mRNA_E-siliculosus-1a_M_contig8.16173.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16173.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16173.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16173.1 vs. uniprot
Match: D7FP02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP02_ECTSI)

HSP 1 Score: 556 bits (1432), Expect = 2.500e-199
Identity = 287/295 (97.29%), Postives = 290/295 (98.31%), Query Frame = 1 
Query:    1 MLVAPSLNDAAFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVIEGLKGVRSPLPINDDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKASPVHGSTDSLSLLIRLDCSSAPTHEACGILRYEVTEKPPKGSPENAKPRQVAQGTAVVADGRLTPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEVAATTFPRAPRLVTLDATRSDTEASTVIVRYKLSEPGVVHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSAGDDEEEEGSHSALEGSQV 885
            MLVAPSLNDA FKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVIEGLKGVRSPLPINDDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKA+PVHGSTDSLSLLIRLDCSSAPTHEACG LRYEVTEKPPKGSP NAKPRQVAQGTAVVADGRLTPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEVAATTFPRAPRLVTLDA RSDTEASTVIVRYKLSEPGVVHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSAGD+EEE+GS SALEGSQV
Sbjct:    1 MLVAPSLNDAVFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVIEGLKGVRSPLPINDDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKATPVHGSTDSLSLLIRLDCSSAPTHEACGTLRYEVTEKPPKGSPANAKPRQVAQGTAVVADGRLTPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEVAATTFPRAPRLVTLDAARSDTEASTVIVRYKLSEPGVVHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSAGDEEEEDGSDSALEGSQV 295
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP02_ECTSI2.500e-19997.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1646685..1649563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size897
Model size897
Exons5
Ec32 orthologEc-10_005000.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16173.1prot_E-siliculosus-1a_M_contig8.16173.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1646685..1649563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936192.898942-CDS-E-siliculosus-1a_M_contig8:1646684..16468671622936192.898942-CDS-E-siliculosus-1a_M_contig8:1646684..1646867Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1646685..1646867 -
1696250971.0211692-CDS-E-siliculosus-1a_M_contig8:1646684..16468671696250971.0211692-CDS-E-siliculosus-1a_M_contig8:1646684..1646867Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1646685..1646867 -
1622936192.9129124-CDS-E-siliculosus-1a_M_contig8:1647283..16474541622936192.9129124-CDS-E-siliculosus-1a_M_contig8:1647283..1647454Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1647284..1647454 -
1696250971.0398016-CDS-E-siliculosus-1a_M_contig8:1647283..16474541696250971.0398016-CDS-E-siliculosus-1a_M_contig8:1647283..1647454Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1647284..1647454 -
1622936192.9250665-CDS-E-siliculosus-1a_M_contig8:1647623..16477561622936192.9250665-CDS-E-siliculosus-1a_M_contig8:1647623..1647756Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1647624..1647756 -
1696250971.0593638-CDS-E-siliculosus-1a_M_contig8:1647623..16477561696250971.0593638-CDS-E-siliculosus-1a_M_contig8:1647623..1647756Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1647624..1647756 -
1622936192.9481578-CDS-E-siliculosus-1a_M_contig8:1648105..16483651622936192.9481578-CDS-E-siliculosus-1a_M_contig8:1648105..1648365Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1648106..1648365 -
1696250971.071357-CDS-E-siliculosus-1a_M_contig8:1648105..16483651696250971.071357-CDS-E-siliculosus-1a_M_contig8:1648105..1648365Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1648106..1648365 -
1622936192.9658446-CDS-E-siliculosus-1a_M_contig8:1649413..16495631622936192.9658446-CDS-E-siliculosus-1a_M_contig8:1649413..1649563Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1649414..1649563 -
1696250971.0821545-CDS-E-siliculosus-1a_M_contig8:1649413..16495631696250971.0821545-CDS-E-siliculosus-1a_M_contig8:1649413..1649563Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1649414..1649563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16173.1

>prot_E-siliculosus-1a_M_contig8.16173.1 ID=prot_E-siliculosus-1a_M_contig8.16173.1|Name=mRNA_E-siliculosus-1a_M_contig8.16173.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=299bp
MLVAPSLNDAAFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVIE
GLKGVRSPLPINDDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPAR
VLDWKASPVHGSTDSLSLLIRLDCSSAPTHEACGILRYEVTEKPPKGSPE
NAKPRQVAQGTAVVADGRLTPHVVSGLSPGKAHSISMAIETPGSNGAYGP
TMEVAATTFPRAPRLVTLDATRSDTEASTVIVRYKLSEPGVVHVSLVERV
GHPLALIGTMIGNQHGVGFSVEVGMSAGDDEEEEGSHSALEGSQVNEA*
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mRNA from alignment at E-siliculosus-1a_M_contig8:1646685..1649563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16173.1 ID=mRNA_E-siliculosus-1a_M_contig8.16173.1|Name=mRNA_E-siliculosus-1a_M_contig8.16173.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2879bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1646685..1649563- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGGTCGCCCCTTCACTGAATGATGCGGCCTTCAAGGACACTGTGGC
AAAGCACGGCTCGTTTCCCGTGCGGGCGAGCGAGCGGAGCGCGTACGTCA
TTGATGGCTTGGCTGCCGGGCAGGCTTACGATGTGTTCTTCGTCATAGAG
GTGTGCCCAACACCAGAAGCCAACGCACACACTAATGGATTGAAAAGCGT
CATTTTCACTGAGAGGCATTTTTTGGGTACACATCAAAATGGTCAAAATC
TCTGGAAAGTGGTGCTGGGCAGAAATCTGATGGCCTTGGATACTGATAAT
AGCGAAAGTATCCTACAAGTATGCATGCGCCATGTTTAGTATCCTGCCGT
CTTGTGTCTTCTGCGATCTTCACCCCAGCCTTTGAACTCGCCTCTCATCC
TGTTGTAGGCAGCAAACAGCAACGGTCTCTTCAGCCCTGTCGGTCGAGTG
CTTGGCGTGTCAACAAACACGCTAGCGCCCAACATCTCCTCTCTGAGTCT
AGCCCCGGTAGACGCCCGGACGAACGCTACGCAGCTGTCGCTCTCCATGG
ACGCTGCTGGCGTGCCCTGTCGCGTATGGTACGCAATACAACCTTTGCAA
GATTCAGTGCTCCTCGCGGTGGAAAAAATATCTGCTGAGGAGATAGTGGA
GGCGGCTCTGCCGGACAGCGTTGTGGACCTTCGGCAGGCAAGTGCAGCAG
AGAGTGTGGTGACAACGCAATCCCCTTGAGGGAGGTGATGCTCACCTTGC
CCCTAAAGATGGTGCACAAGCCATGCTCTAGGGTTGGAGATCTCGGCAAC
AAAGAGAGTAACTATAGGTCAAAGGTTTGCATCCGGGAAAGTTTTGCTGG
AAAACGCTGTCCTGTTCAGTCTGAAGATGTCATTGTTCACGGTTGGGTGT
GTGCGAGTAATACCTCGCATACCTCCAGAGAGCAAGCGAGGCCATAGCTA
CAATGTAGCTTTCGCGCCGGAGATATTCGAGGCAGGACTCGACAGCAAGC
ACCCATATCGTCACCCTTGACGTGAAGCAGACACATGTTGAGTCCAATGT
TGCGCAGCCACACTGGGTAGACATGCTGCTATTCTTTCTGGCCCGTGTCC
AGACCAGCAACTTGTTTGTTTCCCAAACTGGGTTATCTCCCAGGGCTCTT
TCATGTAGTCTCTCATGCGTCTCTTCTCCCCTTTCACCGATCGATCAGGG
TCTGAAAGGCGTGCGCTCCCCCCTCCCGATCAATGACGATCTGGAGAGTG
ACACCTGGTATCAGGTATCAGCGGTGTCCGAGCGCGCGGAAGGCGTTTAC
AGCCAGCCAGCCTACGCCGTAGCCAAGACACACCGAGAGCCGGCAAGAGT
ACTCGACTGGAAAGCCTCGCCAGTTCATGGCTCTACCGATTCCCTATCAT
TGCTGATAAGGCTGGACTGCTCCTCAGCACCCACACACGAGGCTTGCGGG
ATTTTGAGGTGCGGAGAGAATGTTGGCGTGATAGAACGAACGGCAACAGT
ACTAGATTGACGTTGGTACGGGAACAAATATCGGGTAGCAGGAGAATGCG
CAATTGTGGTGGCAACTGCAATACCTCCGGCGATGTTTCGTAAGGATCAT
GCCAAGAAAATGCCCGAGAACGGCAACTGTGTTGCGGTCAGAAGAGCATG
ATCTCACGTTTCATCGCCCGGTTGCAGAGGACACAAACAGGCTGTTGTTC
TGCAGGGCTGTCTGTATCTTGATTTAATCACCCGACAAGATTTGCACGTT
CATCCTCTACGTGCCTTCCTATCTGTTTCATCGCATGTGTGCCGCCACCC
GCGTCAGATATGAAGTGACCGAAAAGCCGCCCAAGGGATCCCCAGAGAAC
GCCAAGCCTCGCCAAGTTGCTCAAGGCACGGCGGTAGTTGCTGACGGACG
CTTGACACCCCATGTGGTATCCGGATTGTCACCCGGAAAGGTGCGGTGGC
GCTCCAAAATTTCTCTCTCGTTTCAGTTCCAGTTTATTACCCGCCTTGCC
TCGCCAGCGGAGCGCTGAGTATACTTGAACTTATGACTCATCACAGCCCC
GGTACACCCGTCAACTTTGAACAGACACAACAATTTTCTTATGTACCCGA
CCGTCTCAGGCCCACTCGATTTCAATGGCGATCGAGACTCCGGGCTCCAA
CGGAGCGTACGGTCCGACCATGGAGGTGGCCGCGACTACATTCCCGCGCG
CACCCAGGCTCGTCACGCTAGACGCAACGAGGTCTGACACCGAGGCGTCG
ACCGTGATTGTGCGGTACAAACTTTCCGAGGTAAGACGAGAGAAATTTCT
CATTAGCTCGTATGTCTTCGATTAGGAGAGTACGCCCATGACTGCTGCTA
CAGCGGCGGCTATGTTTGTCACAAGCCGAAAGTTTTCATCCAGTATTGTT
GCGTGTGACGCGGGGAGTTCTTGTACTTCGGGAAAGGATTGAGGAAACCG
TCCTGTCATGGGCCCGTTGGGAGTTTGTCCCGCCCTCCTAGGGGAAAGTC
TCGAATCGTCTTCTTGGTAGTTTAGCGAACGGGCGCAAGAGAATTCTGAG
AGAGAGAAGGAGAGAAGGAGGGGGGGGGGGCGAGAGGGGCCACTCGCACA
GAGAACCTTATTAGAGAGAAACGTCTGAAGAAAGAGAGAGCTTTACCGAC
GTTCCCTCGTTCCATCCCCTCCTTGATAACCTAAACATGGGCACAGCCTG
GTGTGGTGCATGTCAGTCTCGTCGAGAGGGTAGGCCACCCCTTGGCCTTG
ATCGGGACCATGATCGGGAACCAGCATGGCGTGGGCTTTTCTGTGGAAGT
GGGCATGTCAGCAGGCGACGACGAGGAGGAGGAAGGATCCCACTCAGCCT
TGGAAGGATCACAGGTGAACGAAGCTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1646685..1649563-

>mRNA_E-siliculosus-1a_M_contig8.16173.1 ID=mRNA_E-siliculosus-1a_M_contig8.16173.1|Name=mRNA_E-siliculosus-1a_M_contig8.16173.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1794bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1646685..1649563- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGGTCGCCCCTTCACTGAATGATGCGGCCTTCAAGGACACTGTGGC
AAAGCACGGCTCGTTTCCCGTGCGGGCGAGCGAGCGGAGCGCGTACGTCA
TTGATGGCTTGGCTGCCGGGCAGGCTTACGATGTGTTCTTCGTCATAGAG
ATGTTGGTCGCCCCTTCACTGAATGATGCGGCCTTCAAGGACACTGTGGC
AAAGCACGGCTCGTTTCCCGTGCGGGCGAGCGAGCGGAGCGCGTACGTCA
TTGATGGCTTGGCTGCCGGGCAGGCTTACGATGTGTTCTTCGTCATAGAG
GGTCTGAAAGGCGTGCGCTCCCCCCTCCCGATCAATGACGATCTGGAGAG
TGACACCTGGTATCAGGTATCAGCGGTGTCCGAGCGCGCGGAAGGCGTTT
ACAGCCAGCCAGCCTACGCCGTAGCCAAGACACACCGAGAGCCGGCAAGA
GTACTCGACTGGAAAGCCTCGCCAGTTCATGGCTCTACCGATTCCCTATC
ATTGCTGATAAGGCTGGACTGCTCCTCAGCACCCACACACGAGGCTTGCG
GGATTTTGAGGGTCTGAAAGGCGTGCGCTCCCCCCTCCCGATCAATGACG
ATCTGGAGAGTGACACCTGGTATCAGGTATCAGCGGTGTCCGAGCGCGCG
GAAGGCGTTTACAGCCAGCCAGCCTACGCCGTAGCCAAGACACACCGAGA
GCCGGCAAGAGTACTCGACTGGAAAGCCTCGCCAGTTCATGGCTCTACCG
ATTCCCTATCATTGCTGATAAGGCTGGACTGCTCCTCAGCACCCACACAC
GAGGCTTGCGGGATTTTGAGATATGAAGTGACCGAAAAGCCGCCCAAGGG
ATCCCCAGAGAACGCCAAGCCTCGCCAAGTTGCTCAAGGCACGGCGGTAG
TTGCTGACGGACGCTTGACACCCCATGTGGTATCCGGATTGTCACCCGGA
AAGATATGAAGTGACCGAAAAGCCGCCCAAGGGATCCCCAGAGAACGCCA
AGCCTCGCCAAGTTGCTCAAGGCACGGCGGTAGTTGCTGACGGACGCTTG
ACACCCCATGTGGTATCCGGATTGTCACCCGGAAAGGCCCACTCGATTTC
AATGGCGATCGAGACTCCGGGCTCCAACGGAGCGTACGGTCCGACCATGG
AGGTGGCCGCGACTACATTCCCGCGCGCACCCAGGCTCGTCACGCTAGAC
GCAACGAGGTCTGACACCGAGGCGTCGACCGTGATTGTGCGGTACAAACT
TTCCGAGGCCCACTCGATTTCAATGGCGATCGAGACTCCGGGCTCCAACG
GAGCGTACGGTCCGACCATGGAGGTGGCCGCGACTACATTCCCGCGCGCA
CCCAGGCTCGTCACGCTAGACGCAACGAGGTCTGACACCGAGGCGTCGAC
CGTGATTGTGCGGTACAAACTTTCCGAGCCTGGTGTGGTGCATGTCAGTC
TCGTCGAGAGGGTAGGCCACCCCTTGGCCTTGATCGGGACCATGATCGGG
AACCAGCATGGCGTGGGCTTTTCTGTGGAAGTGGGCATGTCAGCAGGCGA
CGACGAGGAGGAGGAAGGATCCCACTCAGCCTTGGAAGGATCACAGGTGA
ACGAAGCTTGACCTGGTGTGGTGCATGTCAGTCTCGTCGAGAGGGTAGGC
CACCCCTTGGCCTTGATCGGGACCATGATCGGGAACCAGCATGGCGTGGG
CTTTTCTGTGGAAGTGGGCATGTCAGCAGGCGACGACGAGGAGGAGGAAG
GATCCCACTCAGCCTTGGAAGGATCACAGGTGAACGAAGCTTGA
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