mRNA_E-siliculosus-1a_M_contig8.16198.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16198.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16198.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16198.1 vs. uniprot
Match: D7FNX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNX6_ECTSI)

HSP 1 Score: 452 bits (1163), Expect = 3.430e-156
Identity = 253/288 (87.85%), Postives = 255/288 (88.54%), Query Frame = 1 
Query:  103 MTEGVAMSEVDEVQDRVMEIAALLKNKAPHLAPSVIPRPYKHAAANIVTLCSTPRQRADAEAFLASKAESATADDVAAEGKKGRGEEGQQIESEDAAEGGRHHVVLETETDIATRTFRITAAKLGGRIDATLSDLNLLMDLLLNAPRQELEPYVERFAAANELDPSTAALALHGACSLAYALQVATSSIAGWNGFVGSHRLPLAGDVDMTVVMKELFRPPPTPPASPRSHSKSKTKGKKGXXXXXXXXXXXXXXXXXXXGESGAAGVEGGVSGKGKTAKKGSKRKKQG 966
            MTEGVAM EVDEVQDRVMEIAALLK KAPHLAPSVIPRPYKHAAANIVTLCSTPRQRADAEAFLASKAESAT DDVAA G++GRGEEGQQIESEDAAEGGRHHVVLETETDIATRTFRITAAKLGGRIDATLSDLNLLMDL LNAPRQELEPYVERFAAANELDPSTAALALHGACSLAYALQVATSSIAGWNGFVGSH LPLAGDVDMTVVM ELFRPPPTPPASPRS     TKGKKG                   GESGAAGVEG VS KGKTAKKGSKRKKQG
Sbjct:    1 MTEGVAMGEVDEVQDRVMEIAALLKKKAPHLAPSVIPRPYKHAAANIVTLCSTPRQRADAEAFLASKAESATVDDVAAAGERGRGEEGQQIESEDAAEGGRHHVVLETETDIATRTFRITAAKLGGRIDATLSDLNLLMDLHLNAPRQELEPYVERFAAANELDPSTAALALHGACSLAYALQVATSSIAGWNGFVGSHPLPLAGDVDMTVVMNELFRPPPTPPASPRSXXXXXTKGKKGGAKKKKAAAAG--------GESGAAGVEGVVSEKGKTAKKGSKRKKQG 280
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16198.1 vs. uniprot
Match: A0A7S2SU08_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU08_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.350e-5
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:  454 RITAAK--LGGRIDATLSDLNLLMDLLLNAPRQELEPYVERFAAANELDPSTAALALHGACSLAYALQVATSSIAGWNGFVGSHRLPLAGDVDMTVVMKEL 750
            R+T  K  L G + ATLS+L+ ++ L L+    ELEPYV  F   N  +    A  +  A ++AY+ QV   ++ GW   +G H++P+  +V +  V+ EL
Sbjct:   88 RVTVDKFLLVGEVQATLSNLDAMLQLQLHGSPAELEPYVTFFGDRNRSEEP--ARDMQEALNVAYSAQVVVDNMPGWATRIGEHKVPVPSNVPVRQVISEL 186
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNX6_ECTSI3.430e-15687.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SU08_9STRA1.350e-534.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1912551..1915720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size867
Model size1356
Exons4
Ec32 orthologEc-10_004730.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16198.1prot_E-siliculosus-1a_M_contig8.16198.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1912653..1915333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936198.4916358-UTR-E-siliculosus-1a_M_contig8:1912550..19126521622936198.4916358-UTR-E-siliculosus-1a_M_contig8:1912550..1912652Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1912551..1912652 +
1696250973.7142675-UTR-E-siliculosus-1a_M_contig8:1912550..19126521696250973.7142675-UTR-E-siliculosus-1a_M_contig8:1912550..1912652Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1912551..1912652 +
1622936198.5819364-UTR-E-siliculosus-1a_M_contig8:1915333..19157201622936198.5819364-UTR-E-siliculosus-1a_M_contig8:1915333..1915720Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1915334..1915720 +
1696250973.7652595-UTR-E-siliculosus-1a_M_contig8:1915333..19157201696250973.7652595-UTR-E-siliculosus-1a_M_contig8:1915333..1915720Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1915334..1915720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936198.5121539-CDS-E-siliculosus-1a_M_contig8:1912652..19130211622936198.5121539-CDS-E-siliculosus-1a_M_contig8:1912652..1913021Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1912653..1913021 +
1696250973.7259696-CDS-E-siliculosus-1a_M_contig8:1912652..19130211696250973.7259696-CDS-E-siliculosus-1a_M_contig8:1912652..1913021Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1912653..1913021 +
1622936198.5290673-CDS-E-siliculosus-1a_M_contig8:1914061..19141391622936198.5290673-CDS-E-siliculosus-1a_M_contig8:1914061..1914139Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1914062..1914139 +
1696250973.735705-CDS-E-siliculosus-1a_M_contig8:1914061..19141391696250973.735705-CDS-E-siliculosus-1a_M_contig8:1914061..1914139Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1914062..1914139 +
1622936198.5456302-CDS-E-siliculosus-1a_M_contig8:1914468..19145811622936198.5456302-CDS-E-siliculosus-1a_M_contig8:1914468..1914581Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1914469..1914581 +
1696250973.7455642-CDS-E-siliculosus-1a_M_contig8:1914468..19145811696250973.7455642-CDS-E-siliculosus-1a_M_contig8:1914468..1914581Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1914469..1914581 +
1622936198.5637805-CDS-E-siliculosus-1a_M_contig8:1915026..19153331622936198.5637805-CDS-E-siliculosus-1a_M_contig8:1915026..1915333Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1915027..1915333 +
1696250973.7551742-CDS-E-siliculosus-1a_M_contig8:1915026..19153331696250973.7551742-CDS-E-siliculosus-1a_M_contig8:1915026..1915333Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1915027..1915333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16198.1

>prot_E-siliculosus-1a_M_contig8.16198.1 ID=prot_E-siliculosus-1a_M_contig8.16198.1|Name=mRNA_E-siliculosus-1a_M_contig8.16198.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=289bp
MTEGVAMSEVDEVQDRVMEIAALLKNKAPHLAPSVIPRPYKHAAANIVTL
CSTPRQRADAEAFLASKAESATADDVAAEGKKGRGEEGQQIESEDAAEGG
RHHVVLETETDIATRTFRITAAKLGGRIDATLSDLNLLMDLLLNAPRQEL
EPYVERFAAANELDPSTAALALHGACSLAYALQVATSSIAGWNGFVGSHR
LPLAGDVDMTVVMKELFRPPPTPPASPRSHSKSKTKGKKGGAKKKKAAAA
AAAAAAAAGGESGAAGVEGGVSGKGKTAKKGSKRKKQG*
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mRNA from alignment at E-siliculosus-1a_M_contig8:1912551..1915720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16198.1 ID=mRNA_E-siliculosus-1a_M_contig8.16198.1|Name=mRNA_E-siliculosus-1a_M_contig8.16198.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3170bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1912551..1915720+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCTCACCCAACAACAGAGGTACTAAACAGAGGTCACGAGTCACGAGGCCA
CCTCTCGAGCCACTCAAGCAACGGGTACTGCTGTAGAGCGGACGACACGA
CCATGACCGAAGGTGTCGCGATGAGTGAGGTGGATGAGGTCCAAGATCGC
GTGATGGAGATCGCCGCCCTGCTGAAAAACAAGGCACCGCATCTGGCCCC
CAGCGTTATCCCGCGACCATATAAACACGCCGCCGCCAACATTGTGACGC
TGTGCTCGACGCCCAGGCAACGGGCAGACGCCGAAGCCTTCTTGGCGTCC
AAAGCGGAGAGTGCTACCGCCGATGACGTTGCGGCTGAGGGGAAGAAGGG
TCGCGGGGAAGAGGGGCAGCAGATCGAATCGGAGGATGCGGCGGAAGGCG
GGAGACATCATGTCGTCCTCGAGACCGAGACCGACATCGCGACCAGGACG
TTTCGGATTACTGCCGCCAAGGTACGGCTGGCTGCCTGTGCGTACTACTG
TACATACCTTCCTGCGTTTAATATTGCTGCGCGTTTGGTTCTAGGAAGAT
GCGGCGAATCAATTGGTGCGAGTTATGCCTAGTAGCACGCCTGCAAGAAC
ACGCCGTTGAGAGACTTAGCATGTTATCAATCGCAATGCAGTTTCTGTAA
GGCATGTACGGTAGGCCACACCACGCTCCGTCGCAATGAAGTGCAATACG
CAGACAAACTTAAGTCAGCCGGCAAGACTGGTGGCGTATTGCGGCATCAG
AGAAATCACTGGGATCACTGTCGGTCGGGTGTATGGTATCATTATCATTG
ATGAGAGATCGTTATTGAGTTGAGGCCGACACACGCAGATGAGCTACACG
TGGTGGGACGTTCTTCTATGTTGTCGGGAGCGGTGGGCACTGCCGTTGCG
GACGGTGGAAGAGGCTTGATGTGGAATAGGCGCATATTGATGTGGAATGA
GCGCTTGCCGAGAAGTACTCCGAGGGCCATGGACTGGCCGGACGTTAAGT
TGCAAGAAGATCAGATGAGGAAAGTCAAGGGGGTCAGCCAGGAGAGGAAA
ACACCACAGAGGTGACTCGTCCTCCAGCGCTACGTGGGGAAGCACGCTTG
GACATATTTGCTGACAGGCCGAGGCCTACGTGGACTCTTGTCTTTCGCCG
GTATACGAATACATCCATCGACTAACGGTACTTTACCGATCTACCGCTGC
AAGTGGTCTCTGGTGTTGGAATGAAAGTGGCAATACATACACACCGACAT
GGCGGCTGTACCCCACAACTGTGCAGGTATCTCGTTAGATGGCTGCCGTA
CCACCAGCAGCCCCGCTTAGATTCATGGAATCCCGAGAGGCCATGCACAC
CACTTCGTATCAGAAGCCACCGTTGCTTGGTCACCGACTAAACTGAGCGG
TCAACCACATCTACAGCCGCACTGTCAGGTTTGTATCCCCGAATAACCGG
CGATTCTCCCGCGTCCCTTGTTCGGCGACCCCTCTTGATCGACCCCCGTC
CGCCTCGGCAGCTCGGCGGAAGGATAGACGCGACCTTGTCGGACCTCAAC
CTTCTGATGGATCTGCTCCTGAACGCCCCCCGACAAGAGGTGACTTCAAG
CGATGGTCTTTCGTGTGACCAGCAGTGTTTCTTGGAGACAGGGTTGTAGT
GTACGCTTTCGGCACGAGAAGATATTTAGAGTTTGAACCTTGTAGGCGGA
AGTCTACGCGCTTCCTCTCACAATGTTCACTTTCCTGCTCCCGCCTGTAA
CACGGGACGCACGCATGTTTGTTCTCGTTTCACACAGAACAGTTTGCTGA
TGATTCTCGCCGCTGAACCACGCAACGTATATCTCAGAACAATTTTCATG
CTCCCTCTAAGGCACGCCGTCGTTTGTGGTCTCCTGTGCCACGGCCGCTG
CTCGGCTTGACTGCTTAGTTGGAGCCTTACGTTGAGCGCTTCGCGGCGGC
GAACGAGCTGGATCCCTCCACCGCCGCGCTGGCTTTGCACGGGGCCTGCA
GCCTGGCGTACGCGCTCCAGGTGGCGACGAGGTAGATTGAGCTTCCGCGT
TCCCCTTGCACACCTCGCGGGTACTTCTCCGTCCGTCAACAGAATATATC
GTATTAATGTCGTTTACCTCAGCAGTAGAAAAAGCTCGAGCGACGAAAAG
GCGCCCCTACTGTGGGAAGCATGACGTTGTGCCGCTCACCACAAACTGCT
CTGTGTCTGAAAAAGGTTGTTTGCATTGTGTCGGCCCTTCCTTGCAAGAT
GGTCTGAGGGACACCAAACGTAGCAAAGTCTCCTCGCTCCGTCTTGTTGC
CTAGGTTATCCTGCAGCTGACTCTCTCTGAAGTTGCTGAGTTTCCTCGCT
CCCTCTTGTTGCCTAGGTATTTGGCATTTCGCTCGCTCTCAAGGTTTTCG
GCCTGTGCACGAAACGTCCACGGCTCACCAACGCCTCCGCCACCCCCCGC
TTCGACCTCGTACGCTGACCTATCAGCAGCATTGCCGGCTGGAACGGGTT
CGTTGGAAGCCACCGTCTTCCGCTGGCGGGTGACGTGGACATGACGGTCG
TCATGAAAGAGCTCTTCAGGCCCCCGCCAACCCCCCCTGCATCTCCTCGC
AGTCACAGCAAGAGCAAAACCAAGGGGAAGAAAGGTGGCGCAAAGAAGAA
AAAAGCTGCTGCTGCTGCGGCTGCTGCTGCGGCTGCTGCTGGTGGCGAGT
CGGGGGCAGCGGGGGTAGAAGGAGGGGTGTCAGGGAAGGGGAAGACGGCG
AAAAAAGGGTCGAAACGAAAGAAGCAGGGCTAAGAGGCTGTCACGAAAGC
TGTGTGCTTGTTGCTCTAGCCCGGAGGCGCGAGAGGCCCTTTTTGTTGAG
TAATTTGGCGTGTTGTAAAGTGTACGGTCGTTTCACCTGGTTGCGGAAGG
GTGTACGTTGTCGGCCCCACGGGCAGCCTGGGTTGTTGCCTTGGGCGTGG
CTTCCACTTCGCAGGGTTGCATCATCAGTGGTGCTTGTTGTTTGCCTTGC
GCATTAAAAACATACACCACAAATAAATGCACCGGGCCTTGCGAGCGCAG
TGGAGGTCCTGACCCACAATAATACTGGGCGCTGTGACAGTTCGTCGACA
TGTGGGGATCGAAACACGCCGGCTAGGACAATGAATCATGGACGATTCGC
ATTTTGCTTCTTCTCTGTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1912551..1915720+

>mRNA_E-siliculosus-1a_M_contig8.16198.1 ID=mRNA_E-siliculosus-1a_M_contig8.16198.1|Name=mRNA_E-siliculosus-1a_M_contig8.16198.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1734bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1912551..1915720+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACCGAAGGTGTCGCGATGAGTGAGGTGGATGAGGTCCAAGATCGCGT
GATGGAGATCGCCGCCCTGCTGAAAAACAAGGCACCGCATCTGGCCCCCA
GCGTTATCCCGCGACCATATAAACACGCCGCCGCCAACATTGTGACGCTG
TGCTCGACGCCCAGGCAACGGGCAGACGCCGAAGCCTTCTTGGCGTCCAA
AGCGGAGAGTGCTACCGCCGATGACGTTGCGGCTGAGGGGAAGAAGGGTC
GCGGGGAAGAGGGGCAGCAGATCGAATCGGAGGATGCGGCGGAAGGCGGG
AGACATCATGTCGTCCTCGAGACCGAGACCGACATCGCGACCAGGACGTT
TCGGATTACTGCCGCCAAGATGACCGAAGGTGTCGCGATGAGTGAGGTGG
ATGAGGTCCAAGATCGCGTGATGGAGATCGCCGCCCTGCTGAAAAACAAG
GCACCGCATCTGGCCCCCAGCGTTATCCCGCGACCATATAAACACGCCGC
CGCCAACATTGTGACGCTGTGCTCGACGCCCAGGCAACGGGCAGACGCCG
AAGCCTTCTTGGCGTCCAAAGCGGAGAGTGCTACCGCCGATGACGTTGCG
GCTGAGGGGAAGAAGGGTCGCGGGGAAGAGGGGCAGCAGATCGAATCGGA
GGATGCGGCGGAAGGCGGGAGACATCATGTCGTCCTCGAGACCGAGACCG
ACATCGCGACCAGGACGTTTCGGATTACTGCCGCCAAGCTCGGCGGAAGG
ATAGACGCGACCTTGTCGGACCTCAACCTTCTGATGGATCTGCTCCTGAA
CGCCCCCCGACAAGAGCTCGGCGGAAGGATAGACGCGACCTTGTCGGACC
TCAACCTTCTGATGGATCTGCTCCTGAACGCCCCCCGACAAGAGTTGGAG
CCTTACGTTGAGCGCTTCGCGGCGGCGAACGAGCTGGATCCCTCCACCGC
CGCGCTGGCTTTGCACGGGGCCTGCAGCCTGGCGTACGCGCTCCAGGTGG
CGACGAGTTGGAGCCTTACGTTGAGCGCTTCGCGGCGGCGAACGAGCTGG
ATCCCTCCACCGCCGCGCTGGCTTTGCACGGGGCCTGCAGCCTGGCGTAC
GCGCTCCAGGTGGCGACGAGCAGCATTGCCGGCTGGAACGGGTTCGTTGG
AAGCCACCGTCTTCCGCTGGCGGGTGACGTGGACATGACGGTCGTCATGA
AAGAGCTCTTCAGGCCCCCGCCAACCCCCCCTGCATCTCCTCGCAGTCAC
AGCAAGAGCAAAACCAAGGGGAAGAAAGGTGGCGCAAAGAAGAAAAAAGC
TGCTGCTGCTGCGGCTGCTGCTGCGGCTGCTGCTGGTGGCGAGTCGGGGG
CAGCGGGGGTAGAAGGAGGGGTGTCAGGGAAGGGGAAGACGGCGAAAAAA
GGGTCGAAACGAAAGAAGCAGGGCTAACAGCATTGCCGGCTGGAACGGGT
TCGTTGGAAGCCACCGTCTTCCGCTGGCGGGTGACGTGGACATGACGGTC
GTCATGAAAGAGCTCTTCAGGCCCCCGCCAACCCCCCCTGCATCTCCTCG
CAGTCACAGCAAGAGCAAAACCAAGGGGAAGAAAGGTGGCGCAAAGAAGA
AAAAAGCTGCTGCTGCTGCGGCTGCTGCTGCGGCTGCTGCTGGTGGCGAG
TCGGGGGCAGCGGGGGTAGAAGGAGGGGTGTCAGGGAAGGGGAAGACGGC
GAAAAAAGGGTCGAAACGAAAGAAGCAGGGCTAA
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