mRNA_E-siliculosus-1a_M_contig8.16068.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 4.980e-18 Identity = 49/82 (59.76%), Postives = 54/82 (65.85%), Query Frame = -2
Query: 43 GADEKLTNNDGDTPVDVVGAWEQDG-----PETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV--------SSGVQRV 249
GADEKL NNDGDTP DVVG EQ+ E + Q + RMLARAPADRSWRRR WLVLSRSCP V SS + R+
Sbjct: 377 GADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRI 458
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 5.870e-14 Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQ-----DGPETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADE+LTNN GD P DV+ A +Q + + + Q + RML RAPADRSWRRR WLVLSR CP V
Sbjct: 139 GADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRV 205
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 1.270e-13 Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQDGP-----ETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADE+LTN +GD P D+VGA + E + Q + RMLARAPADRSWRRR LVLSRSCP V
Sbjct: 244 GADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRV 310
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 2.550e-13 Identity = 40/68 (58.82%), Postives = 44/68 (64.71%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQDG------PETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADEKLTNN G TP DV+ Q+ E + Q + RML APADRSWRRR WLVLSRSCP V
Sbjct: 215 GADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCPTRV 282
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 2.830e-13 Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQ-----DGPETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADE +N++GD P DV+G +++ + + + + + RMLARAPADRSWRRR WLVLSRSCP V
Sbjct: 374 GADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRV 440
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.490e-12 Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQDGP-----ETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GAD+KLT N G TP VV A +QD E + Q + RMLAR PA RSWRRR WLVLSRSCP V
Sbjct: 338 GADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRV 404
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 3.460e-12 Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQDGP-----ETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADEKLT++ TP D++G G E + Q + +MLARAPADRSWRRRSWLVLSRSCP V
Sbjct: 376 GADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRV 442
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 3.540e-12 Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQDG-----PETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADEKLTN+ G TP DV+ A +Q E + Q + RM+A PADRSWRRR WLVLSRSCP V
Sbjct: 338 GADEKLTNSVGKTPADVIRALQQGDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCPTRV 404
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: A0A6H5JB39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB39_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 5.390e-11 Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQDGP-----ETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADE L N DTP DV+G W + E + Q + +LARA ADRSW RR WLVLSRSCP V
Sbjct: 300 GADEMLKKNRVDTPADVIGVWGDEDRNDEEIEADNQRIRPVLARAAADRSWHRRDWLVLSRSCPTRV 366
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.130e-10 Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = -2
Query: 64 GADEKLTNNDGDTPVDVVGAWEQDGP-----------------ETNRQCLLRMLARAPADRSWRRRSWLVLSRSCPCYV 249
GADEKLT+ DG+TP + E++ P E ++ + +MLARAPADRSW RR WLVLSRSCP V
Sbjct: 119 GADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKV 197 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16068.1 >prot_E-siliculosus-1a_M_contig8.16068.1 ID=prot_E-siliculosus-1a_M_contig8.16068.1|Name=mRNA_E-siliculosus-1a_M_contig8.16068.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=68bp MRLATLFGLRSSHNMGRNGSAPASCGDAMTCRLERVPAFGEGTGGWSRGHback to top mRNA from alignment at E-siliculosus-1a_M_contig8:394538..398019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16068.1 ID=mRNA_E-siliculosus-1a_M_contig8.16068.1|Name=mRNA_E-siliculosus-1a_M_contig8.16068.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3482bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:394538..398019- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:394538..398019- >mRNA_E-siliculosus-1a_M_contig8.16068.1 ID=mRNA_E-siliculosus-1a_M_contig8.16068.1|Name=mRNA_E-siliculosus-1a_M_contig8.16068.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:394538..398019- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |