mRNA_E-siliculosus-1a_M_contig8.16077.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16077.1 vs. uniprot
Match: D8LQK9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQK9_ECTSI) HSP 1 Score: 2313 bits (5995), Expect = 0.000e+0 Identity = 1276/1379 (92.53%), Postives = 1292/1379 (93.69%), Query Frame = 3
Query: 93 MAPTMQSSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAFSAGKTDPTEIAQAFSRARGLEVITRVISGEPMAKPSVLSLCCRTAVWVVDKFGSGVSHSQGGGLVEALVGRLDRGVSGDDAQTVECQVECARLMSSLAGQAASLLIDGGALGAIEGMLEQLGGNHSSIMRPCCEALERVSRTEEGRATFEERGTGGVLLATIRDFPEALEEGSDVALASALKVVERIFTGKSPEACALSLRAKSEEESCDDPHRPTFSDYDNCVETVLTVVEATPEAPGAAAATCLWWLSGASSKAPDRALSAILAAAXXXXXXXXXXEAREAEKAAAQLLVSADVWSWFSRGDGGEGDVQEEGENVPPARPVEGARFLAALCLCRPGLECLEAAVKKESPRRVAEALVTLCESADPLLARACFRIIERLAKGGTGPQVFVDAGALAAAAVAGALFEVEEDAETVEDAEAHAIAAALGAVATLAEAGGKDARPVVDDAFQLSVRCLARVGEYSGRPAAAAAKSALDVITVRLTRPDRPKGAAGVRGGGAAAGPAPAAEGAVVENDEGGGDTDETVSGAPGDADVEDAAEDVDTPMEILKDAGAILAVMKAHSTDARVQQSGWRSLIAMDTGRGDVEKFWTGVGDGPQSRRQMLKDCLERHGGDSLVAGQVADILEGLVLQGDSADGDGSSLTASLSDAPGEESPRLPSDHEEAEGGDEDDASEHVKSXXXXXASPGESGPPEEDQNAAEEEGSQENIKHSTDAAHPEEVEQVVNGEDEDKDGGLEVAGDKGDVPEDKGAEAGGGDEATPVAEASEGAGNADGGSDPLDDAEGKSETLLPEDVLMEIGLMGTETLEGGGSSGSSDSSRTAPVVAAVAEDAVTGKGSTTRPNVVRSLFRSNGHANDENSAAGDTVEAEKPEAKTDCSLNASVVMPSKEELELRRSWAKLEKLHSDIVGRSQILGGESAQMVAAMPEPSVLKERVGALLEETDSGDSRDAFAAASLALVGALTAATGALNNSQKEVQRYLAMSRDLRVTSTWTDISEAMQWTMDSLKGTVILFTPHTAGGLTKALGLCKNMDSAFKLFKEAALQIKIIVVELAGEHEPNTVWRVNQSLFKGLPENRKVMTLRHLRSLVVAYDHLSDEMRRDLTTALEIIKNREVLNMMGKYCIQAEAAEEKRREAKLATAEERLKVGRRPS------------------------GTRQSITPGRRSPPMGIRASFSEPSPPSLARGTLGTPATTTPVRSNGAAESPGSGGSNGGNNVGGRASPPFGSGSRKAPLITPRSGRSTATPPGGVGGSGIPRGVASHSRRRESFTVEAEAGSSAMEDRRSRSPTFKRRPAGGRSKSPVTARVRGTRRVSRSLTPR 4157
MAPTMQSSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAFSAGKTDPTEIAQAFSRARGLEVITRVISGEPMAKPSVLSLCCRTAVWVVDKFGSGVSHSQGGGLVEALVGRLDRGVSGDDAQTVECQVECARLMSSLAGQAASLLIDGGALGAIE MLEQLGGNHSSIMRPCCEALERVSRTEEGRATFEERGTGGVLLATIRDFPEALEEGSDVALASALKVVERIFTGKSPEACALSLRAKSEEESCDDPHRPTFSDYDNCVETVLTVVEATPEAPGAAAATCLWWLSGASSKAPDRALSAILAAA EAREAEKAAAQLLVSADVWSWFSRGDGGEGDVQEEGENVPPARPVEGARFLAALCLCRPGLECLEAAV++ESPRRVAEALVTLCESADPLLARACFRIIERLAKGGTGPQVFVDAGALAAAAVAGALFEVEEDAETVEDAEAHAIAAALGAVATLA+AGGKDARPVVDDAFQLSVRCLARVGEYSGRPAAAAAKSALDVITVRLTRPDRPKGAAGVRGGGAAAGPAP A GAVVENDEGGGDTD+ VSGAPGDA VEDAAEDVDTPMEILKDAGAILAVMKAHSTDARVQQSGWRSLIAMDTGRGDVEKFWTGVGDGPQSRRQML+DCLERHGGDSLVAGQVADILEGLVLQGDSADGDGSSLTASLSDAPGEESPRLPSDHEEAEGGDEDDA XXXXX Q+NIKHSTDAAH +EVEQVVNGEDEDKDGGLEV GDKGDVPEDKGAE GGDEAT VAEASEGAGNADGGSDPL DAEGKSETLLPEDVL+EIGL+GT+TLEGGGSSGSSDSSRTA VVAAVAEDAVTG+GSTTRPNV RSLF SNGHAND+NSAAGDTVEAEKPEAK DCSLNASVV+PSKEEL+LRRSWAKLE LHSDIVGRSQILGGESA MVAAM EPSVLKERV ALLEET+SGDSRDAFAAASLALVGALTAATGALNNSQKEVQRYLAMSRDLRVTSTWTDISEAMQWTMDSLKGTVILFTPHTAGGLTKALGLCKNMDSA KLFKEAALQIKIIVVELAGEHEPNTVWRVNQSLFKGLPENRKVMTLRHLRSLVVAYDHLSDEMRRDLTTALEIIKNREVLNMMGKYCIQAEAAEEKR EAKLATA+ERLKVGRRPS GTRQSITPGRRSPPMGIRASFSEPSPPSLARG LGTP TTTPVRSNGAAESPGSGGSNGGNNVGGRASPP GSGSRKAPLITPRSGRSTATPPGGVGGSGIPRGVASHSRRRESF VEAEAGSSAMEDRRSRSP FKRRPAGGRSKSPVTARVRGTRRVSRSLTPR
Sbjct: 1 MAPTMQSSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAFSAGKTDPTEIAQAFSRARGLEVITRVISGEPMAKPSVLSLCCRTAVWVVDKFGSGVSHSQGGGLVEALVGRLDRGVSGDDAQTVECQVECARLMSSLAGQAASLLIDGGALGAIECMLEQLGGNHSSIMRPCCEALERVSRTEEGRATFEERGTGGVLLATIRDFPEALEEGSDVALASALKVVERIFTGKSPEACALSLRAKSEEESCDDPHRPTFSDYDNCVETVLTVVEATPEAPGAAAATCLWWLSGASSKAPDRALSAILAAAAVADGTEATNEAREAEKAAAQLLVSADVWSWFSRGDGGEGDVQEEGENVPPARPVEGARFLAALCLCRPGLECLEAAVERESPRRVAEALVTLCESADPLLARACFRIIERLAKGGTGPQVFVDAGALAAAAVAGALFEVEEDAETVEDAEAHAIAAALGAVATLADAGGKDARPVVDDAFQLSVRCLARVGEYSGRPAAAAAKSALDVITVRLTRPDRPKGAAGVRGGGAAAGPAPEAGGAVVENDEGGGDTDKAVSGAPGDAKVEDAAEDVDTPMEILKDAGAILAVMKAHSTDARVQQSGWRSLIAMDTGRGDVEKFWTGVGDGPQSRRQMLRDCLERHGGDSLVAGQVADILEGLVLQGDSADGDGSSLTASLSDAPGEESPRLPSDHEEAEGGDEDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDNIKHSTDAAHQQEVEQVVNGEDEDKDGGLEVPGDKGDVPEDKGAEVEGGDEATAVAEASEGAGNADGGSDPLGDAEGKSETLLPEDVLIEIGLIGTKTLEGGGSSGSSDSSRTASVVAAVAEDAVTGEGSTTRPNVARSLFGSNGHANDKNSAAGDTVEAEKPEAKADCSLNASVVVPSKEELKLRRSWAKLETLHSDIVGRSQILGGESAPMVAAMAEPSVLKERVSALLEETESGDSRDAFAAASLALVGALTAATGALNNSQKEVQRYLAMSRDLRVTSTWTDISEAMQWTMDSLKGTVILFTPHTAGGLTKALGLCKNMDSALKLFKEAALQIKIIVVELAGEHEPNTVWRVNQSLFKGLPENRKVMTLRHLRSLVVAYDHLSDEMRRDLTTALEIIKNREVLNMMGKYCIQAEAAEEKRWEAKLATADERLKVGRRPSDMLGSSVRKARLRSALHQASCLGNGTRQSITPGRRSPPMGIRASFSEPSPPSLARGGLGTPTTTTPVRSNGAAESPGSGGSNGGNNVGGRASPPLGSGSRKAPLITPRSGRSTATPPGGVGGSGIPRGVASHSRRRESFAVEAEAGSSAMEDRRSRSPMFKRRPAGGRSKSPVTARVRGTRRVSRSLTPR 1379
BLAST of mRNA_E-siliculosus-1a_M_contig8.16077.1 vs. uniprot
Match: F0XY39_AURAN (Calponin-homology (CH) domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY39_AURAN) HSP 1 Score: 65.5 bits (158), Expect = 1.370e-6 Identity = 63/247 (25.51%), Postives = 112/247 (45.34%), Query Frame = 3
Query: 2952 GESAQMVAAMPEPSVLKERVGALLEETDSGDSRDAFAAASLALVGALTAATGALNNSQKEVQRYLAMSRDLRVTSTWTDISEAMQWTMDSLKGTVILFTPHTAGGLTKALGLCKNMDSAFKLFKEAALQIKIIVVELAGEHEPN-TVWRV--NQSLFKGLPENRKVMTLRHLRSLVVAYDHLSDEMRRDLTTALEIIKNREVLNMMGKYCIQAEAAEEKRREAKLATAEERLKVGRRPSGTRQSITP 3683
GE+ +++ + E ++ K R AL E ++ + L A +AA L + + Y A + A++ TM+ LKG + + L KAL + + KLFK A L++K +VV + ++ + W + F + + + L HLR+L VAYD+++ + +R+LTT E++ N + L + K+C+ ++ RE +L E R +V R G P
Sbjct: 366 GEALRLMQSQAEEAIAKSRDDALAEAAEAPPPQSP----GLPDEHASSAALAKLAEASEGTVAYSAAA------------FAALKTTMEYLKGHAVSLHRRESSKLLKALDRADDGVARAKLFKHAHLKVKEVVVRVTRSNQRSGRHWEPFHGDASFATVQPHELALILTHLRNLAVAYDNMTADEKRELTTVRELVVNLDWLCALAKHCVASDERRYADRERRL-DREPRARVDRAGDGAAPPAPP 595 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16077.1 >prot_E-siliculosus-1a_M_contig8.16077.1 ID=prot_E-siliculosus-1a_M_contig8.16077.1|Name=mRNA_E-siliculosus-1a_M_contig8.16077.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1356bp MAPTMQSSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAFSAGKTDPTEback to top mRNA from alignment at E-siliculosus-1a_M_contig8:471135..488647- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16077.1 ID=mRNA_E-siliculosus-1a_M_contig8.16077.1|Name=mRNA_E-siliculosus-1a_M_contig8.16077.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=17513bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:471135..488647- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:471135..488647- >mRNA_E-siliculosus-1a_M_contig8.16077.1 ID=mRNA_E-siliculosus-1a_M_contig8.16077.1|Name=mRNA_E-siliculosus-1a_M_contig8.16077.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=8136bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:471135..488647- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |