mRNA_E-siliculosus-1a_M_contig8.16174.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Match: A0A6H5KTC0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC0_9PHAE) HSP 1 Score: 467 bits (1202), Expect = 2.780e-155 Identity = 366/652 (56.13%), Postives = 370/652 (56.75%), Query Frame = 2
Query: 167 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRNYEHHGVPGMGSGGGGGSHPYGLQLHGGGVXXXXASSMDAALGALMQAPTMAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSGRSPFEDESLRPGAEAKANSSSSPGDGPSSPLMSTVDLSSKFQAQXXXXXXXXXXXXXXXEGSFVSDGGAGAPPVAPPPPHGSGPNSATAGAXXXPSVXXXXXXXXXXXXXQPPPAEQTGKKFKLIKPDGFHSSASDKVLQARYGHTKIVKEFGAPPTAAQLGGAGPPQMGAGGAGGGYMAGPAMPLPGXXXXXXXXXXXXXXXXXQYGMPLLRQQQAAGGGQGHYGQPFGAPPLP--QAAPQGYHQASRPS 1573
MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADII XXXXXXXXXXXXXXXXXXXXXXXXXX A VEQRNS+RLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPR+YEHHGVPGMGS XX ASSMDAALGALMQAPTM FSGR PFEDESLRPGAEAKANSSSSPGDGPSSPLMSTVDLSSKFQAQ EGSFV PV HGS PN ATAGA PSVXXXXXXXXXXXXX PPAEQTGKKFKLIKPDGFHSSASDKVLQARYGHTKIVKEFGAPPTAAQLGGA GGYMAGP MPLPG QYGM + QQA GGGQGHYGQPFGAP QAAP+GYHQASRPS
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSYRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRSYEHHGVPGMGSXXXXXXXXXXXXXXXXXXXXGGASSMDAALGALMQAPTMVPLAPRPGAGMAGPPPMXXXXXXXXXXXXVYPPGPAGFPGAQQPGSYSPPGEGXXXXXYPAPPGASPPAATGSLPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTEVASPAPKGDLAGTGPPDAAAAAAATGGPRSFPGVAVQLAAXXXXXXXXXXXXXSPAAAPKAGEDFSGRPPFEDESLRPGAEAKANSSSSPGDGPSSPLMSTVDLSSKFQAQVAVSGAGAGAAAV--EGSFVGGXXXXXXPVXXXXXHGSEPNCATAGAAPPPSVXXXXXXXXXXXXXXXPPAEQTGKKFKLIKPDGFHSSASDKVLQARYGHTKIVKEFGAPPTAAQLGGAK----------GGYMAGPPMPLPGPPPNINGYAQKPQRQA-QYGM--MPPQQAVGGGQGHYGQPFGAPXXXXXQAAPRGYHQASRPS 637
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Match: D7FP01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP01_ECTSI) HSP 1 Score: 216 bits (549), Expect = 1.730e-64 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 2
Query: 167 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 592
MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 142
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Match: A0A835YRJ6_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ6_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.440e-30 Identity = 93/151 (61.59%), Postives = 113/151 (74.83%), Query Frame = 2
Query: 167 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYA 619
MFNFL QG +G+++AP+QS E QLLIAIQNRQ DK + ++ + NTA D GV P+HMACQ G L++RL ELG D+ XXXXXXXXXXXXXXXXXXXXXXX V+ RN+ R + YD+AT+HV+RQ+LLPLQLKAEA NP A
Sbjct: 1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSA 151
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Match: D7FP00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP00_ECTSI) HSP 1 Score: 107 bits (266), Expect = 5.120e-23 Identity = 91/111 (81.98%), Postives = 91/111 (81.98%), Query Frame = 2
Query: 920 MSTVDLSSKFQAQXXXXXXXXXXXXXXXEGSFVSDGGAGAPPVAPPPPHGSGPNSATAGAXXXPSVXXXXXXXXXXXXXQPPPAEQTGKKFKLIKPDGFHSSASDKVLQAR 1252
MSTVDLSSKFQAQ XXXXXXXXX SFV GAPPVAP PPHGSGPNSATAGAXXX XXXXXXXXXXXXX PAEQTGKKFKLIKPDGFHSSASDKVLQAR
Sbjct: 1 MSTVDLSSKFQAQVAVSGAXXXXXXXXX--SFVGXXXXGAPPVAPLPPHGSGPNSATAGAXXXXXXXXXXXXXXXXXXXXXXPAEQTGKKFKLIKPDGFHSSASDKVLQAR 109
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Match: A0A4D9DC57_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC57_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 4.210e-17 Identity = 62/159 (38.99%), Postives = 88/159 (55.35%), Query Frame = 2
Query: 167 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRG---VRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXX-QGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTM 631
MF FL QG +GE++APV++ QL AI+ + DK +LL+ +GV N A D G P+H ACQ GN ++ +L+E+GAD+ + G V +RN++R TAYDVA H++RQFLLPLQL+ E P+ A T+
Sbjct: 1 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQMMIDKLMEMGADVRSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRTE---PEPAAGTL 154
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Match: W7TGZ7_9STRA (Serine threonine-protein phosphatase 6 regulatory n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGZ7_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 6.120e-17 Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query: 161 TAMFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRG---VRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXX-QGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAE 598
+ MF FL QG +GE++APV++ QL AI+ + DK +LL+ +GV N A D G P+H ACQ GN ++ +L+E+GAD + G V +RN++R TAYDVA H++RQFLLPLQL+AE
Sbjct: 20 SGMFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE 167
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Match: A0A7S3JRB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRB0_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.740e-8 Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 2
Query: 182 LQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLE---VKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADI-ITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEA 601
L ++GE++APVQ++ +L I+I+ R + ELL V +G N + D + P+H+AC V+ LL GAD+ + +GA++ RN+ T YDVA D +RQ+LLPLQL+AEA
Sbjct: 12 LLNRIGEVVAPVQNENQELFISIRRRDWPRTHELLSSPNVDALGKNGSVD--MTPLHVACAEDFVQCVEYLLVNGADVNVRDTRAHETPLHHGARGGHSRVCRLLVERGASLVARNARNQTPYDVAKDLSLRQWLLPLQLRAEA 153 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16174.1 >prot_E-siliculosus-1a_M_contig8.16174.1 ID=prot_E-siliculosus-1a_M_contig8.16174.1|Name=mRNA_E-siliculosus-1a_M_contig8.16174.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=469bp MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTAback to top mRNA from alignment at E-siliculosus-1a_M_contig8:1650488..1656864+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16174.1 ID=mRNA_E-siliculosus-1a_M_contig8.16174.1|Name=mRNA_E-siliculosus-1a_M_contig8.16174.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6377bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1650488..1656864+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1650488..1656864+ >mRNA_E-siliculosus-1a_M_contig8.16174.1 ID=mRNA_E-siliculosus-1a_M_contig8.16174.1|Name=mRNA_E-siliculosus-1a_M_contig8.16174.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2814bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1650488..1656864+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |