mRNA_E-siliculosus-1a_M_contig8.16099.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI) HSP 1 Score: 731 bits (1887), Expect = 1.920e-261 Identity = 380/407 (93.37%), Postives = 386/407 (94.84%), Query Frame = 3
Query: 42 TLVGTRAFNILPQGKSPSRFQPVPPAXXXXXXXXXXXXXXXTGD--STHTKRRPRPGTLSASNAYGHASSRTADHDGDVPASLPRIDVTGLSRAQVAHLVDFSRSCILTGVLSSPDCESWCDGLLQDLGEATCAFQIRDNESGHSEEFEASLMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDEFQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALAPRDQIKEVLKVALVARHGREKGLEAFDGLDDP 1256
TLV TRAFNILPQGKSP+RFQ P XXXXXXXXXXXXXXX S+H KRRPRPGTLSAS+A GHASSRT DHDGDVPASLPRIDVTGLSRAQVA LVDFSR CILTGVLSSPDCESWCDGLLQDLGE TCAFQIRDNESG SE FEASLMDFV+ LQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQ+LLGTDEFQLFPPSVRPQ+LCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALA RDQIKEVLKVALVARHG EKGLEAFDGLDDP
Sbjct: 2 TLVETRAFNILPQGKSPTRFQACAPXXXXXXXXXXXXXXXXXXAVFSSHAKRRPRPGTLSASSADGHASSRTVDHDGDVPASLPRIDVTGLSRAQVADLVDFSRPCILTGVLSSPDCESWCDGLLQDLGEETCAFQIRDNESGRSEVFEASLMDFVKRLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQDLLGTDEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGLDDP 408
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.870e-55 Identity = 122/339 (35.99%), Postives = 172/339 (50.74%), Query Frame = 3
Query: 387 ESWCDGLLQDLGEATCAFQIRDNESGHSEEFEASLMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDEFQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAF--GSHNVSAGWQSNVDLYQHGAA----TASWPTAG---------------------------------------EGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALAPRD----QIKEVLKVALVARHGREKGLEAFDGLDDP 1256
E+W + + +D+ +G + + SL FV L +S H S+YLLDE LL + P L + L P+ G D F LFP ++P+ C ++GG G+RS LH+DPMEW GWN LLEG KLWTFLPP +++LG+ R+ + G +N+SAGWQS+VDLY A + WP+A +G+ + ++ +Q G+LV IPP WHQ YHLEPS+AVA QY+ + +V H+ WC AS S F +A + I+E+L +AL A+HG+ KG E F L P
Sbjct: 117 EAWTAAFFEAFAQERVTCHTKDSTTGETTALDLSLSHFVD-LAFKSNHQHSYYLLDESLLS---SAPSLASSLTLPEAWFGKDHFGLFPAELQPKQPCLVMGGAGSRSSLHADPMEWTGWNYLLEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLYMEKIAGKGRSGDWPSAAALGVMPSIARDYALGLVEGSCNTGHPFMPSNAMVLDALVDGRSLEDGRIAVLQREGDLVHIPPGWWHQTYHLEPSVAVAGQYLSSQNFQKVAAHVCKWCDASIGDA-GSHFQQVADTEGYETAIQELLLLALRAQHGQAKGDELFSSLTFP 450
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA) HSP 1 Score: 172 bits (435), Expect = 4.580e-44 Identity = 124/372 (33.33%), Postives = 175/372 (47.04%), Query Frame = 3
Query: 285 PRIDVTGLSRAQVAHLVDFSRSCILTGVLSS-PDC-----ESWCDGLLQDLGEATCAFQIRDNES-GHSEEFEASLMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGT-DEFQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQS-NVDLYQ------HGAATASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASD--------------------------------DVLLSSRFDALAPRDQ----IKEVLKVALVARHGREKGLEAFDGL 1247
P +D L Q C+LT P+ +++ D ++ + Q++ N + +L V G+ +STH E+WYLL+E LL+ Q R ++ P +L G D F LFP +RP+ C I+GG GARSFLH DP EW G N LLEGRK+WTF PP + + LG R+ P A+ VSAGW+S + DLY GA T P E +Q V QE GELV+IPP HQVYHL+P L++A Q + V HML W S +++ + + R Q I++ L+ A++ RHG E+GL+A++ L
Sbjct: 34 PCLDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNR-KIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCS---ADLGLKRVLPEAW-EGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALV---QEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKALRQAMILRHGPERGLQAYERL 397
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: A0A8J2SEA1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA1_9STRA) HSP 1 Score: 144 bits (364), Expect = 7.060e-35 Identity = 108/321 (33.64%), Postives = 147/321 (45.79%), Query Frame = 3
Query: 288 RIDVTGLSRAQVAHLVDFSRSCILTGVLSSPDCESWCDGLLQDLGEATCAFQIRDNESGHSEEFEASLMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDE---FQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLY--QHGAATASWPTAGEGQE-------------------VMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALAPRDQIK 1178
RID + A +D + + G LS C++W L++ G+A QI + F+A L +F STH +L DE LL+ L A PQ + E FP RP C + G GARS LH DP +W G ++ LEG K+W FL + D D L Y+L AFG SAG QS++DLY Q G WP A + ++ V + +Q AG++V++PP+ WHQ Y LEPS AVASQ+ R VF HM+ DD +L A PRD ++
Sbjct: 23 RIDAKDAPAIRAA--LDSGQPFVAAGALSPEACDAWTGNLMEGFGDAIVTQQIA------GDPFDAPLAEFFYDAL-ASTHETPHFLFDEALLE-----GNLRAAAIAPQRAIFEGEESWLDAFPAERRPADACVVCAGAGARSPLHRDPYDWTGTSLCLEGSKVWRFLLDVDDAD--LEAYKLPSEAFGDD--SAGTQSDIDLYCVQEG----DWPDAADFEDDRDLVKAKAGPENFTPSTQVPGRFCTALQFAGDVVIVPPKSWHQTYALEPSCAVASQFCGRRDAPTVFEHMIRHRSRDDDRVLDLARTA-PPRDAVR 320
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: F0YQV8_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQV8_AURAN) HSP 1 Score: 139 bits (350), Expect = 2.640e-33 Identity = 102/280 (36.43%), Postives = 129/280 (46.07%), Query Frame = 3
Query: 285 PRIDVTGLSRAQVAHLVDFSRSCILTGVLSSPDCESWCDGLLQDLGEATCAFQIRDNESGHSEEFEASLMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDE---FQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHG---------------AATASWPTAGE-----GQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVAS 1055
P V A +A +D I LS+ DCE+W D L+ LG+A Q R E E L F + S+H +L DE LLD +L PQ + E F FP S RP+ C + G GARS LH DP +W G ++ +EG K+W F +AD D LG Y LA AFG SAG QS+ DLY A A+W A V+ +Q AG++V++PPR WHQ Y LEPSLAVAS
Sbjct: 30 PAARVDARDHAAIAAALDAGEPFIAAEALSARDCEAWTDALMMRLGDAPVRRQRR------GEALEMPLGAFFEDALT-SSHALPSFLFDEFLLD---GDDDLRGAAVGPQRAIFGGERSWFDHFPESRRPRDGCVVGAGAGARSPLHRDPYDWTGTSLCVEGSKVWRFALDVADAD--LGAYELASEAFGGD--SAGTQSDADLYARRVGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKTARFVTALQRAGDVVVVPPRAWHQTYALEPSLAVAS 295
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: A0A830HZM1_9CHLO (JmjC domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HZM1_9CHLO) HSP 1 Score: 135 bits (340), Expect = 1.350e-31 Identity = 86/253 (33.99%), Postives = 125/253 (49.41%), Query Frame = 3
Query: 390 SWCDGLLQDLGEATCAFQIRDNESGHSEEFEASLMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDEFQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVS--AGWQSNVDLYQHGAATASWPTAGEGQE---------VMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCG 1115
SW L+ +R+N H+ F A M+ + + S H+ S +++E LL A + A L P+ + ++ PPS+RP C + GG G+RS LH+D W+GWN L+EG K WTF+P A + R+ P A+ N S AGWQ+ VD Y +A + TA G + + H ++ Q GELV+IPP +HQVYH ++A+A QY D V RH+ W G
Sbjct: 52 SWLSDLVASAENTHVEVLLREN--NHTSSFVAPFMEALGEIAHASDHDSSVLIVEEDLLANSPAHVQDAARL--PKEICAENKLDQLPPSLRPG-TCVLFGGAGSRSSLHADAFGWVGWNYLVEGEKTWTFIPHDA-FPADEVCVRVPPAAWAGDNTSIGAGWQTAVDAYAERSADGTSFTARGGTQEHARAVEEAIQNHGITVHQSEGELVIIPPECFHQVYHHTATVAIAGQYADNTNWPIVCRHVGRWVG 298
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: A0A7S1WCY4_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WCY4_ALECA) HSP 1 Score: 135 bits (340), Expect = 2.880e-31 Identity = 105/324 (32.41%), Postives = 153/324 (47.22%), Query Frame = 3
Query: 324 AHLVDFSRSCILTGVLSSP---DCESWCDGLLQDLGEATCAFQIRDNESGHSEEFEASLMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDEFQL--FPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSH--NVSAGWQSNVDLYQ------------HGAATASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCG--ASDDVLLSSRFDALAPRDQIKEVLKVALVARHGREKGLE 1232
A +D + +LT L S D +W +G+L G+ A+ R + + + A L Q L D S+H +DEHLL+ L A+L + + D FQ F +R +C GG G RS H+D ++W GWNVLL G KLW + + D++ R+ P +H ++AGW+S D Y H P A G + Q AGE+V+ P WHQVYH + ++A+ASQY + R+ R H+L+WCG A+ LL +R + AP QI E L++AL R +G E
Sbjct: 8 AERLDGRQPVLLTHALESRGRWDPRAWEEGVLGHYGQRVVAYSTRGRLT--TCQSYAPLSRAWQ-LVDGSSHARPVSYMDEHLLE----GEVLDAVLSRVPAFMRKDYFQEEGFKRHIRIPPVCFSRGGRGTRSDFHADFLDWTGWNVLLRGDKLWRWWRRRPEGDAAFAGVRV-PRLKEAHPEGLAAGWESRADAYAEVHGENPGPGRPHSFVPRPSPDAAPGAAWPEPDFETTQRAGEMVVFPGSWWHQVYHYDETVALASQYCNDRILARCLAHVLEWCGVGAAAVRLLLARLGSEAPEVQIDEALRLALATRLQPPEGAE 323
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.270e-31 Identity = 80/176 (45.45%), Postives = 99/176 (56.25%), Query Frame = 3
Query: 756 LEGRKLWTFLPPLADLDSSLGTYRLAPNAFG-SHNVSAGWQSNVDLYQ-------HGAATASWPTA---GEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQ-YMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALAPRDQIKEVLKVALVARHGREKGLEAFDGL 1247
+EG KLWTFLPP + L YRL PNA+G S+NVSAGWQS VDLY+ HG+ A G ++V VQ GE VLIPPR WHQV HL PS+AVASQ Y R R R+F+H+ DWCG + P+ Q++ VL+ L A+HG + G F L
Sbjct: 1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAA-PPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKEL 173
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: A0A812KFH2_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KFH2_9DINO) HSP 1 Score: 127 bits (319), Expect = 7.220e-29 Identity = 80/227 (35.24%), Postives = 107/227 (47.14%), Query Frame = 3
Query: 489 LMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDEFQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHN-------VSAGWQSNVDLYQHGAATASWPTAGE--------GQEVMQHAVSG----VQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWC 1112
L DFV S H + L+DE+++ +LLE L D F FP +RP LC +VGG GARS LH DP+ W GWN LL+GRKLW F P D+ + +R FG + +GW+S+VDL+ + A+ P GQ S VQE GE ++ P WHQ YHL P+ A Q ++ RV H++ WC
Sbjct: 72 LCDFVPN----SYHEDPVLLMDENVVSTTSLA---NSLLEAAPPFLREDLFCEFPRMLRPAPLCLVVGGRGARSDLHIDPLSWTGWNCLLQGRKLWRFFP---DIPQNAEAFRPMSRPFGIRKGGAEVCTIGSGWRSDVDLFANRTHPAAEPLCDSFGSLSPDLGQFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC 288
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Match: A0A812XB14_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XB14_9DINO) HSP 1 Score: 130 bits (327), Expect = 2.960e-28 Identity = 80/227 (35.24%), Postives = 107/227 (47.14%), Query Frame = 3
Query: 489 LMDFVQGLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQNLLGTDEFQLFPPSVRPQHLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHN-------VSAGWQSNVDLYQHGAATASWPTAGE------GQEVMQHA------VSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWC 1112
L DFV S H + L+DE+++ +LLE L D F FP +RP LC +VGG GARS LH DP+ W GWN LL+GRKLW F P D+ +R A FG + +GW+S+VDL+ + TA+ P H + VQE GE ++ P WHQ YHL P+ A Q ++ RV H++ WC
Sbjct: 72 LCDFVPN----SCHEDPVLLMDENVVSTTSLA---NSLLEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFP---DIPQHAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDLAKFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC 288 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16099.1 >prot_E-siliculosus-1a_M_contig8.16099.1 ID=prot_E-siliculosus-1a_M_contig8.16099.1|Name=mRNA_E-siliculosus-1a_M_contig8.16099.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=419bp MLWLGVGLPLTTLVGTRAFNILPQGKSPSRFQPVPPAAAAAAVDSGARRRback to top mRNA from alignment at E-siliculosus-1a_M_contig8:816057..819227- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16099.1 ID=mRNA_E-siliculosus-1a_M_contig8.16099.1|Name=mRNA_E-siliculosus-1a_M_contig8.16099.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3171bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:816057..819227- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:816057..819227- >mRNA_E-siliculosus-1a_M_contig8.16099.1 ID=mRNA_E-siliculosus-1a_M_contig8.16099.1|Name=mRNA_E-siliculosus-1a_M_contig8.16099.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2514bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:816057..819227- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |