mRNA_E-siliculosus-1a_M_contig8.16163.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16163.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16163.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16163.1 vs. uniprot
Match: A0A6H5JUB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB2_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 8.110e-47
Identity = 126/203 (62.07%), Postives = 138/203 (67.98%), Query Frame = -3 
Query:    1 PGRKLPAARLRNSREKTSAGKKTSSGTGAKASS--------PSTDDGFTTVS-RKSGKSPKQKTAGDEHTDTGGKSAKKVGAAEVRPNTEDSKTSQDEKSSASEEESEDXXXXXXXXXXXXXXXXY-EEGQLSETESRGVAGDILGARVEDGSFGGSRLQTGSNLEKFVLKELETAVREGSTPHPVVLQLALGTSAIHPGIAQ 579
            PG+K P     N  EK   GKK  SGTG  +SS         S +DGF TV  RK  K  +QK A  E  D+GGK+AK   AA+VRPNT+D KTSQ E SS        XXXXX       XXX   EEGQLSE ESRGVAGDILGA VE+G+FGGSRLQ GSNLEKFVL+ELETAVREGS PHPVVLQLALGTSA+HPGIAQ
Sbjct:    4 PGKKTP-----NPIEKLQQGKKPPSGTGKNSSSGKXXXXXXQSGEDGFITVGGRKWDKPRQQKAAAAEQPDSGGKAAKSAAAAKVRPNTQDPKTSQGENSSXXXXXXXXXXXXXSRQVNDHXXXSSDEEGQLSEAESRGVAGDILGAHVEEGAFGGSRLQKGSNLEKFVLRELETAVREGSNPHPVVLQLALGTSALHPGIAQ 201
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUB2_9PHAE8.110e-4762.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1504184..1504776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size303
Model size593
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16163.1prot_E-siliculosus-1a_M_contig8.16163.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1504333..1504635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936152.5867834-UTR-E-siliculosus-1a_M_contig8:1504183..15043321622936152.5867834-UTR-E-siliculosus-1a_M_contig8:1504183..1504332Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1504184..1504332 +
1696250951.6783717-UTR-E-siliculosus-1a_M_contig8:1504183..15043321696250951.6783717-UTR-E-siliculosus-1a_M_contig8:1504183..1504332Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1504184..1504332 +
1622936152.622071-UTR-E-siliculosus-1a_M_contig8:1504635..15047761622936152.622071-UTR-E-siliculosus-1a_M_contig8:1504635..1504776Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1504636..1504776 +
1696250951.7048502-UTR-E-siliculosus-1a_M_contig8:1504635..15047761696250951.7048502-UTR-E-siliculosus-1a_M_contig8:1504635..1504776Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1504636..1504776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936152.5988734-CDS-E-siliculosus-1a_M_contig8:1504332..15046351622936152.5988734-CDS-E-siliculosus-1a_M_contig8:1504332..1504635Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1504333..1504635 +
1696250951.6921654-CDS-E-siliculosus-1a_M_contig8:1504332..15046351696250951.6921654-CDS-E-siliculosus-1a_M_contig8:1504332..1504635Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1504333..1504635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16163.1

>prot_E-siliculosus-1a_M_contig8.16163.1 ID=prot_E-siliculosus-1a_M_contig8.16163.1|Name=mRNA_E-siliculosus-1a_M_contig8.16163.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=101bp
MIRPQRGLQGCRLPRHAILSRSAGPPRSRCRCRCGIGGFASRGRLPTPPR
WRTIFRPDSFSSLPCWAAPLLPLLFSPIFHRCRCARRLQFSAWATCPTFC
*
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mRNA from alignment at E-siliculosus-1a_M_contig8:1504184..1504776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16163.1 ID=mRNA_E-siliculosus-1a_M_contig8.16163.1|Name=mRNA_E-siliculosus-1a_M_contig8.16163.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=593bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1504184..1504776+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTGCGATGCCCGGGTGGATGGCCGATGTGCCCAGCGCGAGTTGGAGCA
CCACTGGGTGAGGGGTGCTGCCCTCCCGGACGGCCGTCTCCAGCTCTTTG
AGCACGAATTTTTCGAGATTGCTACCTGTCTGCAGGCGGCTACCTCCAAA
TGATCCGTCCTCAACGCGGGCTCCAAGGATGTCGCCTGCCACGCCACGCG
ATTCTGTCTCGCTCAGCTGGCCCTCCTCGTAGTCGTTGTCGTTGTCGTTG
TGGAATTGGCGGCTTTGCGAGTCGGGGTCGTCTTCCGACTCCTCCTCGCT
GGCGGACGATTTTTCGTCCTGACTCGTTTTCGAGTCTTCCGTGTTGGGCC
GCACCTCTGCTGCCCCTACTTTTTTCGCCGATTTTCCACCGGTGTCGGTG
TGCTCGTCGCCTGCAGTTTTCTGCTTGGGCGACTTGCCCGACTTTCTGCT
GACGGTGGTAAAACCATCGTCAGTCGACGGGGAGGAAGCTTTTGCTCCCG
TCCCTGAGGAAGTTTTCTTCCCCGCAGAGGTTTTTTCCCTGCTGTTTCTC
AAACGGGCTGCTGGAAGTTTTCTTCCCGGGATTCGTCATTTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1504184..1504776+

>mRNA_E-siliculosus-1a_M_contig8.16163.1 ID=mRNA_E-siliculosus-1a_M_contig8.16163.1|Name=mRNA_E-siliculosus-1a_M_contig8.16163.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1504184..1504776+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATCCGTCCTCAACGCGGGCTCCAAGGATGTCGCCTGCCACGCCACGC
GATTCTGTCTCGCTCAGCTGGCCCTCCTCGTAGTCGTTGTCGTTGTCGTT
GTGGAATTGGCGGCTTTGCGAGTCGGGGTCGTCTTCCGACTCCTCCTCGC
TGGCGGACGATTTTTCGTCCTGACTCGTTTTCGAGTCTTCCGTGTTGGGC
CGCACCTCTGCTGCCCCTACTTTTTTCGCCGATTTTCCACCGGTGTCGGT
GTGCTCGTCGCCTGCAGTTTTCTGCTTGGGCGACTTGCCCGACTTTCTGC
TGAATGATCCGTCCTCAACGCGGGCTCCAAGGATGTCGCCTGCCACGCCA
CGCGATTCTGTCTCGCTCAGCTGGCCCTCCTCGTAGTCGTTGTCGTTGTC
GTTGTGGAATTGGCGGCTTTGCGAGTCGGGGTCGTCTTCCGACTCCTCCT
CGCTGGCGGACGATTTTTCGTCCTGACTCGTTTTCGAGTCTTCCGTGTTG
GGCCGCACCTCTGCTGCCCCTACTTTTTTCGCCGATTTTCCACCGGTGTC
GGTGTGCTCGTCGCCTGCAGTTTTCTGCTTGGGCGACTTGCCCGACTTTC
TGCTGA
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