|
|
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16087.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI) HSP 1 Score: 551 bits (1419), Expect = 2.590e-193 Identity = 292/306 (95.42%), Postives = 297/306 (97.06%), Query Frame = 3
Query: 378 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFETEQEADDEGDGISEGEAGTMRETRGSTSETADARATSVERTSTQDGRRAGTGTAEGKARKKQNSTAGKEVNVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFQEMKKCMIYHDLY 1295
MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEA AVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPP+LAH R+FPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKT+ETEQEADDEGDGISEGEAGT+RETRGSTSETADA ATSVERTSTQDG RAGTG+AEGKA KKQN AGKE NVAAVGNAAEAGRKRQADRDLIEEQLEKEAL IFQEMKKCMIYHDLY
Sbjct: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEADDEGDGISEGEAGTIRETRGSTSETADASATSVERTSTQDGTRAGTGSAEGKAGKKQNPAAGKEGNVAAVGNAAEAGRKRQADRDLIEEQLEKEALVIFQEMKKCMIYHDLY 306
BLAST of mRNA_E-siliculosus-1a_M_contig8.16087.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI) HSP 1 Score: 226 bits (576), Expect = 2.530e-64 Identity = 119/233 (51.07%), Postives = 149/233 (63.95%), Query Frame = 3
Query: 249 GPMVAVYLDDTSVDTLRAHFPEARDGQLRKVVLQYGPSASEREMYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 947
GPMVAVYLDD+S++ L+ +P + G+LRKVV++Y PS +R +Y F G A V VTG+A S R ALVASVS AG VEP SLS +D++P + G GPL S VLIEQ K+ GA E+ W+G LPPL AH R FPSE G+Y +L EP+T+ G+ICRADWV+ + VCR T GG KRE+ W P CSIC SPC+ I ++F A S R E T ET
Sbjct: 61 GPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDV------------GGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSET 281
BLAST of mRNA_E-siliculosus-1a_M_contig8.16087.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE) HSP 1 Score: 218 bits (554), Expect = 3.520e-61 Identity = 116/239 (48.54%), Postives = 150/239 (62.76%), Query Frame = 3
Query: 240 PPI---GPMVAVYLDDTSVDTLRAHFPEARDGQLRKVVLQYGPSASEREMYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 947
PP+ GPMVAVYLDD+S++ L+ +P G+LRKVV++Y PS +R +Y F A V +TG+ASS R ALVASVS AG VEP SLS +D++P + G GPL S VLIEQ K+ GA E+ W+G LP L AH R F SE G+Y +L EP+T+ G+ICRADWV+G + VCR T GG KRE+ W P C+IC SPC+ I++ F A + R +E ET
Sbjct: 51 PPLQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEV------------GGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSET 277
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 1278 |
| Model size | 1618 |
| Exons | 5 |
| Ec32 ortholog | Ec-10_005940.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | mitochondrion |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936169.068951-UTR-E-siliculosus-1a_M_contig8:632463..632783 | 1622936169.068951-UTR-E-siliculosus-1a_M_contig8:632463..632783 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 632464..632783 - |
| 1696250959.6969101-UTR-E-siliculosus-1a_M_contig8:632463..632783 | 1696250959.6969101-UTR-E-siliculosus-1a_M_contig8:632463..632783 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 632464..632783 - |
| 1622936169.1547935-UTR-E-siliculosus-1a_M_contig8:635933..635953 | 1622936169.1547935-UTR-E-siliculosus-1a_M_contig8:635933..635953 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 635934..635953 - |
| 1696250959.7745442-UTR-E-siliculosus-1a_M_contig8:635933..635953 | 1696250959.7745442-UTR-E-siliculosus-1a_M_contig8:635933..635953 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 635934..635953 - |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16087.1 >prot_E-siliculosus-1a_M_contig8.16087.1 ID=prot_E-siliculosus-1a_M_contig8.16087.1|Name=mRNA_E-siliculosus-1a_M_contig8.16087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=426bp
MYVFRTLRSKSVTPLTLAAAGFVASSARFERQTEAEPISIDPQASQQPKQ DGEQGKSASAGGGESGKEQAMFPPPIGPMVAVYLDDTSVDTLRAHFPEAR DGQLRKVVLQYGPSASEREMYRHLFSGKAEVTVTGDASSFARRALVASVS HAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKK AGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVD GASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRR DEYLKTFETEQEADDEGDGISEGEAGTMRETRGSTSETADARATSVERTS TQDGRRAGTGTAEGKARKKQNSTAGKEVNVAAVGNAAEAGRKRQADRDLI EEQLEKEALAIFQEMKKCMIYHDLY* back to topmRNA from alignment at E-siliculosus-1a_M_contig8:632464..635953- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig8.16087.1 ID=mRNA_E-siliculosus-1a_M_contig8.16087.1|Name=mRNA_E-siliculosus-1a_M_contig8.16087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3490bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:632464..635953- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) GTGCAGAGTCAACGGCGAGGATGTATGTCTTCAGAACTCTCCGTTCCAAG
AGTGTGACTCCTCTGACGTTGGCTGCTGCAGGGTTTGTGGCTTCCTCGGC
AAGATTCGAGAGGTGAGGTCTCAACAAGTGTTGTATTTGAATCCCTTCCG
ATCCATTCAACTCCCGTCCGCTGTCCGCTTGTGGGGCTGTTCGCCGGCGT
TCCTTTTACGGCAACAGACCTGCGCAGTCTCTCTCTATGCCGATGATTTA
CTACTGTTCATGCCGTCGTATCGATTCCCGCATCTATCGTGAGGTTCATC
GATACGGCCCGAACAAAAGGGCAACCACTTGCTCTCTCTCTGAGGTCTGC
GTATTTTGGGTGAATAACATTTGCATTGTAGACTGATGTGTTCCCTGCAA
ACCGCTGTGAAACGGTTTACGACACACACCAGCGCCGGCCAACTCATAAT
AACCATCCCACCAGAACATGCATGCCCCTGAACGGGGTATTACCTCGAGC
GGGTGCTCCTCTGAGTGTTTGCATGCATATAATTTGTACGAGATCGAGGG
TCGATTTATTCAGGCACTACAACAGCAGACGGCACCAAGTGTATGCACAT
TTTCCGGTAATTTTTGGGTGGTACACTATCTGACCACACCACACGGTACT
CCCCACACGGTATCCCGCCGCCACGGTAATCACGGTATTGGCTCAGCGTA
TGGCAATGAGATAACACGAAGATACTGTTGATTGCTCGCAATATTCACAT
TTCAAAACCACGAATCCCAGATAAGATTCCTTTGCGACAGCAGAATCTTG
TAACGTATGGTAGTATACAACGCCCCCTACGGAAGAACGTGTTTCAAGGT
TAGAGGGCACAACTTGTTTTATCCCGACCAGCCCACTTTTCAGCTTCTCG
GGTCGTACTCATAACCCTGTTCTGTACCACACATGTACCAGTGCTGCCAT
CGTGCGTTACATAACCCTCGAGATCCCTCCCTCGGCGATATCGTTCACTA
GACAAACAGAGGCAGAACCCATCAGCATAGATCCTCAAGCTTCTCAGCAG
CCGAAACAAGATGGCGAGCAGGGGAAGTCCGCGTCTGCTGGGGGCGGCGA
GAGCGGAAAGGAGCAGGCCATGTTCCCACCACCCATCGGGCCAATGGTAG
CGGTATATCTGGACGATACCTCGGTGGATACGTTGAGAGCCCATTTCCCC
GAAGCTCGTGACGGGCAGTTGAGGAAGGTCGTTCTTCAGTACGGCCCTTC
GGCGTCCGAGCGGGAAATGTACCGGCACCTGTTCAGCGGCAAGGCCGAAG
TCACGGTGAGGAGAGTCTCGTCGAGTTTTGTTACGTGCTGACTGTGATCT
GGGTGCGTTGTGAGGGTGTTGTGCAAACAACAACAATTTTGGTGTGTTAC
TGTGGCGTCGGGACTATGTAGTAGCCTTGTGCATCCTGTAGCATGTCTAG
TGACTTGGGCAGCCCTCGGTACCATAGAGGGGGACGGCAGCCGTCCCCGA
AGGAAGCTCGAATGCCGTCGAAAAACGAAGAACTGCTGGTGCGCTATGCT
TTCTCTCGACACAACGCGGTATGAGTACACGACATCCTTGATGAAACTGC
CGAGCCGTCGAACTAAGGCGAAGCTCTTTTTGCTCGTCGTTCGACAACGC
TTGCTCTGGTTCTCCCCGTGACAGGTGACGGGGGACGCCTCAAGCTTTGC
GCGGCGCGCTCTGGTTGCCTCCGTATCTCACGCTGGAAAGATTGTCGAAC
CGGCGTCTCTATCGGCGACGATCGATATCTCGCCTCCTGCCATCACAGAC
CCTGAGGCACCAGCGGTGGCGGAAAACGATGGTCCGGGACCCCTGGCCAG
CGCCGTATTGATTGAACAGGCCAAAAAGGCCGGGGCGACAAAGGAGGTAT
GGTCTGGTGCATGGGTAGATGCGAGGGGAGGAGTGTACTATATGTTCGAC
AGGGAAGATGGTTGATGCGTTTGCAGCAGTTTGGTTTCCGCGGTGTGTTT
GGTGTTTACTCCTTTCCTTTCCGTCTCTGCATGCGTGCCTGTTTGCGAAT
TGCTTGCCTTTTTCTCCTTCGTTGTTATCATGCATTTTTCAATTGAGGTC
GGGCCTCAACATACTCCTCATCCACCATACTTTCGCCGTCCCGACCGTGT
CCGATTGATCAGGAAATGTGGGAGGGCACACTTCCACCCTTGTTGGCCCA
CCACCGTCAATTCCCAAGTGAACCAGGAGCGTACGTAAGGCTTAAGGAAC
CCATTACCGTCTACGGCACTATTTGCCGCGCCGATTGGGTCGACGGCGCG
TCCAATGTTTGCCGAGATACATTGGAGGGAGGGCAGAAGAGAGAGGAAGA
TTGGGAACCTTCGGACTGTTCCATCTGCGCGTTTTTCTCCGTCAGCCCGT
GCAAGGGGATTTTCGAAAGGTAAGGCACCCCGACGACCCTGTCCCAGAAT
CCCAGTGTCTCCTCGTAAGACCTCGTTAGTGTTCAAGACCCATCGCTCCG
ATTGGCGCATGTCCTGCAGATACGACAGGGGCGAGTTCGCTCAAAGGCTC
TCATGTTCTCGAGCAAGCTACTCTGCCAGAGGCTCAATGTGATACGCCGC
GTACGGCTAGCACCAGGTCAACATGTTTTCTGCTGGGCACGGCACTCTTG
CACCTTGCAAGAGTGCTCATGTAGATGGCCATACGATGTCGAGTATAGTA
CGACTACAACAGTAGGGAGCAACACGCTGTTTTACTTCTCCCGGCGTTTT
TTTACGGTAAAACACAGGTTTGTAGCAACGAGCAAACGTCGGGACGAGTA
CCTCAAAACGTTCGAAACAGAGCAAGAAGCAGATGACGAGGGAGACGGAA
TTTCCGAGGGAGAGGCAGGCACTATGCGAGAAACCCGCGGAAGTACCAGC
GAGACGGCGGACGCAAGAGCAACCTCGGTGGAACGAACAAGTACACAAGA
CGGTAGGCGTGCCGGCACTGGCACGGCGGAGGGGAAGGCAAGAAAGAAAC
AAAATTCGACCGCTGGAAAGGAGGTAAACGTTGCGGCGGTGGGAAACGCT
GCTGAAGCAGGGCGGAAGCGGCAGGCAGACCGAGACCTCATCGAAGAGCA
GCTGGAGAAGGAAGCTTTGGCCATTTTCCAAGAAATGAAGAAGTGCATGA
TCTACCATGACCTGTACTAATCGAATCAATCAAGTGCTAGGCTTGGACCT
GCGATGTCCTTACTACAGGGAGATTCGGTGCTTCTAGTCTTCGACAGCAT
GTTATAGATCGCCGAAACAACTGTTGAAGTAGATACATGTTGGGTTGGCA
AGGACTGCTGTATAGATAGGATTTGATGCTTGTGTCACGGTATCGATGGT
AGGGTGACACGGTATCGATGGTAGGGTGACGCTTGCGGCGAAGATGGACC
ACCACGGTCATCTGTAGTCGCTCGTTGGTTGGGTCATGTTCGGTCGTGGC
CTGATAGCGGGCTGTAGGTATCATTAGCCTCGGATTTCCA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:632464..635953- >mRNA_E-siliculosus-1a_M_contig8.16087.1 ID=mRNA_E-siliculosus-1a_M_contig8.16087.1|Name=mRNA_E-siliculosus-1a_M_contig8.16087.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2556bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:632464..635953- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGTATGTCTTCAGAACTCTCCGTTCCAAGAGTGTGACTCCTCTGACGTT GGCTGCTGCAGGGTTTGTGGCTTCCTCGGCAAGATTCGAGAGATGTATGT CTTCAGAACTCTCCGTTCCAAGAGTGTGACTCCTCTGACGTTGGCTGCTG CAGGGTTTGTGGCTTCCTCGGCAAGATTCGAGAGACAAACAGAGGCAGAA CCCATCAGCATAGATCCTCAAGCTTCTCAGCAGCCGAAACAAGATGGCGA GCAGGGGAAGTCCGCGTCTGCTGGGGGCGGCGAGAGCGGAAAGGAGCAGG CCATGTTCCCACCACCCATCGGGCCAATGGTAGCGGTATATCTGGACGAT ACCTCGGTGGATACGTTGAGAGCCCATTTCCCCGAAGCTCGTGACGGGCA GTTGAGGAAGGTCGTTCTTCAGTACGGCCCTTCGGCGTCCGAGCGGGAAA TGTACCGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGACAAACAGAGGC AGAACCCATCAGCATAGATCCTCAAGCTTCTCAGCAGCCGAAACAAGATG GCGAGCAGGGGAAGTCCGCGTCTGCTGGGGGCGGCGAGAGCGGAAAGGAG CAGGCCATGTTCCCACCACCCATCGGGCCAATGGTAGCGGTATATCTGGA CGATACCTCGGTGGATACGTTGAGAGCCCATTTCCCCGAAGCTCGTGACG GGCAGTTGAGGAAGGTCGTTCTTCAGTACGGCCCTTCGGCGTCCGAGCGG GAAATGTACCGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGGTGACGGG GGACGCCTCAAGCTTTGCGCGGCGCGCTCTGGTTGCCTCCGTATCTCACG CTGGAAAGATTGTCGAACCGGCGTCTCTATCGGCGACGATCGATATCTCG CCTCCTGCCATCACAGACCCTGAGGCACCAGCGGTGGCGGAAAACGATGG TCCGGGACCCCTGGCCAGCGCCGTATTGATTGAACAGGCCAAAAAGGCCG GGGCGACAAAGGAGGTGACGGGGGACGCCTCAAGCTTTGCGCGGCGCGCT CTGGTTGCCTCCGTATCTCACGCTGGAAAGATTGTCGAACCGGCGTCTCT ATCGGCGACGATCGATATCTCGCCTCCTGCCATCACAGACCCTGAGGCAC CAGCGGTGGCGGAAAACGATGGTCCGGGACCCCTGGCCAGCGCCGTATTG ATTGAACAGGCCAAAAAGGCCGGGGCGACAAAGGAGGAAATGTGGGAGGG CACACTTCCACCCTTGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAG GAGCGTACGTAAGGCTTAAGGAACCCATTACCGTCTACGGCACTATTTGC CGCGCCGATTGGGTCGACGGCGCGTCCAATGTTTGCCGAGATACATTGGA GGGAGGGCAGAAGAGAGAGGAAGATTGGGAACCTTCGGACTGTTCCATCT GCGCGTTTTTCTCCGTCAGCCCGTGCAAGGGGATTTTCGAAAGGAAATGT GGGAGGGCACACTTCCACCCTTGTTGGCCCACCACCGTCAATTCCCAAGT GAACCAGGAGCGTACGTAAGGCTTAAGGAACCCATTACCGTCTACGGCAC TATTTGCCGCGCCGATTGGGTCGACGGCGCGTCCAATGTTTGCCGAGATA CATTGGAGGGAGGGCAGAAGAGAGAGGAAGATTGGGAACCTTCGGACTGT TCCATCTGCGCGTTTTTCTCCGTCAGCCCGTGCAAGGGGATTTTCGAAAG GTTTGTAGCAACGAGCAAACGTCGGGACGAGTACCTCAAAACGTTCGAAA CAGAGCAAGAAGCAGATGACGAGGGAGACGGAATTTCCGAGGGAGAGGCA GGCACTATGCGAGAAACCCGCGGAAGTACCAGCGAGACGGCGGACGCAAG AGCAACCTCGGTGGAACGAACAAGTACACAAGACGGTAGGCGTGCCGGCA CTGGCACGGCGGAGGGGAAGGCAAGAAAGAAACAAAATTCGACCGCTGGA AAGGAGGTAAACGTTGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCGGAA GCGGCAGGCAGACCGAGACCTCATCGAAGAGCAGCTGGAGAAGGAAGCTT TGGCCATTTTCCAAGAAATGAAGAAGTGCATGATCTACCATGACCTGTAC TAAGTTTGTAGCAACGAGCAAACGTCGGGACGAGTACCTCAAAACGTTCG AAACAGAGCAAGAAGCAGATGACGAGGGAGACGGAATTTCCGAGGGAGAG GCAGGCACTATGCGAGAAACCCGCGGAAGTACCAGCGAGACGGCGGACGC AAGAGCAACCTCGGTGGAACGAACAAGTACACAAGACGGTAGGCGTGCCG GCACTGGCACGGCGGAGGGGAAGGCAAGAAAGAAACAAAATTCGACCGCT GGAAAGGAGGTAAACGTTGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCG GAAGCGGCAGGCAGACCGAGACCTCATCGAAGAGCAGCTGGAGAAGGAAG CTTTGGCCATTTTCCAAGAAATGAAGAAGTGCATGATCTACCATGACCTG TACTAA back to top
|