mRNA_E-siliculosus-1a_M_contig8.16055.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16055.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16055.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: D8LQM3_ECTSI (Malate dehydrogenase n=7 Tax=Eukaryota TaxID=2759 RepID=D8LQM3_ECTSI)

HSP 1 Score: 677 bits (1746), Expect = 1.560e-245
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1
Query:    1 MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 1047
            MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN
Sbjct:    1 MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 349          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A097IUM6_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM6_9PHAE)

HSP 1 Score: 623 bits (1606), Expect = 3.370e-224
Identity = 313/349 (89.68%), Postives = 338/349 (96.85%), Query Frame = 1
Query:    1 MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 1047
            MSA+AR+Q+AS++AAP+ASKA+GVS++R FTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGK+EHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGAD+VVIPAGVPRKPGMTRDDLFNTNASIVKGIA+QCSKSCP ACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRA+TF+AENQGMDVDK+DVTV+GGHAGTTIMPLLSQVEGAKFS+EDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGV+GV ECAFVESDLT+APFFASP +LGKDGVSKVHGF NLS+FEQ+LVD+NVPAL+K A     FVK+N
Sbjct:    1 MSAIARVQMASRLAAPIASKAVGVSAARSFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKIEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADIVVIPAGVPRKPGMTRDDLFNTNASIVKGIADQCSKSCPNACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAKTFVAENQGMDVDKVDVTVVGGHAGTTIMPLLSQVEGAKFSEEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVQGVKECAFVESDLTDAPFFASPVSLGKDGVSKVHGFSNLSAFEQSLVDENVPALMKQAXXXXXFVKSN 349          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A097IUN2_SACJA (Malate dehydrogenase n=3 Tax=Laminariales TaxID=2886 RepID=A0A097IUN2_SACJA)

HSP 1 Score: 593 bits (1530), Expect = 1.280e-212
Identity = 299/349 (85.67%), Postives = 326/349 (93.41%), Query Frame = 1
Query:    1 MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 1047
            MSA+AR+Q  +K+AAPMASKALGVSSSR FTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGK+EHLSLFDIVNTPGVAADISHC++K KVTGHKGAEEM  ALDG+D+VVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQ SKSCP AC LIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDV RA+TF+AE+QGMDV K+ V VIGGHAGTTIMPLLSQV+GAKF++EDI ALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAG+VLDGLNG + V EC FV+ DLT+APFFASPCTLG DGVSK+HGF NL+ FEQ+LVD+NVP+L+ MA+KGSDFVKNN
Sbjct:    1 MSAIARVQPLAKLAAPMASKALGVSSSRAFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKIEHLSLFDIVNTPGVAADISHCDAKAKVTGHKGAEEMGAALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQVSKSCPNACILIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVVRAKTFVAEHQGMDVSKIKVDVIGGHAGTTIMPLLSQVKGAKFTEEDIAALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGRVLDGLNGKKNVKECTFVDCDLTDAPFFASPCTLGTDGVSKIHGFSNLTPFEQSLVDENVPSLISMAKKGSDFVKNN 349          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A097IUM5_9PHAE (Malate dehydrogenase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IUM5_9PHAE)

HSP 1 Score: 581 bits (1498), Expect = 9.560e-208
Identity = 293/349 (83.95%), Postives = 321/349 (91.98%), Query Frame = 1
Query:    1 MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 1047
            MSAVAR     ++AAP ASKA+GVS++R FTGTARAQNKV VVGAAGGIGQ MSLLLKLSGK+ HLSLFDIVNTPGVAADISHCNS+GKVTGHKGAEEM TALDGAD+VVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCP ACFLIISNPVNSTVPIF DVLKANGV+NP KLMGVT+LDV RA+TF+AE+QG+DV K+ V VIGGHAGTTI+PLLS+V+GA F++EDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAG+VLDGLNGV+ V EC FVE DLT+APFFASPCTLGKDGVSK+HGF  L+ FEQALVDDNVP L+ MA+KGS+FVKNN
Sbjct:    1 MSAVARASPLVRMAAPTASKAIGVSAARSFTGTARAQNKVAVVGAAGGIGQSMSLLLKLSGKIGHLSLFDIVNTPGVAADISHCNSEGKVTGHKGAEEMGTALDGADIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPNACFLIISNPVNSTVPIFGDVLKANGVFNPAKLMGVTSLDVVRAKTFVAEHQGLDVSKMKVDVIGGHAGTTIIPLLSKVKGADFTEEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGRVLDGLNGVKNVKECTFVECDLTDAPFFASPCTLGKDGVSKIHGFSKLTPFEQALVDDNVPTLINMAKKGSEFVKNN 349          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A097IUQ0_9PHAE (Malate dehydrogenase n=8 Tax=Sargassum TaxID=3015 RepID=A0A097IUQ0_9PHAE)

HSP 1 Score: 578 bits (1489), Expect = 2.240e-206
Identity = 289/349 (82.81%), Postives = 322/349 (92.26%), Query Frame = 1
Query:    1 MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 1047
            MS V R +  +K+AAPM S+A+G+SS R F+GT R QNKVTVVGAAGGIGQPMSLL+KLSGK++HLSLFDIVNTPGVAADI HCNSKGKV G+KGAEEMA +LDG+DVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQC+KSCPKACFLIISNPVNSTVPIFA+VLKA+GVY+P KLMGVTTLDV RA+TF+AENQGMDVDK++V VIGGHAGTTIMPLLSQV+GA F++EDIK LTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFA KVLDGLNGV+G+ EC FVES LT APFFASPCTLG +GVS++HG+G LS FEQALVD+NVPALVKM+QKG DFVKNN
Sbjct:    1 MSVVTRTRPLAKMAAPMVSRAVGISSVRAFSGTPRVQNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNTPGVAADIGHCNSKGKVMGYKGAEEMAASLDGSDVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACFLIISNPVNSTVPIFAEVLKASGVYDPAKLMGVTTLDVARAKTFVAENQGMDVDKVEVDVIGGHAGTTIMPLLSQVKGANFTEEDIKTLTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIKECTFVESPLTSAPFFASPCTLGTEGVSEIHGYGQLSPFEQALVDENVPALVKMSQKGIDFVKNN 349          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A097IUP2_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUP2_9PHAE)

HSP 1 Score: 571 bits (1471), Expect = 1.280e-203
Identity = 283/345 (82.03%), Postives = 317/345 (91.88%), Query Frame = 1
Query:   13 ARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 1047
            ARIQ  +++ AP+A KALGVS++R FT +ARA+NKV VVGAAGGIGQPMSLL+KLSGK+EHLSLFDIVNTPGVAAD+SHCN+KGKV+ HKG EEM  ALDG D+VVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQC+KSCP ACFLIISNPVNSTVPIF DVLK  GV++P+KLMGVT LD+CRA TF+AENQGMDVDK+ V VIGGHAGTTIMPLLSQV+GAKFS+EDIKALTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFA +VLDGLNG  GV EC FVES LT+AP+FASPCTLGK+GVS+VHGFG LS FEQ+LVD+NVPAL+KMA+KG+DFVKNN
Sbjct:    6 ARIQPVARMVAPVALKALGVSATRSFTASARAKNKVAVVGAAGGIGQPMSLLMKLSGKIEHLSLFDIVNTPGVAADLSHCNTKGKVSAHKGPEEMGAALDGCDLVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPNACFLIISNPVNSTVPIFGDVLKTAGVFDPRKLMGVTMLDICRANTFVAENQGMDVDKVSVDVIGGHAGTTIMPLLSQVKGAKFSEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAERVLDGLNGATGVKECTFVESSLTDAPYFASPCTLGKEGVSEVHGFGTLSPFEQSLVDENVPALIKMAKKGTDFVKNN 350          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A097IUI7_9PHAE (Malate dehydrogenase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A097IUI7_9PHAE)

HSP 1 Score: 568 bits (1464), Expect = 1.610e-202
Identity = 283/348 (81.32%), Postives = 318/348 (91.38%), Query Frame = 1
Query:    4 SAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 1047
            S  +R+   +++AAP ASKA+G+S+SR FT +  AQNKV VVGAAGGIGQPMSLLLKLSGK+EHLSLFDIVNTPGVAADI HCN+ GKVT H G EEM+TALDG D+VVIPAGVPRKPGM+RDDLFNTNASIVKGIAEQC+KSCPKACFLIISNPVNSTVPIFADVLK+ GV++P KLMGVTTLDVCRA+TF+AENQGMDVDK++V VIGGHAGTTIMPLLSQ+ GAKFSDEDIKALTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFAG+VLDGL+G   + EC FVE D+T+APFFASPCTLGK+GVS++HGF NLSSFEQALVDDNV +L KMA+KGSDFVKN+
Sbjct:    4 SIASRVSSITRMAAPTASKAVGISASRTFTSSTTAQNKVAVVGAAGGIGQPMSLLLKLSGKIEHLSLFDIVNTPGVAADIGHCNTHGKVTSHTGPEEMSTALDGCDIVVIPAGVPRKPGMSRDDLFNTNASIVKGIAEQCAKSCPKACFLIISNPVNSTVPIFADVLKSAGVFHPGKLMGVTTLDVCRAKTFVAENQGMDVDKVEVDVIGGHAGTTIMPLLSQIPGAKFSDEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAGRVLDGLDGQADIKECTFVECDITDAPFFASPCTLGKEGVSEIHGFKNLSSFEQALVDDNVDSLKKMAKKGSDFVKNS 351          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A835YGB7_9STRA (Malate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB7_9STRA)

HSP 1 Score: 493 bits (1270), Expect = 4.530e-173
Identity = 248/335 (74.03%), Postives = 289/335 (86.27%), Query Frame = 1
Query:   34 KVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFV 1038
            +VA+P+A++ALG+ ++R F+ +  AQ KVTVVGAAGGIGQP+SLLLKLSGKV+HLSL+D+V TPGVAAD+SHCN+ GKVTGHKGA E+  AL  ADVVVIPAGVPRKPGMTRDDLFNTNA IVKGIAE C+++CPKA FLIISNPVNSTVPIFA+VLK  GVY+ +KLMGVTTLDVCRAQTF+AEN G  V+   V VIGGHAGTTI+PLLSQVEGAKFSD+D++ALTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFA +VL  + G   + EC FVE+DLT AP+FA+P  LGKDGV KV GFG LS+FEQ ++D+NVPAL   A+KG DFV
Sbjct:   10 RVASPLATRALGLEAARSFSSSRSAQAKVTVVGAAGGIGQPLSLLLKLSGKVDHLSLYDLVGTPGVAADLSHCNTNGKVTGHKGASELKAALQDADVVVIPAGVPRKPGMTRDDLFNTNAGIVKGIAEACAEACPKARFLIISNPVNSTVPIFAEVLKGRGVYDKKKLMGVTTLDVCRAQTFVAENLGQSVNDTAVDVIGGHAGTTILPLLSQVEGAKFSDKDLEALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAIRVLAAMEGEADIRECTFVENDLTAAPYFATPVILGKDGVEKVLGFGKLSAFEQKILDENVPALQAQAKKGVDFV 344          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: F0YJC9_AURAN (Malate dehydrogenase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC9_AURAN)

HSP 1 Score: 430 bits (1105), Expect = 3.630e-148
Identity = 216/313 (69.01%), Postives = 253/313 (80.83%), Query Frame = 1
Query:  100 ARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFV 1038
            AR  + V V+GAAGGIGQPMSLL+K S  V  LSL+D+VNTPGVAAD+SHC++   V    G    A AL+G DVVVIPAGVPRKPGMTRDDLFNTNASIV+ +AE C+ +CP ACFLII+NPVNSTVPIFA+ LK +GVY+  KL GVTTLDV RA+TF+AENQG DV   DV VIGGHAGTTI+PLLSQ+EGA FS +DI  LTHRI FGGDEVVQAKDGAGSATLSMA+AGA+F  KVL+ LNG  G+TECAFVESD+T+AP+F+SP TLGK+GV  +HG+G LS FEQ ++D  VP L+  A+KG  FV
Sbjct:   15 ARYASNVAVLGAAGGIGQPMSLLIKQSPLVNELSLYDVVNTPGVAADLSHCSTPATVRSTVGMGNAAEALEGMDVVVIPAGVPRKPGMTRDDLFNTNASIVQSLAEACATTCPNACFLIIANPVNSTVPIFAETLKKHGVYDKNKLFGVTTLDVVRAKTFVAENQGGDVLNTDVDVIGGHAGTTILPLLSQIEGASFSQDDIDKLTHRIMFGGDEVVQAKDGAGSATLSMAYAGAHFTFKVLEALNGATGITECAFVESDVTDAPYFSSPVTLGKNGVETIHGYGTLSPFEQDVLDKAVPDLIAQAEKGVKFV 327          
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Match: A0A7S0L929_9EUKA (Malate dehydrogenase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L929_9EUKA)

HSP 1 Score: 427 bits (1099), Expect = 1.740e-147
Identity = 215/310 (69.35%), Postives = 255/310 (82.26%), Query Frame = 1
Query:  115 KVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKN 1044
            KV V+GA+GGIGQP++LLLKL  +V  LSLFD+V TPGVAADISHC +  KVTGH G EE+  AL+G  VVVIPAGVPRKPGMTRDDLFNTNASIV+G+AE C+KSCP A FLIISNPVNSTVPIFA+ LK +GVYNP+KL GVTTLDV RA TF++ENQGMDV+  +V VIGGHAGTTI+PLLSQV GAKFS+E+++ LTHRIQFGGDEVV+AKDGAGSATLSMA+AG  F  ++L  ++G   V EC+FVE++LT APFF++P  LG +GV +V  +G LS  EQA +D  VP LV  A+KG DFVKN
Sbjct:   10 KVAVMGASGGIGQPLALLLKLDNRVTELSLFDVVRTPGVAADISHCCTPAKVTGHVGMEEVGNALNGCKVVVIPAGVPRKPGMTRDDLFNTNASIVQGLAEACAKSCPDAMFLIISNPVNSTVPIFAETLKKHGVYNPRKLFGVTTLDVVRANTFVSENQGMDVNNTNVRVIGGHAGTTILPLLSQVPGAKFSEENVQNLTHRIQFGGDEVVKAKDGAGSATLSMAYAGQQFTSRLLAAISGEANVVECSFVENNLTAAPFFSTPVRLGPNGVEEVLHYGTLSKAEQATLDAMVPDLVAQAKKGVDFVKN 319          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQM3_ECTSI1.560e-245100.00Malate dehydrogenase n=7 Tax=Eukaryota TaxID=2759 ... [more]
A0A097IUM6_9PHAE3.370e-22489.68Malate dehydrogenase n=1 Tax=Punctaria latifolia T... [more]
A0A097IUN2_SACJA1.280e-21285.67Malate dehydrogenase n=3 Tax=Laminariales TaxID=28... [more]
A0A097IUM5_9PHAE9.560e-20883.95Malate dehydrogenase n=1 Tax=Desmarestia viridis T... [more]
A0A097IUQ0_9PHAE2.240e-20682.81Malate dehydrogenase n=8 Tax=Sargassum TaxID=3015 ... [more]
A0A097IUP2_9PHAE1.280e-20382.03Malate dehydrogenase n=1 Tax=Dictyopteris undulata... [more]
A0A097IUI7_9PHAE1.610e-20281.32Malate dehydrogenase n=1 Tax=Ishige okamurae TaxID... [more]
A0A835YGB7_9STRA4.530e-17374.03Malate dehydrogenase n=1 Tax=Tribonema minus TaxID... [more]
F0YJC9_AURAN3.630e-14869.01Malate dehydrogenase n=1 Tax=Aureococcus anophagef... [more]
A0A7S0L929_9EUKA1.740e-14769.35Malate dehydrogenase (Fragment) n=1 Tax=Coccolithu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:285399..290269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1050
Model size1050
Exons9
Ec32 orthologEc-10_006200.1
Ec32 ortholog descriptionmalate dehydrogenase
Hectar predicted targeting categorymitochondrion
Seed ortholog evalue4.2e-192
Seed ortholog score677.2
Taxonomic scopeEukaryota
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EC1.1.1.37
EggNOG OGsCOG0039@1,KOG1494@2759
EggNOG free text desc.L-malate dehydrogenase activity
GOsGO:0002165,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006091,GO:0006094,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006919,GO:0007275,GO:0007431,GO:0007435,GO:0007552,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009060,GO:0009117,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009893,GO:0009987,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016051,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019222,GO:0019318,GO:0019319,GO:0019362,GO:0019538,GO:0019637,GO:0019674,GO:0019752,GO:0022612,GO:0030060,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031974,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0034641,GO:0035069,GO:0035070,GO:0035071,GO:0035096,GO:0035209,GO:0035272,GO:0036211,GO:0042802,GO:0042803,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0043436,GO:0043543,GO:0043621,GO:0043648,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046364,GO:0046483,GO:0046496,GO:0046554,GO:0046983,GO:0048102,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048707,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051087,GO:0051171,GO:0051173,GO:0051186,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060033,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0072350,GO:0072524,GO:0080090,GO:1901360,GO:1901564,GO:1901576,GO:2000116,GO:2001056
KEGG ModuleM00009,M00011,M00012,M00168,M00171,M00353,M00355
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00020,map00270,map00620,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ReactionR00342,R07136
KEGG TC1.A.33.1
KEGG koko:K00026,ko:K03283
KEGG rclassRC00031
Preferred nameMDH2
Seed eggNOG ortholog2880.D8LQM3
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936159.6551404-CDS-E-siliculosus-1a_M_contig8:285398..2855151622936159.6551404-CDS-E-siliculosus-1a_M_contig8:285398..285515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 285399..285515 +
1696250954.6716766-CDS-E-siliculosus-1a_M_contig8:285398..2855151696250954.6716766-CDS-E-siliculosus-1a_M_contig8:285398..285515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 285399..285515 +
1622936159.673157-CDS-E-siliculosus-1a_M_contig8:285825..2859751622936159.673157-CDS-E-siliculosus-1a_M_contig8:285825..285975Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 285826..285975 +
1696250954.695582-CDS-E-siliculosus-1a_M_contig8:285825..2859751696250954.695582-CDS-E-siliculosus-1a_M_contig8:285825..285975Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 285826..285975 +
1622936159.685781-CDS-E-siliculosus-1a_M_contig8:286932..2870331622936159.685781-CDS-E-siliculosus-1a_M_contig8:286932..287033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 286933..287033 +
1696250954.7089095-CDS-E-siliculosus-1a_M_contig8:286932..2870331696250954.7089095-CDS-E-siliculosus-1a_M_contig8:286932..287033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 286933..287033 +
1622936159.6994114-CDS-E-siliculosus-1a_M_contig8:287395..2875341622936159.6994114-CDS-E-siliculosus-1a_M_contig8:287395..287534Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 287396..287534 +
1696250954.720662-CDS-E-siliculosus-1a_M_contig8:287395..2875341696250954.720662-CDS-E-siliculosus-1a_M_contig8:287395..287534Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 287396..287534 +
1622936159.7163002-CDS-E-siliculosus-1a_M_contig8:288083..2881711622936159.7163002-CDS-E-siliculosus-1a_M_contig8:288083..288171Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 288084..288171 +
1696250954.7394938-CDS-E-siliculosus-1a_M_contig8:288083..2881711696250954.7394938-CDS-E-siliculosus-1a_M_contig8:288083..288171Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 288084..288171 +
1622936159.733435-CDS-E-siliculosus-1a_M_contig8:288718..2887951622936159.733435-CDS-E-siliculosus-1a_M_contig8:288718..288795Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 288719..288795 +
1696250954.7534175-CDS-E-siliculosus-1a_M_contig8:288718..2887951696250954.7534175-CDS-E-siliculosus-1a_M_contig8:288718..288795Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 288719..288795 +
1622936159.7493672-CDS-E-siliculosus-1a_M_contig8:288986..2891031622936159.7493672-CDS-E-siliculosus-1a_M_contig8:288986..289103Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 288987..289103 +
1696250954.7635999-CDS-E-siliculosus-1a_M_contig8:288986..2891031696250954.7635999-CDS-E-siliculosus-1a_M_contig8:288986..289103Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 288987..289103 +
1622936159.7651749-CDS-E-siliculosus-1a_M_contig8:289463..2895831622936159.7651749-CDS-E-siliculosus-1a_M_contig8:289463..289583Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 289464..289583 +
1696250954.7745094-CDS-E-siliculosus-1a_M_contig8:289463..2895831696250954.7745094-CDS-E-siliculosus-1a_M_contig8:289463..289583Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 289464..289583 +
1622936159.7828643-CDS-E-siliculosus-1a_M_contig8:290128..2902691622936159.7828643-CDS-E-siliculosus-1a_M_contig8:290128..290269Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 290129..290269 +
1696250954.7847745-CDS-E-siliculosus-1a_M_contig8:290128..2902691696250954.7847745-CDS-E-siliculosus-1a_M_contig8:290128..290269Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 290129..290269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16055.1prot_E-siliculosus-1a_M_contig8.16055.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 285399..290269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16055.1

>prot_E-siliculosus-1a_M_contig8.16055.1 ID=prot_E-siliculosus-1a_M_contig8.16055.1|Name=mRNA_E-siliculosus-1a_M_contig8.16055.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=350bp
MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIG
QPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMA
TALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACF
LIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGM
DVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVV
QAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFF
ASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig8:285399..290269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16055.1 ID=mRNA_E-siliculosus-1a_M_contig8.16055.1|Name=mRNA_E-siliculosus-1a_M_contig8.16055.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4871bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:285399..290269+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGGCTGTTGCACGTATCCAGTTGGCGTCCAAGGTGGCTGCACCCAT GGCATCTAAAGCTCTGGGTGTCTCTTCTTCCCGCTTCTTCACGGGCACGG CACGTGCTCAGAACAAGGTGTGTGTGCAAGGCTCTACTGCTACAACAGAG TGCGAGTGTGGTTGGCTACACAGCAGTATCGGCGCTGATTTCCGCGGAAG CGCCCTTGCAATCAAACCAGCTGCAGGCACCTGCAGTTAGTCACGTGATG CGTGCTGCTAACGAAAAGTTATTGCCTGTCAGGCGTTGGAGTCATCTAGG GCCCCTCAACTGAAAATATTCTTGTCTCGTGTCACAACAATCGCCGCTGC GCGCCGGCACTTCGCTGAACCTTCTGCGGCCCTTCTGTTCGTCCAACTCG ACCAAAAACTCTATGATGCATACATAGGTAACCGTCGTGGGTGCCGCGGG CGGGATCGGGCAGCCCATGTCCCTTCTCCTCAAGCTGTCGGGGAAGGTCG AACACCTGTCTCTCTTCGACATCGTCAACACGCCTGGCGTTGCTGCCGAC ATCTCCCACTGCAACAGCAAGGGAAAGGTCAGTACGGCCATGATCACCCA CCACCAATATACAGCAGTACATAGCTTCATCCGGTATCCCGTAGAGTCGC CACGCGCTACTGCTGCCGCCGAAGGTTCACACCAAGCCTGTGCAAGCCTA TTTAAGACGGGAGACGGGAGGGAAGTATCCGTGTGTTGCTGATGCGTGTT TCGCTACCTTCCTTGCCGCTGCGGGCTATTTGCTGTCGGACACTTTTTTT TTTTCGCACCGCACGGTGTATGTTGCAAACGGTGTATTCAAACATGCAAC CTTCGTACTTGTAGTTTTGGTGAATTTTGCCATTAGGCGCTCGGCTGAAA ATTGGTATTGCATAGCGCCTGTGATGTGGGAGTACTGTACGGAAAACAGG GATCACCCTGTCGGGTGATTGGCGAATATGGCAAGACGGCATGATTGTAA ATATGTAGAAGGTCAAAGGCGGTGCAACCCAGCCATTTATTGCAGCGCTG TCTACCTTCTGGAAGCTCTGTCGCTCGTGGTATTACGCCGGGACTCTCCA CTCTCGACATGACATTCTCTCGCCTGGTACAAATGTATCTGTAGCGAATT GGGACTGACTCAAGTTGGCGTATCACTACATATTCTAGTCTGATACACCA GCGGGGGGGGGGGGTGAAGCTACATACATTTCCATTTTTCGTTCGCGAAA AAGAAACAACAGTCATCTACATGCGGCCCGTTGAGCTTTGTTTCTTCAAC AGCGGTTCGAATGAACACTGCCTGATGAAGTTTGTGCGCTCCGCGAGTTT GGATATTCATGCACCCAGAAACGGCTTCACCCCGTACTGCCCACTGGAGA CAGTTCGTGCACTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACTG CAGTCGTCAACGCACCACCACCTTTGTACATTCACTAAAGCACTCTACAA CTGCTATGCGCATATTCCTTGCTTCCCCGCGCAGGTGACCGGGCACAAGG GTGCCGAGGAAATGGCCACCGCATTGGACGGCGCAGACGTCGTGGTTATC CCTGCGGGCGTGCCCCGCAAGCCAGGAATGACACGGTGAGTTCGTCAACT AACAAACCACCAGCTAGCTGTGCATGAATTGGTGGGTTTGTGTATGTATG TATTCCAAGTGTTGCGTTTGTCCGTGGTTCCCCTACATCCAACAGTGATG TACGCTTGTTATTGTTGTTTTCGGGGGTGAGCCTGTTTCGACCACGGAAA TACGTCTGCTCTCTCTCAACAGTGCGGGGAGAGACGGGAGAGAGACGGGG GCTATGTTGCAAGTCACACGTGAAGATAGAAACTCACGTGCGGATTGTGT CATCTGCTGCGCACACAGCAGTTGCCTGATACACTACGATGTCGTTGTGT TTTTCCTGCAATCGCCGTTGCGTTGGTCCTTTGTTCCCGTACATCAGTGA CGACTTGTTCAACACCAACGCATCGATCGTCAAGGGCATCGCCGAACAGT GCTCCAAGAGCTGCCCCAAGGCGTGCTTCCTCATCATCTCCAACCCCGTA AACTCGACCGTGCCCATCTTCGCCGACGTGCTCAAGGTTGGTCAAGTATT ACAGGAAGGCTTGTTGTGTTGTTGTGTTCGGGGCGTTAAGTAAACCCACG CAGTCGTAGAGGGCCGTGTGTTAAGTGCTGCTGATTTTGTGTGCAAGAGG GGGAAAATATTGGGGTCTAGATCATTGTCCGCGGGTGGCTTCGTAGAAAG AGAGAGCTTGCGTGCTTTGCAAAGGGCGCAATCAACCGTGTGTCCATCGT GATGAGCTGAATCCCATCACAGGCACACGTAACACAGCAGCTCCAAGTGT CGTATAAAACACCTCTTGGTAGAGGCCAGAACGTGTGTCTTGGTGTTAAG ACAGCAGCAGCAGCGGTGGTAGAGCAGTACGGTACGACATGGGGCAAGAC CTAAAGGGTAGGGGAAAACGGGGATGTATCTGTATCTCTTGTGCGAGGAC AACATGATGACAATGATAAACACTAATATCACCGTCAACATAACAAGGAC TGCGCTGCCGTGTTGTTCGTTGCCGCTTTCTGCTACCGTGGTACATCGCG GGCGCCATTTGCATTTGGACGTGGCTTGGCATCAGGCGAATGGCGTCTAC AACCCACAGAAGCTCATGGGTGTCACCACCCTCGATGTGTGTCGTGCCCA GACTTTCATCGCAGAAAACCAGGGTGAGACTCAGGGCTAGTATGCATAGG ATTGGTGAAACGCTGGTTGGTGCAGAACCGCTCGCTTGCTGTTGGAGCTA TTGACGCGTCCGCTATCTGCAGCAATGCCTCCAAGTTCAACGCCAGTAGA TTCGTCAGTAGTGCAGAAGTACGCTTGATGACGATCCATGTAGAAGTACG CTTGATACGCGGCTAGGTTAAATTGCCATTACTTCTCCCGCGAGATGCAC TACTTGCGCGCACAGCACTACCAATGATGTGCATAGGGCATGCTCTACTT TTCAGAACGATATTCCGCCGCTTCAGATGGGCTGCGTTGTTGGGGTTATT TAGGCTTATTGCAGCCGCGATTTTTTCTGTGTAACACTGTTCGATGCACG CGTGCTTGCCGACAGGACATCGCGTGTGTATAACAATCGCCTCGGCTTGT TTCTGGCTTCGCGCTTGGAATCTCATGCATGTACATAATGCTGACGATGC TGTGGATATGTGGCCTATTGGCATCCACCATAGACCATGCTCGCCCGGCC TATGTTTACTGCACGAACAGGCATGGACGTGGACAAATTGGATGTGACGG TTATCGGAGGGCATGCGGGCACCACTATCATGCCCCTCTTGTCTCAGGTG AGATCGGTTTACTTCGGATAAGGTTTGCTCCAACAAGGCGATATGGAACT TAAGACGAACGTTAATGTTCCGTTCGAAGATACGATCGGAGTCCATCTCC TGCTTGGAATGAAAATTCCGTAGGTTCAGGACTTGATTTAACCTTTGAAT CCACAACATTTGCTGTTTGTATGGCAACTTGACTACAGGTGGAGGGAGCC AAGTTCTCGGACGAGGACATTAAGGCCTTGACCCACCGCATCCAGTTCGG CGGCGATGAGGTGGTCCAGGCGAAGGATGGGGCTGGCTCGGCTACCCTTT CCATGGTGAGTCCTTTCCCCCCCCGTTTTTTCTCACGACCCCGAAGAAAT CCTCAGAAACGGATCGTCCCACCCGCAACAAAACTAGATGCCTGTACAGG TTGCGATACTCGATGGTTGATTCACGCGTATGGGGCATCAAGCCTGTTCG TTTGGGGCTTTTACGTTCGACGTGTGTATCTCCGGACAGCGGGGCTTGCT TTTGAAGATATTCCGCGTTCAGTCCTGCTTATCGGCAAACGTACTTGGTC GTCTGGTGGAGTGGCAAAACACCTTTCACAGGTCGCTAACAAATATTAGG GGATTTACCGTTATACCGATATACCGGCCTTATGTCTTGCATTTCGTTCT TCTGCCTCCTGTCAGGCACACGCCGGTGCCTACTTCGCGGGCAAGGTTCT GGACGGGCTGAACGGCGTAGAGGGGGTGACGGAGTGCGCTTTCGTGGAGA GCGACCTGACGGAAGCCCCCTTCTTCGCATCGCCGGTGAGGCTTAAGCCT TGTTCCTACAGTACAGAACGCGCCGCTAATTAAGAACCTCTCCTTTTGCC CCAGGCCTGTTCCTTATTTTTGTCTACGGGGCACCCCCACGGCGACGGTA GACTTGATAGAGCACGTGTTCTGGTGGCCACGTTCTCAACTTCTAAATTG TTGAGTGGGTGACGCGTTCTGCACTGTACTTAACTCAGTATGCATATGTC GCTTGGAGTGTGAATGCCATGTTGTCTAGAGGATGAGTACTTGAGTATGC GAGTATTTTTCACCCTGTTCTCCCTTTGGGGGGAATAACCCGAAAGTTGC ACATTTTGGGTTTCGAGTATAGCCAACAATCGTGAAGTTAAGGGAAACAA CAAGTACAGTCCCCTCCCCAAAACTGCGCAAAGATGGCGTGGATGAATCT AGCCTACACCGTATCTTGACGATGTCTTACTTTCTTGTTGCCCGATGCAC CGCCCTGATGATCCCCCACCCCCTCCCCTCCCCTCGATCTCTTTTCTCTT TGATCTCTTCGGGGTTGTTTTTGTCTCCAGTGCACTTTGGGTAAGGACGG CGTGAGCAAGGTCCACGGGTTCGGCAACCTTTCGTCCTTCGAGCAAGCCC TCGTGGACGACAACGTACCAGCTCTCGTAAAGATGGCGCAGAAGGGCTCA GATTTCGTCAAGAACAACTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:285399..290269+

>mRNA_E-siliculosus-1a_M_contig8.16055.1 ID=mRNA_E-siliculosus-1a_M_contig8.16055.1|Name=mRNA_E-siliculosus-1a_M_contig8.16055.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2100bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:285399..290269+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGGCTGTTGCACGTATCCAGTTGGCGTCCAAGGTGGCTGCACCCAT
GGCATCTAAAGCTCTGGGTGTCTCTTCTTCCCGCTTCTTCACGGGCACGG
CACGTGCTCAGAACAAGATGTCGGCTGTTGCACGTATCCAGTTGGCGTCC
AAGGTGGCTGCACCCATGGCATCTAAAGCTCTGGGTGTCTCTTCTTCCCG
CTTCTTCACGGGCACGGCACGTGCTCAGAACAAGGTAACCGTCGTGGGTG
CCGCGGGCGGGATCGGGCAGCCCATGTCCCTTCTCCTCAAGCTGTCGGGG
AAGGTCGAACACCTGTCTCTCTTCGACATCGTCAACACGCCTGGCGTTGC
TGCCGACATCTCCCACTGCAACAGCAAGGGAAAGGTAACCGTCGTGGGTG
CCGCGGGCGGGATCGGGCAGCCCATGTCCCTTCTCCTCAAGCTGTCGGGG
AAGGTCGAACACCTGTCTCTCTTCGACATCGTCAACACGCCTGGCGTTGC
TGCCGACATCTCCCACTGCAACAGCAAGGGAAAGGTGACCGGGCACAAGG
GTGCCGAGGAAATGGCCACCGCATTGGACGGCGCAGACGTCGTGGTTATC
CCTGCGGGCGTGCCCCGCAAGCCAGGAATGACACGGTGACCGGGCACAAG
GGTGCCGAGGAAATGGCCACCGCATTGGACGGCGCAGACGTCGTGGTTAT
CCCTGCGGGCGTGCCCCGCAAGCCAGGAATGACACGTGACGACTTGTTCA
ACACCAACGCATCGATCGTCAAGGGCATCGCCGAACAGTGCTCCAAGAGC
TGCCCCAAGGCGTGCTTCCTCATCATCTCCAACCCCGTAAACTCGACCGT
GCCCATCTTCGCCGACGTGCTCAAGTGACGACTTGTTCAACACCAACGCA
TCGATCGTCAAGGGCATCGCCGAACAGTGCTCCAAGAGCTGCCCCAAGGC
GTGCTTCCTCATCATCTCCAACCCCGTAAACTCGACCGTGCCCATCTTCG
CCGACGTGCTCAAGGCGAATGGCGTCTACAACCCACAGAAGCTCATGGGT
GTCACCACCCTCGATGTGTGTCGTGCCCAGACTTTCATCGCAGAAAACCA
GGGCGAATGGCGTCTACAACCCACAGAAGCTCATGGGTGTCACCACCCTC
GATGTGTGTCGTGCCCAGACTTTCATCGCAGAAAACCAGGGCATGGACGT
GGACAAATTGGATGTGACGGTTATCGGAGGGCATGCGGGCACCACTATCA
TGCCCCTCTTGTCTCAGGCATGGACGTGGACAAATTGGATGTGACGGTTA
TCGGAGGGCATGCGGGCACCACTATCATGCCCCTCTTGTCTCAGGTGGAG
GGAGCCAAGTTCTCGGACGAGGACATTAAGGCCTTGACCCACCGCATCCA
GTTCGGCGGCGATGAGGTGGTCCAGGCGAAGGATGGGGCTGGCTCGGCTA
CCCTTTCCATGGTGGAGGGAGCCAAGTTCTCGGACGAGGACATTAAGGCC
TTGACCCACCGCATCCAGTTCGGCGGCGATGAGGTGGTCCAGGCGAAGGA
TGGGGCTGGCTCGGCTACCCTTTCCATGGCACACGCCGGTGCCTACTTCG
CGGGCAAGGTTCTGGACGGGCTGAACGGCGTAGAGGGGGTGACGGAGTGC
GCTTTCGTGGAGAGCGACCTGACGGAAGCCCCCTTCTTCGCATCGCCGGC
ACACGCCGGTGCCTACTTCGCGGGCAAGGTTCTGGACGGGCTGAACGGCG
TAGAGGGGGTGACGGAGTGCGCTTTCGTGGAGAGCGACCTGACGGAAGCC
CCCTTCTTCGCATCGCCGTGCACTTTGGGTAAGGACGGCGTGAGCAAGGT
CCACGGGTTCGGCAACCTTTCGTCCTTCGAGCAAGCCCTCGTGGACGACA
ACGTACCAGCTCTCGTAAAGATGGCGCAGAAGGGCTCAGATTTCGTCAAG
AACAACTAATGCACTTTGGGTAAGGACGGCGTGAGCAAGGTCCACGGGTT
CGGCAACCTTTCGTCCTTCGAGCAAGCCCTCGTGGACGACAACGTACCAG
CTCTCGTAAAGATGGCGCAGAAGGGCTCAGATTTCGTCAAGAACAACTAA
back to top