCGGTGATGAAAGGAA
GATTTACCCGTTGGCTATTGCTCGAGGGTGTGTATGAGATATTCTGGTGT
GCCGTCGGGTGGAGTGTGTGCGTTGGATTTGTAGAGGACTAGAAAACAAT
CGTTCAACAGTAATGCCAAGCGCACCCAACAACTGTGTCCGCACTATTAC
GAGCCCGATGTGAACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:247707..254522-

>mRNA_E-siliculosus-1a_M_contig80.16239.1 ID=mRNA_E-siliculosus-1a_M_contig80.16239.1|Name=mRNA_E-siliculosus-1a_M_contig80.16239.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1578bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:247707..254522- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTTCGGGCGACAGCAATGGGTTGCAGCAGGTGTCGAAAATCGTCAA
CTCGTTCTTCAACAAGCCGGAGACACTTGCCTTTCGAGAGCCGGTCAACC
CAAAAGCGATGGGCATCCCCGACTACCCCCAGATCGTGAAGAATCCCATG
GACCTTGGCACGATGTCTTCGGGCGACAGCAATGGGTTGCAGCAGGTGTC
GAAAATCGTCAACTCGTTCTTCAACAAGCCGGAGACACTTGCCTTTCGAG
AGCCGGTCAACCCAAAAGCGATGGGCATCCCCGACTACCCCCAGATCGTG
AAGAATCCCATGGACCTTGGCACGGTGAGGACAAAGCTGGAAGAGGGCCG
GTACGAGCGCGCGGAAGACGTGGCACGAGACGTTCGCTTGATCTGGTCTA
ACTGCATCCTCTACAACTCGCCGGGATCTGAGTTTGGCCTCCTCGCGGCG
GGCCTCGCGAAAAAGTTCGAGGAGAGATTTTCCAAGGTCAAGGTGAGGAC
AAAGCTGGAAGAGGGCCGGTACGAGCGCGCGGAAGACGTGGCACGAGACG
TTCGCTTGATCTGGTCTAACTGCATCCTCTACAACTCGCCGGGATCTGAG
TTTGGCCTCCTCGCGGCGGGCCTCGCGAAAAAGTTCGAGGAGAGATTTTC
CAAGGTCAAGACCGCGGAGAAGGAGCGAGACAGAAAACCCAGCGCCAAGT
CGGAGCCGGTCAACACGAAAGCACCGACCTTGGATGAGAAGGTCCGCTTC
ACGTACGACCTTTACCGGACAACCAAGGTCGACACCGCGGAGAAGGAGCG
AGACAGAAAACCCAGCGCCAAGTCGGAGCCGGTCAACACGAAAGCACCGA
CCTTGGATGAGAAGGTCCGCTTCACGTACGACCTTTACCGGACAACCAAG
GTCGACGTAGGGCAGGTGATGGAGCAGGTCGACGCGCGGTGTCCACAAGC
GCTCAAGTCGCCGGCAGATGACGAGGTAGGGCAGGTGATGGAGCAGGTCG
ACGCGCGGTGTCCACAAGCGCTCAAGTCGCCGGCAGATGACGAGGTGGAG
CTGAACGTGGATATGTTGGACCCCCTGACGTTTCGGTTCGTGGAACGATT
ACTACGACAATCCCTGCAAGGAAACGGCTCTGCTACTTCCAACAACTCCG
CGGGAACGACAGCAGCGTCAGCCTCCAGCACGTCTTCCTCCACCAGCAAG
TCCAAGTCGGGAGGTGGTGGCGGTGGCGGCGGCAGCAGCGGCGGCAGCAG
CGGCCCAAAAAAGCGGAAAAACTCAGATGGGGAAACGCGACCAAAAAAGC
AACGCGCTTAAGTGGAGCTGAACGTGGATATGTTGGACCCCCTGACGTTT
CGGTTCGTGGAACGATTACTACGACAATCCCTGCAAGGAAACGGCTCTGC
TACTTCCAACAACTCCGCGGGAACGACAGCAGCGTCAGCCTCCAGCACGT
CTTCCTCCACCAGCAAGTCCAAGTCGGGAGGTGGTGGCGGTGGCGGCGGC
AGCAGCGGCGGCAGCAGCGGCCCAAAAAAGCGGAAAAACTCAGATGGGGA
AACGCGACCAAAAAAGCAACGCGCTTAA
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