mRNA_E-siliculosus-1a_M_contig8.16178.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16178.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16178.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A6H5KGY0_9PHAE (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY0_9PHAE)

HSP 1 Score: 588 bits (1515), Expect = 1.030e-209
Identity = 307/322 (95.34%), Postives = 312/322 (96.89%), Query Frame = 1
Query:   49 MRGFRTMVALNNVLHVGAFLLPISSVLRGNMAPKSTFLPSPAGTPDPAALRRRLTLSAGSDDEGIVASPAALPPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIKEAALPLQKNTAGGLTEKD 1014
            MRGFR MVALNNVLHVGAFL PISSVLRGN APKST+LPSPAGTPDPAALRRRLTLSAGS+DEGI+ASPA LP SGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDD DVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGR+VDGSFRASREDLSLGD RPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGY+HVQTMLAEGKLDCIKEAALPLQ NT GGLT KD
Sbjct:    1 MRGFRAMVALNNVLHVGAFLWPISSVLRGNTAPKSTYLPSPAGTPDPAALRRRLTLSAGSNDEGIIASPAVLPSSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDGRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDCIKEAALPLQMNTTGGLTGKD 322          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A7S0MNQ6_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MNQ6_9CRYP)

HSP 1 Score: 183 bits (465), Expect = 2.840e-51
Identity = 100/233 (42.92%), Postives = 125/233 (53.65%), Query Frame = 1
Query:  268 PSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPR--PFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSF----RASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKL 948
            P   P++ FPGGGI+FWWQAG + ALQE Y L  LD  GASAG+L A               A  L D N +W RP GL G+WG M+  WL ELLPDD    C  RV + V  + P   P RR +V DF +K D+I AC+ASVHIP+F+D   +ARHRG R VDGS     R +      GD +  +      D  +A  R  FL   + EG   + +RGY+H     A   L
Sbjct:   61 PERPPLIVFPGGGIYFWWQAGAVKALQEMYTLDDLDMTGASAGALCAVLAGCNVDMDRAFELASRLADENGVWERPQGLMGIWGGMIRQWLHELLPDDAARRCSGRVAISVTALSPAVPPLRRLSVDDFETKGDVIDACLASVHIPFFLDGKATARHRGARCVDGSLTFALRRTPWLFKPGDRQAALVVHQSHDAGLAGDRPGFLETLSLEGFRELYRRGYDHTHAAHAAAAL 293          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A388K383_CHABU (Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K383_CHABU)

HSP 1 Score: 187 bits (474), Expect = 1.300e-49
Identity = 107/240 (44.58%), Postives = 138/240 (57.50%), Query Frame = 1
Query:  277 KPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGI-----WPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQ-EG-------LLFMRQRGYEHVQTMLAEGKLDCI 957
            +P+LSF GGGIFF+WQ G   AL   ++L   D  GASAG+LAA               A  L   N +W RP GL G+WG M+  WLDELLP +   +C  R+H+ V+ +         F RR V  F SK DLI ACMASVHIP+F+D    AR R    VDGSF AS+  +S   DRPTV+ DY +DE +A++R +FLSL  Q EG       LL M  +G  HV+ +L++ KL  +
Sbjct:  380 RPLLSFQGGGIFFYWQLGAARALSRHFDLDKADMAGASAGALAATLAACEVDAEEATKLAFQLSLDNRVWDRPTGLGGIWGPMIRSWLDELLPPNAAQLCDGRLHIYVLELPSLRRRSPAFVRRGVCQFHSKRDLIDACMASVHIPFFIDGGACARFRDRWCVDGSFLASKHSISPYPDRPTVWVDYMDDEDLASQRLRFLSLGAQGEGPQRTWQWLLTMISKGEAHVEKLLSDHKLAAL 619          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: K0TQT9_THAOC (PNPLA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQT9_THAOC)

HSP 1 Score: 175 bits (443), Expect = 1.940e-48
Identity = 95/231 (41.13%), Postives = 139/231 (60.17%), Query Frame = 1
Query:  280 PVLSFPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDR-VHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASRED-LSLGD-DRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIK 960
            P + FPGGG+FF+WQAGV++ LQE  Y+LS+    GASAG+L+A               AL +   N +W RP+GL G+WG+++EDWLD LLPDD  +   D  +H+LV  +    F +  VS+F  +SDLI+A MASVH+PWF+D + +   RG   +DGSF AS  D LS  D DR  +  D+  D VM  + G+F+ + + + +  +  RG E+ + M   G+  C++
Sbjct:   39 PAIVFPGGGLFFYWQAGVVTHLQEAGYDLSAATMSGASAGALSATLAKTGVSPIDATELALHMSKENGVWERPMGLQGIWGSIIEDWLDRLLPDDAALRVDDGCLHILVTPV--PSFGKSRVSNFEDRSDLIRANMASVHLPWFLDSNLTTHFRGRACIDGSFLASPSDYLSDRDQDRQRLVLDFKRDPVMKDKAGEFIKVVSPQAIWDILDRGKEYARIMERSGEFACLE 267          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A7S0MR98_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MR98_9CRYP)

HSP 1 Score: 173 bits (438), Expect = 1.900e-47
Identity = 91/230 (39.57%), Postives = 127/230 (55.22%), Query Frame = 1
Query:  250 SPAALPPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPR--PFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSF----RASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHV 921
            SP++      P++ FPGGGI+FWWQAG + ALQERY++      GASAG+L A               A  L   N +W R  GL G+WG+++ +WLD +LP++   +CR RV + V  +     P +RR+V DF +K DL++AC+ASVHIP+F+D    + HRG   VDGS     R         +  P +  D+  DE + ARR  FL   +Q+    M Q GY HV
Sbjct:   33 SPSSQITDQPPLIVFPGGGIYFWWQAGAVKALQERYDIDKCSLTGASAGALIAVLAGCKIDMDYALQVAERLAVQNGVWGRACGLMGIWGSIIYEWLDIILPENAAELCRGRVSVSVTSVHSSFPPLKRRSVGDFGTKRDLMQACLASVHIPFFLDGRLFSGHRGAACVDGSLTFVLRGKPWHFRPDEPEPALLVDHRTDEALMARRWGFLQTISQDAFRHMYQLGYAHV 262          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: L1IQE7_GUITC (PNPLA domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQE7_GUITC)

HSP 1 Score: 171 bits (433), Expect = 4.120e-47
Identity = 89/238 (37.39%), Postives = 133/238 (55.88%), Query Frame = 1
Query:  265 PPSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWP-----RPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSF----RASREDLSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLD 951
            P   +P++ FPGGGI+FWWQAGV+  LQ+R N+ S DF GASAGSL+A               A  L +   +WTR  GLAG+WG M+  WLDELLP++   IC DRV ++ + +        P +R++++ F +K DLI+ACMASVH+P F+D   S    G   VDGS     R         D +P++   + +D+ + AR+  FL   + +    M + G ++ + M+ +  L+
Sbjct:   12 PSDSRPLIVFPGGGIYFWWQAGVVQGLQKRINVDSFDFTGASAGSLSAVFAACGVDMMQAFHLAQKLAEEKNVWTRKEGLAGIWGDMIYQWLDELLPENAAEICTDRVDMVAVSVTSVRLSFLPLKRKSITRFKTKKDLIEACMASVHVPMFLDGKMSRSLDGDICVDGSITFVLRNKPWHFKPQDRKPSLMIHHQDDKELMARKWNFLETISLDQFEEMFEMGQKYAEEMIDKKTLE 249          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A7S4C0Y1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Y1_CHRCT)

HSP 1 Score: 170 bits (430), Expect = 2.180e-46
Identity = 105/243 (43.21%), Postives = 141/243 (58.02%), Query Frame = 1
Query:  280 PVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPL-GLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRP----FRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFR----ASREDLSLGDDRPTVYFDYDEDEVMA---ARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIKEAAL 972
            P L+FPGGGIFFWWQAG ++AL ER++L+ +  VGASAG+LAA               A DL D + ++ R   GL GVWG MV +WLDELLP D DV+CR RVH+LV  + PR     F    +SD+ S++DLI   +AS H+P F+D  ++AR RG R VDGS      +S   + L    P V  D   D  M    +RR  FL L +++G+  M + G +HV  M  +G L+ +   AL
Sbjct:   38 PGLAFPGGGIFFWWQAGAVAALNERFDLARVPCVGASAGALAATIAATKVDPHRALDIAADLADRHGVYDRGAWGLYGVWGPMVREWLDELLPKDADVMCRGRVHILVKRV-PRLRHPYFEPVMLSDYRSRADLIDVNLASAHVPLFLDGRWTARLRGMRCVDGSLSLRPDSSLRRVVLPGRAPVVRIDSSGDLRMRERYSRREDFLRLASRDGVEEMLEWGVKHVAQMERDGALELLAPYAL 279          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A7S2IAY4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAY4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.290e-46
Identity = 98/232 (42.24%), Postives = 131/232 (56.47%), Query Frame = 1
Query:  292 FPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASRED---------LSLGDDRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCI 957
            FPGGGIFF+WQAG  S L+E  Y+LSS+   GASAG+L A               AL L +   +W RPLGL GVWG M+E WL++LLP++   +  DR+ LLV  I    FR   +S F SK DL+K  MASVH+PWF+D   ++  R   +VDGSFRA   D         LS  DD   +  D+  D +M  +   F++LT++EG+  + +RG  H + M   G  D I
Sbjct:   94 FPGGGIFFYWQAGAASYLREAGYDLSSVRMSGASAGALVATLTLTDVDFDEATRLALSLAEEAGVWERPLGLQGVWGPMIETWLNDLLPENAVEMVDDRLSLLVTAI--PSFRTDRISSFNSKEDLVKCNMASVHLPWFLDGKLTSNFRDAPHVDGSFRAKPNDYFPELNGQELSEDDDS-LIILDWKADPIMKGKAKDFVTLTSKEGIWGLVERGRSHAKIMDKRGAFDGI 322          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A6U3R5T6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R5T6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.150e-45
Identity = 95/231 (41.13%), Postives = 131/231 (56.71%), Query Frame = 1
Query:  292 FPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASRED----LSLGD-DRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCIKEA 966
            FPGGGIFF+WQAG  S L+E  Y+LS +   GASAG+LAA               AL L +   +W RPLGL GVWG M+E WL++LLPD+   +  +R+ LLV  I    FR   +S F SK DL++  MASVH+PWF+D   ++  R    +DGSFRA  ED    +  G  D   +  D+  D VM  +   F+ LT++EG+  + ++G  + Q M   G  D I ++
Sbjct:   86 FPGGGIFFYWQAGAASYLREAGYDLSDVTMSGASAGALAATLTLADVDFEEATSLALKLAEDAGVWDRPLGLQGVWGPMIETWLNDLLPDNAVEMVDERLSLLVTSI--PSFRTDRISSFESKEDLVRCNMASVHLPWFLDGKLTSNFRQAPRIDGSFRAKTEDYFPQVKNGQVDDSLIILDWKSDPVMEGKTKDFIKLTSKEGIWDLLEQGRSYAQIMDKRGDFDTISQS 314          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Match: A0A7S4JAL6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAL6_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.630e-43
Identity = 98/262 (37.40%), Postives = 143/262 (54.58%), Query Frame = 1
Query:  187 PAALRRRLTLSAGSDDEGIVASPAALPPSGKPVLSFPGGGIFFWWQAGVISALQER-YNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRP-FRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDDRP--TVYFDYDEDEVMAARR-GKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKLDCI 957
            P+A  RRL ++  S  E    S         P L FPGGGIFF+WQAG ++ L+E  Y+LSS+   GASAG+L A               AL       +W RPLGL GVWG+++E WLD+LLP D      D   L ++ + P P F +  V+DF  +SDLI+A MAS+HIPWF+D   + R+R   ++DGSF +   D  + + RP   V  D+ +D  M+ ++ G F+   ++EG+  + +RG  +   M   G  + +
Sbjct:   64 PSAEERRLQMATSSASESSSTSEGKR--ERAPQLIFPGGGIFFYWQAGAVTHLRESGYDLSSVSMSGASAGALTATLAATGVDFLDATDLALQFAQEAGVWDRPLGLQGVWGSLIERWLDDLLPPDAHATANDGPGLQLL-VTPVPSFGKTKVTDFRDRSDLIRANMASIHIPWFLDGKLTTRYRDAEHIDGSFLSKATDY-VTEVRPKNVVRLDWTKDPAMSDKKLGDFVEALSKEGIWDLVERGKSYAALMEERGDFESL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGY0_9PHAE1.030e-20995.34PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S0MNQ6_9CRYP2.840e-5142.92Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A388K383_CHABU1.300e-4944.58Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]
K0TQT9_THAOC1.940e-4841.13PNPLA domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S0MR98_9CRYP1.900e-4739.57Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1IQE7_GUITC4.120e-4737.39PNPLA domain-containing protein n=1 Tax=Guillardia... [more]
A0A7S4C0Y1_CHRCT2.180e-4643.21Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2IAY4_9STRA5.290e-4642.24Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U3R5T6_9STRA2.150e-4541.13Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4JAL6_9STRA1.630e-4337.40Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1674070..1677705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size969
Model size1238
Exons6
Ec32 orthologEc-10_004960.1
Ec32 ortholog descriptionPatatin/Phospholipase A2-related
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG3773@1,KOG3773@2759
EggNOG free text desc.triglyceride catabolic process
Seed eggNOG ortholog2880.D7FNZ7
Seed ortholog evalue3.4e-164
Seed ortholog score584.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16178.1prot_E-siliculosus-1a_M_contig8.16178.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1674291..1677657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936193.4310372-UTR-E-siliculosus-1a_M_contig8:1674069..16742901622936193.4310372-UTR-E-siliculosus-1a_M_contig8:1674069..1674290Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1674070..1674290 -
1696250971.370633-UTR-E-siliculosus-1a_M_contig8:1674069..16742901696250971.370633-UTR-E-siliculosus-1a_M_contig8:1674069..1674290Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1674070..1674290 -
1622936193.5514586-UTR-E-siliculosus-1a_M_contig8:1677657..16777051622936193.5514586-UTR-E-siliculosus-1a_M_contig8:1677657..1677705Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1677658..1677705 -
1696250971.456409-UTR-E-siliculosus-1a_M_contig8:1677657..16777051696250971.456409-UTR-E-siliculosus-1a_M_contig8:1677657..1677705Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1677658..1677705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936193.4486508-CDS-E-siliculosus-1a_M_contig8:1674290..16744991622936193.4486508-CDS-E-siliculosus-1a_M_contig8:1674290..1674499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1674291..1674499 -
1696250971.3806267-CDS-E-siliculosus-1a_M_contig8:1674290..16744991696250971.3806267-CDS-E-siliculosus-1a_M_contig8:1674290..1674499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1674291..1674499 -
1622936193.4691947-CDS-E-siliculosus-1a_M_contig8:1674748..16748131622936193.4691947-CDS-E-siliculosus-1a_M_contig8:1674748..1674813Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1674749..1674813 -
1696250971.3885267-CDS-E-siliculosus-1a_M_contig8:1674748..16748131696250971.3885267-CDS-E-siliculosus-1a_M_contig8:1674748..1674813Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1674749..1674813 -
1622936193.4849508-CDS-E-siliculosus-1a_M_contig8:1675499..16756451622936193.4849508-CDS-E-siliculosus-1a_M_contig8:1675499..1675645Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1675500..1675645 -
1696250971.4051569-CDS-E-siliculosus-1a_M_contig8:1675499..16756451696250971.4051569-CDS-E-siliculosus-1a_M_contig8:1675499..1675645Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1675500..1675645 -
1622936193.501205-CDS-E-siliculosus-1a_M_contig8:1676195..16763121622936193.501205-CDS-E-siliculosus-1a_M_contig8:1676195..1676312Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1676196..1676312 -
1696250971.4189796-CDS-E-siliculosus-1a_M_contig8:1676195..16763121696250971.4189796-CDS-E-siliculosus-1a_M_contig8:1676195..1676312Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1676196..1676312 -
1622936193.522259-CDS-E-siliculosus-1a_M_contig8:1676685..16768471622936193.522259-CDS-E-siliculosus-1a_M_contig8:1676685..1676847Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1676686..1676847 -
1696250971.4295537-CDS-E-siliculosus-1a_M_contig8:1676685..16768471696250971.4295537-CDS-E-siliculosus-1a_M_contig8:1676685..1676847Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1676686..1676847 -
1622936193.5373094-CDS-E-siliculosus-1a_M_contig8:1677387..16776571622936193.5373094-CDS-E-siliculosus-1a_M_contig8:1677387..1677657Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1677388..1677657 -
1696250971.4458315-CDS-E-siliculosus-1a_M_contig8:1677387..16776571696250971.4458315-CDS-E-siliculosus-1a_M_contig8:1677387..1677657Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1677388..1677657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16178.1

>prot_E-siliculosus-1a_M_contig8.16178.1 ID=prot_E-siliculosus-1a_M_contig8.16178.1|Name=mRNA_E-siliculosus-1a_M_contig8.16178.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=323bp
MRGFRTMVALNNVLHVGAFLLPISSVLRGNMAPKSTFLPSPAGTPDPAAL
RRRLTLSAGSDDEGIVASPAALPPSGKPVLSFPGGGIFFWWQAGVISALQ
ERYNLSSLDFVGASAGSLAATLAACDADMDLAMKLALDLCDTNEIWTRPL
GLAGVWGAMVEDWLDELLPDDVDVICRDRVHLLVIGIWPRPFRRRAVSDF
TSKSDLIKACMASVHIPWFMDKHFSARHRGGRYVDGSFRASREDLSLGDD
RPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYEHVQTMLAEGKL
DCIKEAALPLQKNTAGGLTEKD*
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mRNA from alignment at E-siliculosus-1a_M_contig8:1674070..1677705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16178.1 ID=mRNA_E-siliculosus-1a_M_contig8.16178.1|Name=mRNA_E-siliculosus-1a_M_contig8.16178.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3636bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1674070..1677705- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCAGCACCAATCTCGCCGCCCGTGGGGCCACCCTGGCGGCTAGCAGCAT GCGCGGCTTCAGGACGATGGTAGCGCTCAACAACGTCCTTCACGTGGGCG CCTTCCTTTTGCCAATCTCCTCTGTTCTACGCGGCAACATGGCGCCGAAA TCGACCTTTCTCCCCTCTCCCGCGGGGACACCTGATCCCGCCGCGTTGCG GAGACGGTTGACGTTGTCAGCAGGCTCCGACGACGAGGGCATCGTCGCGT CTCCTGCTGCCTTACCACCATCCGGCAAGCCAGTACTGAGCTTTCCCGGG GGTGGGATTTTCTTTTGGGTGAGCCCCTTTGCCTGGAGTATCTACTGTAC GACAAGCTCAATTTACATGCAGCGCGGCGTTGTACGGCAGCAGCAGCGAG CATCGCGCCAACAAGCCCGACACGGTGTGTGAGAGCGATGGCAGTGCGGA CAAAGGCTGGCAATGCAGAATGCACACAGGATCAGTATCTTCGCCCAACT TGCACTACCTCCGTAACCCCCAAACGAACGCTCGACCACACTGACCGGCG ATGATGCAGCAGTATACAGACACCCTATGTTCAAGGTACATGTACTGCAG AGGACCAAGCCGTTACAGCAGTAGTAGATATCATGTCGTATGCAAAGTTG TTCTGGGGTGTCGATCAATCGCACTATGGTGACCTCGAAAGCATAAAAAA CTTGGGATCAGGGCGACCACGACACAGCTCATACACATACTCTTCATGTT GCTGGGCGCTACGCCCACACTCGTCTCGTCGTTTCCGAGACTGTCGTCAG CTTGAGGTAACCCCTTCCTCCGACCGTCCGTGCTCTCCCCCTTTGCTTGC TTGACCAGTGGCAAGCGGGTGTCATTAGCGCGTTGCAGGAGCGTTACAAC CTATCGTCCCTCGATTTTGTCGGTGCTTCGGCGGGGTCACTCGCGGCCAC GCTTGCCGCTTGTGACGCGGATATGGATCTCGCCATGAAGTTGGCTCTCG ACCTCTGCGATACGAACGAGGTAACGGCGTGGTGCACAGCGCGCAGGGAG CAACGGCGGCACTGATGACAGTGGGGTAGTTGTTCCGCCCTCACGCGTGT ACACTATTTCTTGAGGTCTCGCCCCGACACGAGACGATCGAGGTCACCGT GCAGTGTACCCTCTGCCCAAGCGACTAGGTAGAAGAGACCCAAGTCAGGT CTATTTGTAGTGGACCTCCCTCCTCTCAGCCAGGCACCTCGGCTGTGCTG TGATGTTGAATGTGATCATGTCTTGTCTCTGCCACCCAACGTCCATGGAT CACCAGGACCAGCTCGAGCTGGCCACTTACATTTCTAGTTGTTCACATGT TCAACGCTATTGTCCTGGCGATGCACGTCGTGCGTCACCGCAGATTTGGA CCCGACCGCTGGGACTTGCCGGTGTGTGGGGCGCGATGGTGGAGGACTGG CTCGACGAGCTGCTCCCAGACGACGTGGACGTTATCTGTCGAGACCGCGT GCATTTATTGGTGGGTGCGATTTCACGAAGAAGCGCTGCTGGTCGGCGAA CAAACTCAAAGATAACCGCTACGCGCCTCGCACCTGGTGTATCAGGGAAC TATTATTCTTGCTTCGGCGTCAGGACGTGCTTGTGCCTCCTGTACAGTAT CGAAAACAACTGGAAATGTTTCATCAAGCAAGCAAGGGTTCACGTTTGGG GTGGGGGAGATATGAGTGCTTCCTGAAGTGATTCATTCCCGCCGTCAGGC CACTCGCCTCTATAGACAGATGCAGCCTTCGCCACCGCCGGGTTGTGGCC GTTGGTTTGGCCACCGATGGAGCTGTGCCTACTTGCAACATCTTAACGTT CTGGGTTGCAGGACGCCGTACGTTCCATACTATGTAGAGGACCTGAAAAT TCTATTCCGCATTCTGCTTGTCATCGACAGCACGTAGGTTTTGGGCAGAT TGTTCGCAATCTCTTCCAGTTTGGTCGGAAAGCTTACCTCTCTATCGATC CATACGTTCCGAAACAATTTCTCGTGTCCAAAATGTGGGGTTTTGAATCT TCTACATCAGGTGATAGGGATCTGGCCCAGACCGTTCAGGCGACGAGCGG TGTCGGACTTCACGAGCAAGAGTGATCTGATCAAGGCGTGCATGGCCTCC GTACACATCCCTTGGTTCATGGACAAGCACTTCTCGGCACGACATAGGGG GGGGCGGTACGTAATCGGCACATACGTACACGGTTCTAGAGTTTGTAATA TTCCCCGAAGGAAGCCTGACCAGCACGCCGTGGCTGTCTGTGCCGGTGTG TTGTAACACGCTGCTACGCTGCAGGTCTTCATTTTGGGGCTTTGGTTATA GCTTGTTGCAACTTATTGCTTGCTCGTATGGTTGGCGGACTCGAGGAATG ACCCCCAACTGTCCGCCGCAGCCCGTAAACGCATCTCGTGTGCAAGGCAG AGGTACTCGTTTTGGAGACTCCACGTTTTTGTGGCAGGTTTTTCGGCCAA GCCATTGCGTTTGTGCAACAACAGAGTAGGCGTACCTGGCGGGGTGCCAC GCACGAAGACATCGGCACTGTGCGAAATGCTATATAGAAAAGGTGTTTGT GGCTCCATGTCAGAGCTCGAATCTCGAAACATTCCCAGAAAAAAATGCCA ACCGTTCTGCGCTCGACCAAGGAATGTGATCCCCTCCAGGCTTGACGCCC CCCTGATCCCCCGCCTTGCCGTGTCGTTGACATTGCGTTTCGCTCCCTTT GGGTTTTCCGGGGTGCAATACAGCAGTACAGCTGGTGTAGCGGCCCATTC TGCGGCGTCAAAATGATGATGTTTTTTTCCGAGGTTCTGGTATTGTCGTT CACCCTTGAGACCTTCCTCAACCGACCGCCTCTCGTCGCCAGGTACGTCG ACGGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCTGGGAGACGACAGA CCAACAGGTGAGGAGCACCATTTTCATAAAAGAAGGGCGCAAAGGCACAC AAATTCTGTACCAAATGTGGTGAACGAGCACGTTCTGTTTCACGAAACGC GAAACCGCAAACTGCAGGCTTGAGACACAAGCTTCCGAGAGACGCAAGCT TCGCGAGAAACAGTGCATTATTTGGTGTTGGTTTTACCTCCAACAGCCCG ATTGACGCCCTTGCGGCACCCTTTCCTCAACATGTCCTTGCTCTCAATCG TTCAAGTGTACTTCGACTACGATGAAGACGAGGTGATGGCAGCGAGGCGA GGCAAGTTCCTGAGCCTCACGAACCAGGAAGGGTTGTTGTTCATGAGGCA AAGGGGCTACGAGCACGTGCAGACGATGCTGGCGGAGGGAAAGCTCGACT GTATCAAAGAGGCGGCCCTACCTTTGCAGAAGAACACTGCCGGAGGATTG ACCGAGAAAGACTAGCGCGGGTCTGCTATTCATCGTCGAGGGAGAACGCA GAAGCCGGCGGTTTTGCACGAGTCGGGGAGAGAGCGCACCCTTTCTGCGT CAAGAAATCAGAAACCGGACAGTTGTGGCAATTCATGTCTTGTCTTTTCC TTTGCTAACTCCTGGAGACACTCACTTCCTGCCGGCGTTTGCGTGCTGCC GCGAGTGGTCCGGGAATCGTACTGAGCTGCGACACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1674070..1677705-

>mRNA_E-siliculosus-1a_M_contig8.16178.1 ID=mRNA_E-siliculosus-1a_M_contig8.16178.1|Name=mRNA_E-siliculosus-1a_M_contig8.16178.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1938bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1674070..1677705- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGCGGCTTCAGGACGATGGTAGCGCTCAACAACGTCCTTCACGTGGG
CGCCTTCCTTTTGCCAATCTCCTCTGTTCTACGCGGCAACATGGCGCCGA
AATCGACCTTTCTCCCCTCTCCCGCGGGGACACCTGATCCCGCCGCGTTG
CGGAGACGGTTGACGTTGTCAGCAGGCTCCGACGACGAGGGCATCGTCGC
GTCTCCTGCTGCCTTACCACCATCCGGCAAGCCAGTACTGAGCTTTCCCG
GGGGTGGGATTTTCTTTTGGATGCGCGGCTTCAGGACGATGGTAGCGCTC
AACAACGTCCTTCACGTGGGCGCCTTCCTTTTGCCAATCTCCTCTGTTCT
ACGCGGCAACATGGCGCCGAAATCGACCTTTCTCCCCTCTCCCGCGGGGA
CACCTGATCCCGCCGCGTTGCGGAGACGGTTGACGTTGTCAGCAGGCTCC
GACGACGAGGGCATCGTCGCGTCTCCTGCTGCCTTACCACCATCCGGCAA
GCCAGTACTGAGCTTTCCCGGGGGTGGGATTTTCTTTTGGTGGCAAGCGG
GTGTCATTAGCGCGTTGCAGGAGCGTTACAACCTATCGTCCCTCGATTTT
GTCGGTGCTTCGGCGGGGTCACTCGCGGCCACGCTTGCCGCTTGTGACGC
GGATATGGATCTCGCCATGAAGTTGGCTCTCGACCTCTGCGATACGAACG
AGTGGCAAGCGGGTGTCATTAGCGCGTTGCAGGAGCGTTACAACCTATCG
TCCCTCGATTTTGTCGGTGCTTCGGCGGGGTCACTCGCGGCCACGCTTGC
CGCTTGTGACGCGGATATGGATCTCGCCATGAAGTTGGCTCTCGACCTCT
GCGATACGAACGAGATTTGGACCCGACCGCTGGGACTTGCCGGTGTGTGG
GGCGCGATGGTGGAGGACTGGCTCGACGAGCTGCTCCCAGACGACGTGGA
CGTTATCTGTCGAGACCGCGTGCATTTATTGATTTGGACCCGACCGCTGG
GACTTGCCGGTGTGTGGGGCGCGATGGTGGAGGACTGGCTCGACGAGCTG
CTCCCAGACGACGTGGACGTTATCTGTCGAGACCGCGTGCATTTATTGGT
GATAGGGATCTGGCCCAGACCGTTCAGGCGACGAGCGGTGTCGGACTTCA
CGAGCAAGAGTGATCTGATCAAGGCGTGCATGGCCTCCGTACACATCCCT
TGGTTCATGGACAAGCACTTCTCGGCACGACATAGGGGGGGGCGGTGATA
GGGATCTGGCCCAGACCGTTCAGGCGACGAGCGGTGTCGGACTTCACGAG
CAAGAGTGATCTGATCAAGGCGTGCATGGCCTCCGTACACATCCCTTGGT
TCATGGACAAGCACTTCTCGGCACGACATAGGGGGGGGCGGTACGTCGAC
GGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCTGGGAGACGACAGACC
AACAGGTACGTCGACGGTTCCTTCAGGGCGAGCCGCGAAGACCTATCGCT
GGGAGACGACAGACCAACAGTGTACTTCGACTACGATGAAGACGAGGTGA
TGGCAGCGAGGCGAGGCAAGTTCCTGAGCCTCACGAACCAGGAAGGGTTG
TTGTTCATGAGGCAAAGGGGCTACGAGCACGTGCAGACGATGCTGGCGGA
GGGAAAGCTCGACTGTATCAAAGAGGCGGCCCTACCTTTGCAGAAGAACA
CTGCCGGAGGATTGACCGAGAAAGACTAGTGTACTTCGACTACGATGAAG
ACGAGGTGATGGCAGCGAGGCGAGGCAAGTTCCTGAGCCTCACGAACCAG
GAAGGGTTGTTGTTCATGAGGCAAAGGGGCTACGAGCACGTGCAGACGAT
GCTGGCGGAGGGAAAGCTCGACTGTATCAAAGAGGCGGCCCTACCTTTGC
AGAAGAACACTGCCGGAGGATTGACCGAGAAAGACTAG
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