mRNA_E-siliculosus-1a_M_contig8.16100.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16100.1 vs. uniprot
Match: D8LQH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH9_ECTSI) HSP 1 Score: 728 bits (1880), Expect = 1.170e-251 Identity = 490/581 (84.34%), Postives = 502/581 (86.40%), Query Frame = 1
Query: 280 MAELMAEAHEKRLQAMEAVKKEVQRGYEEQIADLQSKLAALPSPADADKGAAVATAVRAEEPVLVGVGQGASVGSAGGAAQHPSYAARSARPGWEARWGAEEPARASPAVTAADVISMESRVAAASAPGSGAVHPAYAARAQRPGWEERWGTEESVRKTVTAASTSSSAEVAPQAQGKAAAPADVHPAYAGKPGGGGRSGADSARRRPGWEERWGSEEQARKTMTVAGTGSTSAAVEVATQALGTPSAPADVHPAYAGKPEGGERPGWAERWGSEEPARMTAATATPTSTGPAASAQAQSTAASPPADVHPAYAARAQRPGWEARWGSEEPARMTAATSTAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEAGAIAVAGAAAGFXXXXXXXXXXXXXXXXXXXXXXXXXXDVPLADEFLPADVAELRSMVVSNRRSFQDYLLKSLEASNELKQSNAKLESELSRSKARLAAEEQLRESLQESFLDYMSRSGDAGAAGKAQVAKLEKDVLTLAAEADELRRFTQEYMVKASSDKQNALEEAAATARAQSAERIAALQAQVLELQAG 2022
MAE MA+AHE RLQAMEAVKKEVQRGYEEQIADLQSKLAALP PADADKGAA ATA RAEEPVLVGVGQGAS+G AGGAAQHPSYAARSARPGWEARWGAEEPARASPAVTAADV SMESRVAAASAPG GAVHPAYAARAQRPGWEERWG EE RKT+ AASTS+SAEV PQAQGKAAAPADVHPAYA + +RPGWEERWG+EE ARKTMTVAG GSTSA EVATQALGTP+APADVHPAYA + + RPGW ERWGSEEPARMTAATA STAASPPADVHPAYAARAQRPGWEARWGSEEPARM AATSTAGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGA+AGAIAVAGAAAGF X XXXXXXXXXXXXXXXXX D PLADEFL DVAELRSMVVSNRRSFQDYLLKSL ASNELKQSNA LE+ELSRSK RLAAEEQLRESLQESFL YMSRSGDAGAAGKAQVAKLEKDVLTLAAEADELRRFTQEYMVKASSDKQNALEEAAATARAQSAERIAALQAQVLELQAG
Sbjct: 1 MAEFMAKAHENRLQAMEAVKKEVQRGYEEQIADLQSKLAALPPPADADKGAAAATAFRAEEPVLVGVGQGASMGFAGGAAQHPSYAARSARPGWEARWGAEEPARASPAVTAADVSSMESRVAAASAPGGGAVHPAYAARAQRPGWEERWGMEEPARKTMAAASTSASAEVVPQAQGKAAAPADVHPAYAART------------QRPGWEERWGAEEPARKTMTVAGAGSTSAPAEVATQALGTPAAPADVHPAYAARTQ---RPGWEERWGSEEPARMTAATAXXXXXXXXXXXXXXSTAASPPADVHPAYAARAQRPGWEARWGSEEPARMIAATSTAGAPTASGKTALPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGADAGAIAVAGAAAGFATAGXLXXXXXXXXXXXXXXXXXGAGDDPLADEFLTDDVAELRSMVVSNRRSFQDYLLKSLWASNELKQSNAVLEAELSRSKVRLAAEEQLRESLQESFLGYMSRSGDAGAAGKAQVAKLEKDVLTLAAEADELRRFTQEYMVKASSDKQNALEEAAATARAQSAERIAALQAQVLELQAG 566
BLAST of mRNA_E-siliculosus-1a_M_contig8.16100.1 vs. uniprot
Match: A0A6H5KQ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ96_9PHAE) HSP 1 Score: 269 bits (687), Expect = 1.940e-79 Identity = 202/298 (67.79%), Postives = 209/298 (70.13%), Query Frame = 1
Query: 1132 ATPTSTGPAASAQAQSTAASPPA-DVHPAYAARAQRPGWEARWGSEEPARMTAATSTAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEAGAIAVAGAAAGFXXXXXXXXXXXXXXXXXXXXXXXXXXDVPLADEFLPADVAELRSMVVSNRRSFQDYLLKSLEASNELKQSNAKLESELSRSKARLAAEEQLRESLQESFLDYMSRSGDAGAAGKAQVAKLEKDVLTLAAEADELRRFTQEYMVKASSDKQNALEEAAATARAQSAERIAALQAQVLELQAG 2022
AT T+ PAAS + ASP A D+HPAYAAR RPGWEARWGSEE R+ AGAEAGAIAV XXXXXXXXXXXXX D PLADEFLP DVAELRSMVVSNRRSFQDYLLKSLEASNELKQSNAKLE ELSR+KARLAAEEQLRESLQ+SFLDYMSRSGDAGAAGKAQVAKLEKDVL LAAEADELRRFTQEYMVKASSDKQNAL+EAAATARAQSA RIAALQAQVLELQAG
Sbjct: 4 ATCTAVSPAASGK----TASPDAEDLHPAYAARLGRPGWEARWGSEEKERV-------------------------------------------------AGAEAGAIAVXXXXXXXXXXXXXXXXXXXXADEASAGSGGAGDD-PLADEFLPDDVAELRSMVVSNRRSFQDYLLKSLEASNELKQSNAKLEVELSRAKARLAAEEQLRESLQKSFLDYMSRSGDAGAAGKAQVAKLEKDVLALAAEADELRRFTQEYMVKASSDKQNALQEAAATARAQSAGRIAALQAQVLELQAG 247
BLAST of mRNA_E-siliculosus-1a_M_contig8.16100.1 vs. uniprot
Match: A0A835Z6M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.240e-10 Identity = 59/162 (36.42%), Postives = 80/162 (49.38%), Query Frame = 1
Query: 280 MAELMAEAHEKRLQAMEAVKKEVQRGYEEQIADLQSKLAALPSPADADKGAAVATAVRAEEPVLVGVGQGASVGSAGGAAQHPSYAARSARPGWEARWGAEEPARAS-PAVTAADVISMESRVAAASAPGSGAVHPAYAARAQRPGWEERWGTEESVRKTVT 762
MA+L+ A + RL +M+A++KE+ + Q A ++ ++AAL A GAA A A PV + H +YAAR R GWE RWG +E AR S TA + + VHPAY AR QR GWE+RWG+ E R + T
Sbjct: 1 MADLVLSAQQSRLNSMDALRKELDSAFNAQAASVKDEIAALKP--QAVNGAAAVPAHTATVPVP---------------SVHAAYAARLTRKGWEDRWGDDEVARVSGDGATALQASAAPAAXXXXXXXXXXXVHPAYLARTQRAGWEDRWGSSEVQRTSGT 145 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16100.1 >prot_E-siliculosus-1a_M_contig8.16100.1 ID=prot_E-siliculosus-1a_M_contig8.16100.1|Name=mRNA_E-siliculosus-1a_M_contig8.16100.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=666bp MGSLRATDLVLAAAVASLCCAVNGFTPPTAVVVGNNAACFRTAGGTSTAAback to top mRNA from alignment at E-siliculosus-1a_M_contig8:819512..827301- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16100.1 ID=mRNA_E-siliculosus-1a_M_contig8.16100.1|Name=mRNA_E-siliculosus-1a_M_contig8.16100.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7790bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:819512..827301- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:819512..827301- >mRNA_E-siliculosus-1a_M_contig8.16100.1 ID=mRNA_E-siliculosus-1a_M_contig8.16100.1|Name=mRNA_E-siliculosus-1a_M_contig8.16100.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3996bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:819512..827301- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |