mRNA_E-siliculosus-1a_M_contig8.16117.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16117.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16117.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: D8LQG0_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG0_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.420e-49
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 1
Query:    1 MIIKSSDERFKRKTGVGIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEETLQSLTGEVCKGRRYP 246
            MI+ SSDERFKRKTGVGIATG MCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDE TLQSLTGEVCKGRRYP
Sbjct:    1 MIVMSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEATLQSLTGEVCKGRRYP 82          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A835YYC7_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.620e-15
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    7 IKSSDER-FKRKTGVGIATGQMCTGIIGKPNF-RSEYALAGDVVNLAARLAAASEKGENG-VLCDEETLQ 207
            IK + +R F+ + GVGIA+GQ+C G+IGK +F R EYALAGD+VNLAARLAA ++    G VLCD+ T++
Sbjct:   33 IKETAKRDFRHRVGVGIASGQICCGLIGKADFSRCEYALAGDMVNLAARLAARADTEREGCVLCDQYTIE 102          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: D2VCL0_NAEGR (Uncharacterized protein FM146 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL0_NAEGR)

HSP 1 Score: 58.5 bits (140), Expect = 4.200e-8
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   37 KTGVGIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEETLQSLTG 219
            K G+GIA+G+   G +G   +R E+ + GD VNLAARL   SEK +  VLC+EET Q L G
Sbjct:  414 KFGLGIASGKCFIGNVGS-EYRKEFTIYGDKVNLAARLMKESEKNDGVVLCEEETAQMLKG 473          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A7W1VRV3_9BACT (Adenylate/guanylate cyclase domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VRV3_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.270e-6
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   19 DERFKRKTGVGIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEET---------LQSLTGEVCKGRRYP 246
            D+R K   GVG+  G++  G IG P+FR E+ + GD VNLAARL +A+++ +  +L  +E           +S+     KG+  P
Sbjct:  520 DDRIKLSIGVGVNHGEVVVGNIGHPDFRMEFTVLGDGVNLAARLESATKQFKTDLLVGQEAEKLTRDHFIFRSVGAIAFKGKTQP 604          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A7S1T3H5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3H5_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 4.080e-6
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   49 GIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEETLQSLTGEV 225
            G+++G    GIIGKP+ R EYA+ GDVVN AARLA A+      +LC +   Q    ++
Sbjct:   42 GVSSGMCFCGIIGKPDIRCEYAVMGDVVNTAARLAVAAAARGVRLLCTDVAAQGARSDL 100          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A061RLZ7_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLZ7_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 6.100e-6
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   49 GIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEETLQSL 213
            G+ATG    G++G P  R EYA+ GD VN AARLAA + K    +LC +   +++
Sbjct:  188 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 242          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A061RZX5_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZX5_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 6.250e-6
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   49 GIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEETLQSL 213
            G+ATG    G++G P  R EYA+ GD VN AARLAA + K    +LC +   +++
Sbjct:  545 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAV 599          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A061RNJ4_9CHLO (Guanylate cyclase domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNJ4_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 7.990e-6
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 MIIKSSDERFKRKTGVGIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEETLQSLTGEVCKG 234
            ++++ +D RF      G+A G    G++G P+ R EYA+ GD VN AARLAAA+      ++C E    ++  +   G
Sbjct:  198 VLLQQADLRFT----AGLAAGWCYCGLVGSPDSRCEYAVMGDTVNTAARLAAAAADLNRVIVCSESMRDAIHADTGHG 271          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A7S1SUT1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUT1_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.150e-5
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1
Query:   49 GIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDE 195
            GI TG    G++G P  R EYA+ GD+VN AARLA  + K    +LC E
Sbjct:   79 GITTGHCFCGLVGDPKIRCEYAVMGDIVNTAARLAGGAAKRGESILCAE 127          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Match: A0A061RBI5_9CHLO (Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBI5_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.540e-5
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   49 GIATGQMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEETLQSL 213
            G+A+G    G++G P  R EYA+ GD VN AARLA A+ K    ++C E    +L
Sbjct:  481 GLASGNCYCGLVGSPEIRCEYAVMGDTVNTAARLAGAAHKMGRPIICAESLRAAL 535          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LQG0_ECTSI1.420e-4995.12Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A835YYC7_9STRA5.620e-1557.14Guanylate cyclase domain-containing protein n=1 Ta... [more]
D2VCL0_NAEGR4.200e-850.82Uncharacterized protein FM146 n=1 Tax=Naegleria gr... [more]
A0A7W1VRV3_9BACT1.270e-635.29Adenylate/guanylate cyclase domain-containing prot... [more]
A0A7S1T3H5_9CHLO4.080e-644.07Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A061RLZ7_9CHLO6.100e-643.64Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061RZX5_9CHLO6.250e-643.64Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061RNJ4_9CHLO7.990e-634.62Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A7S1SUT1_9CHLO1.150e-548.98Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A061RBI5_9CHLO1.540e-543.64Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1024633..1025045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size249
Model size249
Exons2
Ec32 orthologEc-10_005510.1
Ec32 ortholog descriptionAdenylyl cyclase class-3/4/guanylyl cyclase
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936180.010572-CDS-E-siliculosus-1a_M_contig8:1024632..10247801622936180.010572-CDS-E-siliculosus-1a_M_contig8:1024632..1024780Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1024633..1024780 -
1696250964.4708989-CDS-E-siliculosus-1a_M_contig8:1024632..10247801696250964.4708989-CDS-E-siliculosus-1a_M_contig8:1024632..1024780Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1024633..1024780 -
1622936180.0304399-CDS-E-siliculosus-1a_M_contig8:1024944..10250451622936180.0304399-CDS-E-siliculosus-1a_M_contig8:1024944..1025045Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1024945..1025045 -
1696250964.48135-CDS-E-siliculosus-1a_M_contig8:1024944..10250451696250964.48135-CDS-E-siliculosus-1a_M_contig8:1024944..1025045Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1024945..1025045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16117.1prot_E-siliculosus-1a_M_contig8.16117.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1024633..1025045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16117.1

>prot_E-siliculosus-1a_M_contig8.16117.1 ID=prot_E-siliculosus-1a_M_contig8.16117.1|Name=mRNA_E-siliculosus-1a_M_contig8.16117.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=83bp
MIIKSSDERFKRKTGVGIATGQMCTGIIGKPNFRSEYALAGDVVNLAARL
AAASEKGENGVLCDEETLQSLTGEVCKGRRYP*
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mRNA from alignment at E-siliculosus-1a_M_contig8:1024633..1025045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16117.1 ID=mRNA_E-siliculosus-1a_M_contig8.16117.1|Name=mRNA_E-siliculosus-1a_M_contig8.16117.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=413bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1024633..1025045- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATCATTAAGTCCTCCGATGAGCGGTTCAAGAGGAAAACTGGTGTCGG GATCGCCACGGGTCAAATGTGCACGGGAATCATCGGAAAGCCGAACTTCA GGTGAGGGTTAGAGGCCCTGAAAAAAGCTGTGGTGTACCTTGTGTTGTCG GCCTCGTGGTTGTGGTCGTGCATTCCCGTGTGAGGGACCACGCACACACG GGCCACCTTACGGCCCACCGTGTAATCGCCCGCGCGCACACACCGCAACC TTCACCAAACCCCAGGTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACC TGGCGGCGAGGCTTGCCGCCGCATCGGAGAAGGGAGAAAACGGCGTCCTC TGTGACGAAGAAACGCTACAGTCTCTGACCGGAGAGGTATGCAAGGGCCG TCGATACCCATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1024633..1025045-

>mRNA_E-siliculosus-1a_M_contig8.16117.1 ID=mRNA_E-siliculosus-1a_M_contig8.16117.1|Name=mRNA_E-siliculosus-1a_M_contig8.16117.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1024633..1025045- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATCATTAAGTCCTCCGATGAGCGGTTCAAGAGGAAAACTGGTGTCGG
GATCGCCACGGGTCAAATGTGCACGGGAATCATCGGAAAGCCGAACTTCA
GATGATCATTAAGTCCTCCGATGAGCGGTTCAAGAGGAAAACTGGTGTCG
GGATCGCCACGGGTCAAATGTGCACGGGAATCATCGGAAAGCCGAACTTC
AGGTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACCTGGCGGCGAGGCT
TGCCGCCGCATCGGAGAAGGGAGAAAACGGCGTCCTCTGTGACGAAGAAA
CGCTACAGTCTCTGACCGGAGAGGTATGCAAGGGCCGTCGATACCCATGA
GTCAGAGTATGCCCTAGCCGGGGACGTGGTCAACCTGGCGGCGAGGCTTG
CCGCCGCATCGGAGAAGGGAGAAAACGGCGTCCTCTGTGACGAAGAAACG
CTACAGTCTCTGACCGGAGAGGTATGCAAGGGCCGTCGATACCCATGA
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