mRNA_E-siliculosus-1a_M_contig8.16107.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16107.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16107.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: D8LQH2_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQH2_ECTSI)

HSP 1 Score: 808 bits (2088), Expect = 9.450e-294
Identity = 406/417 (97.36%), Postives = 409/417 (98.08%), Query Frame = 1 
Query:   43 MGFKDAMGAISSVIIIGAASNACNAHVVGSRKHASAAAEACCWNSKRLRPNCHLTGSRRSLSLATDELLTSRSLFLIRGGTSSEPFDESNPQSRWWRSRKRWAKRKAAELAAKEAKESRNHAHPKHVILNLLRRLKRWIGVVVDFTTLKRLRLLRQARRGSWQHGGPIPVRYREVLQELRNEVAAKPGLERRAKKVHHELDTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSPWQYDPAVYFSSDAASL 1293
            MGFKDAMGAISS+IIIGAASNAC+A VVGSRKHASAAAEACCWNSKRLRPN HLTGSRRSLSLATDELLTSRSLFLIRGGTSSE FDESNPQSRWWRSRKRWAKRKAAELAAKEAKESR HAHPKHVILNLLR LKRWIGVVVDFTTLKRLRLLRQARRGSWQHGGPIPVRYR VLQELRNEVAAKPGLERRAKKVHHELDTVA GRFLEAAFW+LEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKS WQYDPAVYFSSDAASL
Sbjct:    1 MGFKDAMGAISSLIIIGAASNACSARVVGSRKHASAAAEACCWNSKRLRPNRHLTGSRRSLSLATDELLTSRSLFLIRGGTSSELFDESNPQSRWWRSRKRWAKRKAAELAAKEAKESRTHAHPKHVILNLLRLLKRWIGVVVDFTTLKRLRLLRQARRGSWQHGGPIPVRYRGVLQELRNEVAAKPGLERRAKKVHHELDTVAFGRFLEAAFWALEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSTWQYDPAVYFSSDAASL 417
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A835ZL56_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL56_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.500e-46
Identity = 95/225 (42.22%), Postives = 126/225 (56.00%), Query Frame = 1 
Query:  655 LGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGAD---------RLRKEDVVDQGC----RGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNS-----KLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSPWQYDPAVYFS 1275
            L RF+E AFW+LEH G  VS  IEE++AWRE +GA          R R  D+V         GAI+V G D   RP+++ R    G + G G S     +  +Y +ERA R   R    YTIV DC G GL  LPP+ +++ MF +LS HYPMRLGH+L  N   SV LCW+V SP++  RTK K+           A+Y+ P++L    GG S ++YD A YF+
Sbjct:    2 LVRFIEGAFWNLEHKGVPVSALIEETVAWRESVGAHAITPASLGARARGRDIVGPLAPALRAGAIVVHGRDRDGRPIMHVRL---GALFGKGYSAEQCLRYAVYTVERAWRARARGVEAYTIVADCRGFGLTHLPPLPFLRAMFGMLSRHYPMRLGHILLCNASASVHLCWRVCSPIVPPRTKDKIVFAREGDRALVARYVAPAELPRALGGASAYEYDAARYFA 223
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: D7FQ39_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ39_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 8.550e-33
Identity = 66/205 (32.20%), Postives = 107/205 (52.20%), Query Frame = 1 
Query:  661 RFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAK-YIHPSQL-LSFAGGKSPWQYDPAVY 1269
            R+LE A+W++E  G+ + D +  ++ WRE      L    V ++   G + V+G D  +RP++++RP L+   + +    L+ + LERA   +P+   Q+ +V DC G G  + PP+  +K  F  +  HYPMRLG+V+  N G  +   WK++S +L+ RTK K+  +       T    I PS L  S  GG   + Y    Y
Sbjct:    3 RYLEMAYWTMESMGQPLPDAVASTVRWREDATPHLLTDNQVAEEAKYGKMYVRGLDRQQRPIIHYRPGLEKSFDTEKGLNLLFHTLERAKGSLPKGQTQFAVVADCSGFGPSKTPPLPMLKTAFITMQRHYPMRLGYVVIVNAGGPITFVWKLISTVLEERTKEKIAFLSKKEAEATLTGLIDPSALPASLPGGLDDFTYSNEEY 207
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A4D9CSV1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSV1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.450e-29
Identity = 70/229 (30.57%), Postives = 115/229 (50.22%), Query Frame = 1 
Query:  601 PGLERRAKKVHHELDTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQ-YTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKY----IHPSQLLSFAGGKSPWQYDPAVYF 1272
            PG+  R   V   +D   + R+  A  W     GK   D +  +I WRE+     L  +DV+ Q   G + V G D   RP++YF PA       +   + ++Y LERA+ L  ++  + Y+ +IDC G  L  +PP+  +K+ F LL HHYP R+G ++F + G +    WK+++PL+   T+ K+  +P+   G+  K     + P +L    GG   + ++   YF
Sbjct:    2 PGIPERGLAVRMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPDDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFIMFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPT---GEEEKILVERVDPQELDRKYGGAKDFTFEAHDYF 227
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A7S2XX21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX21_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.370e-26
Identity = 60/160 (37.50%), Postives = 90/160 (56.25%), Query Frame = 1 
Query:  784 VDQGCR-----GAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMP--RNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQ-TAKYIHPSQLLSFAGGK 1239
            VD G R     G +   G   S  P+VYFRPAL+   + + +  L++Y LERAI+ M   R   ++ +++DC G GL + PP++ +   FK L H+YPMRLG V   N G  + + WK+VSP+L  RT+ K+  +    + Q   +Y++P  L    GGK
Sbjct:   10 VDAGMRREAAGGKMYTLGRGRSGEPLVYFRPALETGSDYEASLHLLVYTLERAIKSMDSKRGVEKFIVLVDCTGFGLSRAPPISLVTGQFKTLMHNYPMRLGKVFVVNAGTPMNMLWKIVSPILNERTRHKVFFLSEKEISQHIPQYVNPDVLEVEFGGK 169
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A1S8VSJ4_9FUNG (CRAL-TRIO domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VSJ4_9FUNG)

HSP 1 Score: 102 bits (254), Expect = 1.840e-20
Identity = 58/236 (24.58%), Postives = 108/236 (45.76%), Query Frame = 1 
Query:  643 DTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTAL------------------------GQTAKYIHPSQLLSFAGGKSPWQYDPAVYFSS 1278
            +T  + R+L+A  W+ +H   R+S     ++ WR +   D +  E+V  +   G  ++ G D   +PV+Y  PA +     D   + ++YNLE+AI LMP       +++D E + +   PP++  ++  + +  HYP RLG     N    + + ++++ P +   TK+K+H++   AL                             YI    LL   GG   +++D + Y+S+
Sbjct:   72 NTACVVRYLKATKWNYDHAVTRLSA----TLQWRREYKPDEILAEEVAPEAETGKEVICGFDKQGQPVLYLIPARENTKNYDRQLRFVVYNLEKAISLMPNGVEGICMIVDYENISMSSAPPLSVTRRFLQTIGDHYPERLGKSFIINPTWYLSVLFRIIGPFMDPVTKSKIHMVDLKALMANPDSDKNSNDSKKPAAEGAGGWADVRNYISKDNLLVEYGGGYKFEWDFSQYWSA 303
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A6H5K6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.610e-19
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 2 
Query: 1307 GRGGGVPIAGHAVVVRPLTKHPFKAGTEHAGFSPDKARTSPSAKHREVFGELHGGCAASC 1486
            G GGGV I  HAVVVRPLT HP++AGTEHAGFS D+A TSPSAK RE+FGE H GCAASC
Sbjct:  181 GVGGGVLIVVHAVVVRPLTSHPYEAGTEHAGFSADQALTSPSAKRREIFGESHEGCAASC 240
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A1Y1YVQ1_9FUNG (CRAL/TRIO domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YVQ1_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 5.420e-19
Identity = 63/214 (29.44%), Postives = 104/214 (48.60%), Query Frame = 1 
Query:  643 DTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNS--KLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKY-IHPSQLLSFA-GGKSPWQYDPAVYF 1272
            D  +L R+L+A  WS+++      D +E++  WRE    + +  E V DQ  + +  V G D+  RPV+Y +   D   + D     KL+I+ LERAI++MP    Q  +++D       +  P+   K+    L++HYP RLG  +  N      + + +V P L   TK K+  +       ++ + I P+ LL    GG  P+ YD   Y+
Sbjct:   58 DDSSLYRYLKATNWSVQN----AFDRLEKTKQWRETFRPNEITFEAVRDQALQKSNYVNGFDMYGRPVIYLKKVADKHQDKDPEEGFKLLIFCLERAIKVMPPTVHQLVVIMDFTLYSESKSIPLNIAKRTIDTLANHYPERLGLSIMYNAPWVFSMFFNMVQPFLDKVTKEKIKFVKKKMADSSSPFAIIPADLLETTYGGNLPFDYDHDQYY 267
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A427YPV0_9TREE (CRAL-TRIO domain-containing protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YPV0_9TREE)

HSP 1 Score: 99.8 bits (247), Expect = 7.810e-19
Identity = 58/204 (28.43%), Postives = 97/204 (47.55%), Query Frame = 1 
Query:  661 RFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSPWQYDPAVYF 1272
            R++ AA W ++   +R+   IE    WR +   + +  EDV  +   G II+ G D   RP++Y RP  +         + +I+NLERAI LMP    Q  I++D +    +  P +   +K+  +L +HY  RLG  L  N+   +   +  +SP +   T+ K+   P     +  + + PSQL    GG     +D  +Y+
Sbjct:   90 RYMRAAKWKMDDAKRRIKGTIE----WRREFKPELIEPEDVSVEAETGKIIISGFDYDARPIIYMRPGRENTETSPRQIRHLIFNLERAIDLMPPGQEQVAIIVDYKSATSQSNPSIGTARKVLNILQNHYVERLGRGLVVNMPWWINAFFSGISPFMDPITRDKIRFNP-----KLTELVPPSQLDYEFGGDYHLNFDHKIYW 284
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Match: A0A507F0S8_9FUNG (Uncharacterized protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F0S8_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 1.810e-18
Identity = 61/193 (31.61%), Postives = 92/193 (47.67%), Query Frame = 1 
Query:  661 RFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGK 1239
            R+L+A  W+LE    +    ++ S+ WR +     +  E+V  +   G   V G     +PV+Y    LD     D N +  ++ +ERAI LMP    + TIV+D EG+GL   PPV++M ++  +   HYP RLGH + ++        W V+SP L    KAK+          T     P +L S A  K
Sbjct:   66 RYLQATHWNLETATAK----LKASLQWRNEFKPSEIPPEEVEPEAVCGKGFVHGFSKDGQPVLYGCGRLDDLKTWDRNLRFCVFLVERAIGLMPEGVEKLTIVLDNEGLGLWNSPPVSFMLQLVSITEKHYPERLGHCILSSPSWFGWGLWNVISPFLDPAIKAKVFFADMGRKTATPTEQTPDELSSGAEKK 254
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQH2_ECTSI9.450e-29497.36CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZL56_9STRA1.500e-4642.22CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
D7FQ39_ECTSI8.550e-3332.20CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A4D9CSV1_9STRA4.450e-2930.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2XX21_9STRA4.370e-2637.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1S8VSJ4_9FUNG1.840e-2024.58CRAL-TRIO domain-containing protein n=1 Tax=Batrac... [more]
A0A6H5K6Y7_9PHAE2.610e-1976.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1YVQ1_9FUNG5.420e-1929.44CRAL/TRIO domain-containing protein n=1 Tax=Basidi... [more]
A0A427YPV0_9TREE7.810e-1928.43CRAL-TRIO domain-containing protein n=1 Tax=Saitoz... [more]
A0A507F0S8_9FUNG1.810e-1831.61Uncharacterized protein n=2 Tax=Chytriomyces confe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:904000..908960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1254
Model size1535
Exons6
Ec32 orthologEc-10_005630.1
Ec32 ortholog descriptionCRAL-TRIO domain
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EggNOG OGsKOG1470@1,KOG1470@2759
EggNOG free text desc.intermembrane phospholipid transfer
Seed eggNOG ortholog2880.D8LQH2
Seed ortholog evalue2.9e-232
Seed ortholog score810.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16107.1prot_E-siliculosus-1a_M_contig8.16107.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 904239..908918 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936175.3913782-UTR-E-siliculosus-1a_M_contig8:903999..9042381622936175.3913782-UTR-E-siliculosus-1a_M_contig8:903999..904238Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 904000..904238 -
1696250962.777414-UTR-E-siliculosus-1a_M_contig8:903999..9042381696250962.777414-UTR-E-siliculosus-1a_M_contig8:903999..904238Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 904000..904238 -
1622936175.534056-UTR-E-siliculosus-1a_M_contig8:908918..9089601622936175.534056-UTR-E-siliculosus-1a_M_contig8:908918..908960Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 908919..908960 -
1696250962.848371-UTR-E-siliculosus-1a_M_contig8:908918..9089601696250962.848371-UTR-E-siliculosus-1a_M_contig8:908918..908960Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 908919..908960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936175.4046476-CDS-E-siliculosus-1a_M_contig8:904238..9043591622936175.4046476-CDS-E-siliculosus-1a_M_contig8:904238..904359Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 904239..904359 -
1696250962.787396-CDS-E-siliculosus-1a_M_contig8:904238..9043591696250962.787396-CDS-E-siliculosus-1a_M_contig8:904238..904359Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 904239..904359 -
1622936175.4182446-CDS-E-siliculosus-1a_M_contig8:904793..9049861622936175.4182446-CDS-E-siliculosus-1a_M_contig8:904793..904986Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 904794..904986 -
1696250962.7990937-CDS-E-siliculosus-1a_M_contig8:904793..9049861696250962.7990937-CDS-E-siliculosus-1a_M_contig8:904793..904986Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 904794..904986 -
1622936175.432182-CDS-E-siliculosus-1a_M_contig8:905736..9058821622936175.432182-CDS-E-siliculosus-1a_M_contig8:905736..905882Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 905737..905882 -
1696250962.8076916-CDS-E-siliculosus-1a_M_contig8:905736..9058821696250962.8076916-CDS-E-siliculosus-1a_M_contig8:905736..905882Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 905737..905882 -
1622936175.4466674-CDS-E-siliculosus-1a_M_contig8:906280..9064541622936175.4466674-CDS-E-siliculosus-1a_M_contig8:906280..906454Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 906281..906454 -
1696250962.8162231-CDS-E-siliculosus-1a_M_contig8:906280..9064541696250962.8162231-CDS-E-siliculosus-1a_M_contig8:906280..906454Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 906281..906454 -
1622936175.4621813-CDS-E-siliculosus-1a_M_contig8:907040..9071831622936175.4621813-CDS-E-siliculosus-1a_M_contig8:907040..907183Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 907041..907183 -
1696250962.8254068-CDS-E-siliculosus-1a_M_contig8:907040..9071831696250962.8254068-CDS-E-siliculosus-1a_M_contig8:907040..907183Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 907041..907183 -
1622936175.481146-CDS-E-siliculosus-1a_M_contig8:908441..9089181622936175.481146-CDS-E-siliculosus-1a_M_contig8:908441..908918Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 908442..908918 -
1696250962.835133-CDS-E-siliculosus-1a_M_contig8:908441..9089181696250962.835133-CDS-E-siliculosus-1a_M_contig8:908441..908918Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 908442..908918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16107.1

>prot_E-siliculosus-1a_M_contig8.16107.1 ID=prot_E-siliculosus-1a_M_contig8.16107.1|Name=mRNA_E-siliculosus-1a_M_contig8.16107.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=418bp
MGFKDAMGAISSVIIIGAASNACNAHVVGSRKHASAAAEACCWNSKRLRP
NCHLTGSRRSLSLATDELLTSRSLFLIRGGTSSEPFDESNPQSRWWRSRK
RWAKRKAAELAAKEAKESRNHAHPKHVILNLLRRLKRWIGVVVDFTTLKR
LRLLRQARRGSWQHGGPIPVRYREVLQELRNEVAAKPGLERRAKKVHHEL
DTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQ
GCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMP
RNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVG
PSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKS
PWQYDPAVYFSSDAASL*
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mRNA from alignment at E-siliculosus-1a_M_contig8:904000..908960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16107.1 ID=mRNA_E-siliculosus-1a_M_contig8.16107.1|Name=mRNA_E-siliculosus-1a_M_contig8.16107.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4961bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:904000..908960- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGCCAACAGGTGGGCGGTGAGTGGTGGCTGCTAGTGCAGGCGATGGGTTT
CAAGGACGCCATGGGCGCAATATCAAGCGTGATCATCATCGGCGCTGCTT
CAAACGCATGTAATGCTCACGTGGTGGGCAGCAGAAAACACGCATCAGCA
GCAGCAGAGGCCTGCTGCTGGAACTCGAAACGGTTGAGACCGAACTGCCA
CCTCACGGGCAGCAGGCGATCGCTGTCGCTTGCAACAGACGAGTTGCTCA
CCAGCAGATCACTCTTTTTGATACGAGGGGGAACGAGCTCAGAACCATTC
GATGAAAGCAACCCTCAGTCGCGGTGGTGGAGATCGCGGAAACGATGGGC
CAAGCGGAAGGCAGCAGAGCTAGCGGCGAAGGAGGCGAAAGAGAGCCGCA
ACCACGCTCACCCAAAACATGTCATCCTAAACCTGCTTCGACGACTGAAG
CGCTGGATTGGCGTGGTGGTCGACTTCACGACGCTGAAGCGTCTTCGCTT
GCTGCGGCAAGCGAGAAGGGTAAGCGCATCGTGACAGCACGTTGGAGACG
CACATACGCAGTATCATGAACGTCGAGGCACAGCCCACAGCAGCAGCAGT
TCACGCAGGGCACGACGCATGATGAATGTTTTGTTCACGACCGACAGAGC
AGTGGTGAAGAGAACCCTCCACATGAAAGGAGACCGTGAACTGTACATAC
TCATTGCTGTTTGCCATTGGCAATTTGTACACGCCTTTCATACTCAAGCT
GATGCTTGGTTACTCTGCGAAAGTCTTGTTATTGCAATTGCAGTAACAAG
TCAACCTACGCTCCGAGTGTCTGATACACAGGACTACATGTAGTCTACCG
CTGTTTTGCCAAACATACGACTGCGGTCACCGCCTGATACAGGGTGCGAC
TGGTGAACGCTAAATTCAGCGGCCTTATCTGTTCACACGCCGCCCAGACT
GCTGTCTATGCTGGGGAGCCAGCTAAATAGGTACTTGTTGAGTTGTGAGA
ACAGGCGGCCTAACTACGACCGTTTCCTGTGGGGTACTGCTGTGCTGCTG
TGCATGTACTTCACTGTACCGTAATTGGCTTGGGGATGGCACCCCCGTGT
CAGCGTTTTCATAGCGTGTTTCTCCACAACTAGGAGGGTGTGAACACCAA
CCGATACCTCTCAGGAAAGCCCTCGACGAGATGTTTCCAAAATCATCCTT
TTCGGCAGTTAGTGGTACCTGGTTGTGGAGAAAAACGCTAACACGGGGGT
GCCATGTCTCCGCCAATTGCGGCACCCCAACAGCAACTATCGTCATCAGG
TTGTACAGCATGCACTTGCTAGATTTTTGCCGAGTTTTCTTACGGTCAAG
TTTTTAAGTTTAGTGTGCCCTTAGTTGAGCCTGAGAATTTCTTAAACCCC
GGGGTACTCGATGAGTATGGTGTGCTCTACAACTGATGTCTCGGAGATGT
AATGCGTCGAGATTTTAGCGCAGGCTCTCAACGCGAGCGGCCACCGGGAT
GCAACCCCCGTCGACCAACTGGAGCGCACTTTCACCTCATCACCGTGGTC
GGTTGGGCCACCTTGAGTAGAGCAAGGCTCTTCTACGTGTAGCCACATCC
GCAGAGTGAAGCGAGCAAAGCTTGAGATCAGGGTCGGGATTCCAGCGAAG
TTCTGACTTTAGGGACCCTCGCTTGTGGTAGTACTCAGCGTGTTTCTGCT
GTGTGTAACTCAACCTCCCGTTTTTTTTATTCCAAGATGGATGGTCTCTC
TCTCTTTGTTTTTTTTTGTATTTGTAGGGGTCGTGGCAGCACGGAGGACC
AATCCCCGTCAGGTATCGAGAGGTGCTGCAGGAGCTGAGGAACGAGGTTG
CGGCGAAACCGGGCCTGGAGAGGCGCGCCAAGAAGGTCCACCACGAGCTA
GATACCGTTGCTCTTGGAAGGTGGGGTCATGAGGTTCGGTAGTTGCCCTA
GCCCTAGGGCGTGCTGCCGCTAGCGGGTGTGTTGGATGTAAAGGGCTTGG
TTGTGGCAGCGCAGGCTCATGGTAGGGCCTCGAAAAACGATTTCTATTGA
TACCACGCTCGTGTGATACGACGGGTGCGGTGCGCTGCAGCTCGTCTTGA
AACAGGGGAGTGACTTATTCTTGATCATGGCATCCAAGGAAACACTCAAA
GCAAACGAAGCAAAGGTAGCGGTGTAGCAGCTCGTGTCGATAGCGTCTGC
TGTGTCTCGATATCCACTCGTCTAGTCGTGACGCTGTTACCGTGTAAGCT
GCACCTGCTTTTGTTTGAAGCATGGCGGGACCACACAATCTCAGCCTGGC
TCTCTTGTGGCGAAGTTTCCTTTGGTGTGAAAGGGCCGATACTGCTGTAC
GCGGGAAGCTTTCAGTTTGCGTATGTTCGCCAGTACAACTGCATAAGGTC
AAGACAACAACAACAACAACAAAGAAACCAAAAAAGAAAACAAGACCCAG
TGGTTGTATCTGTTGCTGTGTTTTGTCTTTACACGTACACGTACGCCGTT
TTCCAGGTTTTTGGAGGCGGCGTTTTGGTCGTTGGAGCACGACGGCAAGC
GGGTGAGCGACTTCATCGAGGAGTCCATCGCCTGGAGGGAAAAGATCGGG
GCAGATCGCCTCCGAAAGGAGGACGTAGTCGACCAAGGATGCCGTGGGGC
CATCATTGTGAAGGGCCACGATCTCAGCAGGTGACGAGACACATACGCGT
ACGTACGCGGGAAGAGTATGGGCTCGCCGCGAGATTCCGAGCAAGAACTC
GTTCGTTACCGAAATAGTCACCGCCTATATTTCCCTGGGTGCTATTTTTC
GGGAGCAAAAGGCCCAAAAGTCGGGGAAAGCGGCGACGCGCCTCCGGGCG
CCTTTTTGTGGTCGGACAACATGGATGGCGCTTTTGTCGTACCCTCCCCC
CCCCACACACGGAGGTCCTACTCGCAATGACGTGCAGCAGTATCATGCGG
CTGTGTTGGTTACCATTTGATTTCACGTCCGACTTGACGTCGGGTTAGTT
AGTCTATGTGTGCACCACCTTGCTGATCATGCGACGGATTGGCTTGGCGG
GTGCTCTGCTGCCCGCTCGTTGTCGTAGGCGACCGGTGGTGTACTTTAGA
CCAGCCCTTGACGGAAGAATGGAGGGAGACGGCAACTCTAAGCTGATGAT
TTACAACCTGGAGAGAGCGATTCGGCTCATGCCAAGAAACAGCTGGCAAT
ATACCATCGTCATCGACTGTGAAGGTATGTGTCAAGTTGAAATTCCATGT
TCCTCTACGACTGACTCGCCCTGACGGCCTCGCGCACGTAGAACTGTTTT
TCCTCGCCTGGGGTCCCCTATTCCCTGCACTTCGTGTGCTTCTTGTGAAC
GCGTGTGTCTCACATTCCGCCTAGTTTCAAGTGGTTCTGAAACATCGGAG
GAGCCCCCTCCCCCTTCCTAGTCTTTGAGACCAAACTTTTGGGCACTACA
TAACGCAACCAAATTCCGCAAGCAATGTGCAGCCCTGCGGTGGTTCACTT
GATGCCGTACTCTTTTGGAACCGTGGCGCCACGAAGCGCTCGGACGTTGA
ATGGTATTGTTTTGCTTACCGCCGTGTACCCCCACACGTGTTGGCCAGTG
GCAAATCGACCAAGTCTCAAGGACAACCCCCACTTTCCTCCCGTCGCCTA
TCCATCACCTCGAGGTACAGCGGTTAACGATCAAGGTCCTCGGAAGGAAA
CAAACAAATTATGGGAATGAGCATGCCGCAATAAACCCCCACACAAACCC
GTTGCGAGAGCAACAGTTGTTGTTGTTGGCACTAATTTATTGATCCGATT
TTGGAACTCTTCCATACCGCCTGTCCCGCTCCGTCACCTCGGGGTGTTCA
ATGCGGCACTCATGCTAATCCGATTTGGATAGTATACATATATCTTCCAT
ACTCCTCTAACAGCAGTAGCCGACATCTCCTCGGGCCGCCGTGCTGTCAC
GCCGCCCGCGCGCGCGCCCCGCAGGGATGGGCCTCAAGCAGCTCCCCCCG
GTGACGTACATGAAGAAGATGTTCAAGCTGCTGAGCCACCACTACCCGAT
GCGCCTCGGGCACGTCCTGTTCACCAACGTGGGTCCCAGCGTGATGCTCT
GCTGGAAGGTGGTCTCGCCTCTCCTGCAGGCCAGAACCAAGGCCAAGATG
CACCTCATACCCTCCACGTGAGCATGCAGTTCGTGTCTCCGGTATAAGAG
GATACAATCAATCAGTTGGACCAGTACTGAGCGGAGACCGGAACGGTTTT
TAATATGAAGACAACAACAACAACAACAACAACAACAACAACAACAACAG
TACCTTGTAAGAGGGGGCTCCGGTATATGGGGGAAGTCGAAACCGGTTGG
ACACGTGCTCCACCCGATATATTATACATCTTGTTCCGTTACAAGCGGGG
CTCCGATATTTCAGGGTCGTTGAAACGGTTGTATAGTTGGGTATCCTCTT
ATCACGGTACAAGAGGGGGAGGATCGCGGGCCTTTTTTTTTTTTATGAAC
ACGTCACACCGAAGTAAGAGAGAGTGCTCAATCGCCTCCAACGGCTTCCC
AGCCCTGATCCTCTCCACCTGCTGTTGTCCGACTCCACTGCGCGCGAGCA
GGGCACTAGGCCAAACGGCCAAGTACATCCACCCGAGCCAACTCCTGTCC
TTCGCGGGAGGCAAGTCGCCATGGCAGTACGACCCGGCGGTATACTTCTC
CAGTGATGCAGCTAGTTTGTAGACAGCGGCGGGGGCGAGGGGGGGGTGTA
CCCATAGCCGGGCATGCCGTAGTCGTTAGACCATTGACCAAGCATCCCTT
CAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACAAGGCTCGCACAT
CACCAAGCGCGAAGCACCGTGAGGTATTCGGCGAGTTGCATGGAGGGTGC
GCTGCATCCTGTTAAGGGTGTTCGGCATCTTGTGTTTACTTCCTTGCATA
CGGGTTACAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:904000..908960-

>mRNA_E-siliculosus-1a_M_contig8.16107.1 ID=mRNA_E-siliculosus-1a_M_contig8.16107.1|Name=mRNA_E-siliculosus-1a_M_contig8.16107.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2508bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:904000..908960- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGTTTCAAGGACGCCATGGGCGCAATATCAAGCGTGATCATCATCGG
CGCTGCTTCAAACGCATGTAATGCTCACGTGGTGGGCAGCAGAAAACACG
CATCAGCAGCAGCAGAGGCCTGCTGCTGGAACTCGAAACGGTTGAGACCG
AACTGCCACCTCACGGGCAGCAGGCGATCGCTGTCGCTTGCAACAGACGA
GTTGCTCACCAGCAGATCACTCTTTTTGATACGAGGGGGAACGAGCTCAG
AACCATTCGATGAAAGCAACCCTCAGTCGCGGTGGTGGAGATCGCGGAAA
CGATGGGCCAAGCGGAAGGCAGCAGAGCTAGCGGCGAAGGAGGCGAAAGA
GAGCCGCAACCACGCTCACCCAAAACATGTCATCCTAAACCTGCTTCGAC
GACTGAAGCGCTGGATTGGCGTGGTGGTCGACTTCACGACGCTGAAGCGT
CTTCGCTTGCTGCGGCAAGCGAGAAGGATGGGTTTCAAGGACGCCATGGG
CGCAATATCAAGCGTGATCATCATCGGCGCTGCTTCAAACGCATGTAATG
CTCACGTGGTGGGCAGCAGAAAACACGCATCAGCAGCAGCAGAGGCCTGC
TGCTGGAACTCGAAACGGTTGAGACCGAACTGCCACCTCACGGGCAGCAG
GCGATCGCTGTCGCTTGCAACAGACGAGTTGCTCACCAGCAGATCACTCT
TTTTGATACGAGGGGGAACGAGCTCAGAACCATTCGATGAAAGCAACCCT
CAGTCGCGGTGGTGGAGATCGCGGAAACGATGGGCCAAGCGGAAGGCAGC
AGAGCTAGCGGCGAAGGAGGCGAAAGAGAGCCGCAACCACGCTCACCCAA
AACATGTCATCCTAAACCTGCTTCGACGACTGAAGCGCTGGATTGGCGTG
GTGGTCGACTTCACGACGCTGAAGCGTCTTCGCTTGCTGCGGCAAGCGAG
AAGGGGGTCGTGGCAGCACGGAGGACCAATCCCCGTCAGGTATCGAGAGG
TGCTGCAGGAGCTGAGGAACGAGGTTGCGGCGAAACCGGGCCTGGAGAGG
CGCGCCAAGAAGGTCCACCACGAGCTAGATACCGTTGCTCTTGGAAGGGG
TCGTGGCAGCACGGAGGACCAATCCCCGTCAGGTATCGAGAGGTGCTGCA
GGAGCTGAGGAACGAGGTTGCGGCGAAACCGGGCCTGGAGAGGCGCGCCA
AGAAGGTCCACCACGAGCTAGATACCGTTGCTCTTGGAAGGTTTTTGGAG
GCGGCGTTTTGGTCGTTGGAGCACGACGGCAAGCGGGTGAGCGACTTCAT
CGAGGAGTCCATCGCCTGGAGGGAAAAGATCGGGGCAGATCGCCTCCGAA
AGGAGGACGTAGTCGACCAAGGATGCCGTGGGGCCATCATTGTGAAGGGC
CACGATCTCAGCAGGTTTTTGGAGGCGGCGTTTTGGTCGTTGGAGCACGA
CGGCAAGCGGGTGAGCGACTTCATCGAGGAGTCCATCGCCTGGAGGGAAA
AGATCGGGGCAGATCGCCTCCGAAAGGAGGACGTAGTCGACCAAGGATGC
CGTGGGGCCATCATTGTGAAGGGCCACGATCTCAGCAGGCGACCGGTGGT
GTACTTTAGACCAGCCCTTGACGGAAGAATGGAGGGAGACGGCAACTCTA
AGCTGATGATTTACAACCTGGAGAGAGCGATTCGGCTCATGCCAAGAAAC
AGCTGGCAATATACCATCGTCATCGACTGTGAAGGCGACCGGTGGTGTAC
TTTAGACCAGCCCTTGACGGAAGAATGGAGGGAGACGGCAACTCTAAGCT
GATGATTTACAACCTGGAGAGAGCGATTCGGCTCATGCCAAGAAACAGCT
GGCAATATACCATCGTCATCGACTGTGAAGGGATGGGCCTCAAGCAGCTC
CCCCCGGTGACGTACATGAAGAAGATGTTCAAGCTGCTGAGCCACCACTA
CCCGATGCGCCTCGGGCACGTCCTGTTCACCAACGTGGGTCCCAGCGTGA
TGCTCTGCTGGAAGGTGGTCTCGCCTCTCCTGCAGGCCAGAACCAAGGCC
AAGATGCACCTCATACCCTCCACGGATGGGCCTCAAGCAGCTCCCCCCGG
TGACGTACATGAAGAAGATGTTCAAGCTGCTGAGCCACCACTACCCGATG
CGCCTCGGGCACGTCCTGTTCACCAACGTGGGTCCCAGCGTGATGCTCTG
CTGGAAGGTGGTCTCGCCTCTCCTGCAGGCCAGAACCAAGGCCAAGATGC
ACCTCATACCCTCCACGGCACTAGGCCAAACGGCCAAGTACATCCACCCG
AGCCAACTCCTGTCCTTCGCGGGAGGCAAGTCGCCATGGCAGTACGACCC
GGCGGTATACTTCTCCAGTGATGCAGCTAGTTTGTAGGGCACTAGGCCAA
ACGGCCAAGTACATCCACCCGAGCCAACTCCTGTCCTTCGCGGGAGGCAA
GTCGCCATGGCAGTACGACCCGGCGGTATACTTCTCCAGTGATGCAGCTA
GTTTGTAG
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