mRNA_E-siliculosus-1a_M_contig8.16047.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16047.1 vs. uniprot
Match: D8LQN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN1_ECTSI) HSP 1 Score: 2118 bits (5488), Expect = 0.000e+0 Identity = 1184/1266 (93.52%), Postives = 1205/1266 (95.18%), Query Frame = 1
Query: 31 DDGPESLENGLEIPGFPKPSKPEGFTGNLQGHLEKLSSNARSIHHVLETLCGGLDRLEKKMDTNSSQVEARLANIVHHISGEADEDTMSAWSSLAGGXXXXAGSPTELGTAPSLRRRGSFGMQMASCSEDPPFDFRNDKISLDEELANVGRGGDESEDVVTSFGGAVERAKDVTLKNEGGGRGEVERAAIITAPGNSSSAQATLKPTVVAAGLSAPETLENTDEHQNPSEAKDLSSISSPTDAGSPREEDRELPTGLVSGGEDTNDLHPPRRRSNQDDQSDGSNSKLNSARAE-GRNDNDVMVVSKQASSVDGESVLGEEAEGPGEGNDFVKTAFSPQASIDSRVLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETTEHLLVVNQLKDKSGSHTAQIKNLNEMVKELCKLLGMEEKFNGIVHATKKMMEEKFKSDMTELETRLASGHXXXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLENLKKAHQRRLSELRVQLESGTPAAGGAVPIETEPEETGEERMARLLKTAGTATEFLAEDLDKILDINGGNAGDATATAADNAEANHELGQVQSARSSDGNIDHALQELQHVSVTAVECSRLCNDIANAIGQAEGGEIGPDGGGAGSDDNADAAVRRAEALCGRIQDLLSAHEKNISSNKNKAELSATGEIERQGSLEGNGGVGLKLDDIVCPNGRKDLVQRLTATRDALLPVIGERSSVGSLRVALLGLTASVRTNLEEKQARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEGHHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEGQGGDSSRPRSAPPTNYDKENHNPETAGQEEGDLDASPSQANSRVMSGSLPSSALSTALGGXXXXXXXS-QGAVGGRRASFNEGASLIKDLMKKTSRLEQQMATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGATGEPPPGGHEGLHNNGDGSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSIAGAGTPRSPQKTKNQQPLKLTAAEEPGVDKNSRPGSPATTSPAVEDVGDVAGWGGGNSSVMIPGGASDMESAYGNGGKDAGARRRQXXXXXQHHRMDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSSGGRV 3822
DDGPESLE+GLEIPGFPKPSKPEGFTGNLQGHLEKLSSNARSIHHVLETLCGGLDRLEKKMDTNSSQVEARLANIVHHISGEADEDTMSAWSS+AGGXXXXAGSPT+LGTAPSLRRRGSFGMQMASCSED PFDFRNDKISLDEELANVGR GDESEDVVTSFGG VERAKDV L+NEGGGRGEVERAAI+TAPGNSSSAQATLKPTVVAAG SA ETLENTDEHQNPSEAKDLSSISSPTD GSPREEDRELPTGLVSGGEDTNDLHP RRRSNQDDQSDGSNSKLNSARAE GRND VMVVSKQ SSV GESVLGEEAE PGEGNDFVKTAFSPQASIDS VLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETTEHLLVVNQL+DKSGSHTAQIKNLNEMVKELCKLLGMEEKFNGIVHATKKM+EEKFKSDMTELETRLASGH XXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIG XXXXXXXXXXXXXXXXXXXX LENLKKAHQRRLSELRVQLESGTPAAGGAVPIETEPEET ERMARLLKTAGTATEFLAEDLDKILD NGGNAGDATATAADNAEANHELGQV SARSS N+DHALQEL+HVSV AVECSRLCND+A+A GQAE EIGPDGGGAGSD N DAAVRR EALCG IQDLLS +KNISS+KNKAELSATGEIERQGSLEGNGGVGLK+DDIVCPNGRKDLVQRLTA RDALLPVIGERSSVGSLRVA LGLTASVR NLEEKQARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEGHHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEG GGD SRPRSAPPTNYDKENHNPETAGQEEGDLDASPSQANSRV+SGSLPSSALSTALG XXXXXXX QGAVGGRRASFNEGASLIKDLMKKTSRLEQQMATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGG TGEPPPGGHEG HNNGDGSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLS+AGAGTPRSPQKT +QQ LKLTAAEEPG DKNSRPGSPATTSPAVEDVGDVAGWG G+S++MIPGGASDMESAYGNGGKDAGARRRQ QHH MDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSSGGR+
Sbjct: 39 DDGPESLEDGLEIPGFPKPSKPEGFTGNLQGHLEKLSSNARSIHHVLETLCGGLDRLEKKMDTNSSQVEARLANIVHHISGEADEDTMSAWSSIAGGXXXXAGSPTDLGTAPSLRRRGSFGMQMASCSEDSPFDFRNDKISLDEELANVGRDGDESEDVVTSFGGVVERAKDVALQNEGGGRGEVERAAILTAPGNSSSAQATLKPTVVAAGPSASETLENTDEHQNPSEAKDLSSISSPTDTGSPREEDRELPTGLVSGGEDTNDLHPQRRRSNQDDQSDGSNSKLNSARAEEGRND--VMVVSKQESSVGGESVLGEEAEVPGEGNDFVKTAFSPQASIDSGVLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETTEHLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKFNGIVHATKKMVEEKFKSDMTELETRLASGHRXXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIGEXXXXXXXXXXXXXXXXXXXXVDEDRLGSLENLKKAHQRRLSELRVQLESGTPAAGGAVPIETEPEETDAERMARLLKTAGTATEFLAEDLDKILDSNGGNAGDATATAADNAEANHELGQVLSARSSASNVDHALQELRHVSVNAVECSRLCNDVASASGQAERDEIGPDGGGAGSDSNVDAAVRRVEALCGHIQDLLSTQDKNISSSKNKAELSATGEIERQGSLEGNGGVGLKIDDIVCPNGRKDLVQRLTAARDALLPVIGERSSVGSLRVAFLGLTASVRANLEEKQARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEGHHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEGHGGDPSRPRSAPPTNYDKENHNPETAGQEEGDLDASPSQANSRVISGSLPSSALSTALGXXXXXXXXXXQGAVGGRRASFNEGASLIKDLMKKTSRLEQQMATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHNNGDGSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSMAGAGTPRSPQKTSSQQRLKLTAAEEPGADKNSRPGSPATTSPAVEDVGDVAGWGRGSSNMMIPGGASDMESAYGNGGKDAGARRRQKQQHRQHHEMDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSSGGRI 1302
BLAST of mRNA_E-siliculosus-1a_M_contig8.16047.1 vs. uniprot
Match: A0A6H5LPN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPN1_9PHAE) HSP 1 Score: 1935 bits (5012), Expect = 0.000e+0 Identity = 1140/1353 (84.26%), Postives = 1164/1353 (86.03%), Query Frame = 1
Query: 1 MSFSVSRFATDDGPESLENGLEIPGFPKPSKPEGFTGNLQGHLEKLSSNARSIHHVLETLCGGLDRLEKKMDTNSSQVEARLANIVHHISGEADEDTMSAWSSLAGGXXXXAGSPTELGTAPSLRRRGSFGMQMASCSEDPPFDFRNDKISLDEELANVGRGGDESEDVVTSFGGAVERAKDVTLKNEGGGRGEVERAAIITAPGNSSSAQATLKPTVVAAGLSAPETLENTDEHQNPSEAKDLSSISSPTDAGSPREEDRELPTGLVSGGEDTNDLHPPRRRSNQDDQSDGSNSKLNSARAE-GRNDNDVMVVSKQASSVDG----------------ESVLGEEAEGPGEGNDFVKTAFSPQASIDSRVLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETTEHLLVVNQLKDKSGSHTAQIKNLNEMVKELCKLLGMEEKFNGIVHATKKMMEEKFKSDMTELETRLASGHXXXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLENLKKAHQRRLSELRVQLESGTPAAGGAVPIETEPEETGEERMARLLKTAGTATEFLAEDLDKILDINGGNAGDATATAADNAEANHELGQVQSARSSDGNIDHALQELQHVSVTAVECSRLCNDIANAIGQAEGGEIGPDGGGAGSDDNADAAVRRAEALCGRIQDLLSAHEKNISSNKNKAELSATGEIERQGSLEGNGGVGLKLDDIVCPNGRKDLVQRLTATRDALLPVIGERSSVGSLRVALLGLTASVRTNLEEKQARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEGHHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEGQGGDSSRPRSAPPTNYDKENHNPETAGQEEGDLDASPSQANSRVMSGSLPSSALSTALGGXXXXXXXSQGAVGGRRASFNEGASLIKDLMKKTSRLEQQ--------------------------------------------------------------MATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGATGEPPPGGHEGLHNNGDGSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSIAGAGTPRSPQKTKNQQPLKLTAAEEPGVDKNSRPGSPATTSPAVEDVGDVAGWGGGNSSVMIPGGASDMESAYGNGGKDAGARRRQXXXXXQHHRMDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSSGGRV 3822
MSFSVSRFATDDGPESLE+GLEIPGFPKPSKP GF GNLQ HLEKLSSNA SIHHVLETLCGGLDRLEKK+DTNSSQVEARLANIVHHISGEADEDTMSAWSSLAGGXXXXAGSPTELGT PSLRRRGSFGMQMASC EDPPFDFRNDKISLDEELA VGRGGDESEDVVTSF G VERAKDV+LKNEGG RGEVERAAI+ PGNSSSAQATLK TVVA SA ETLE T EHQNPSEAK LSSI SPT+AGSPREEDR+LPTGLVSGGEDTNDLHPPRRRSNQDDQSDGSNSKLNSARAE GRND VMVVSKQASSV ESVLGEEAEGPGEGNDFVKTAFSPQASIDS VLDSR QRWIWAFGRICQLVRRRKRKQFEIMSQRATDR VRMGSRVSVVEKRLDETTE LLVVNQL+DKSGSHTAQIKNLNEMVKELCKLLGMEEK NGIVHATKK+MEEKFKSDMTELETR+ XXXXXXXXX KLEDMDDRYARSEEALRRAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELRVQLESGTPAAGGAVPIETEPEETGE+RMARLLKTA TATEFLAEDLDKILD NGGNAGDATATAA NAEANHELGQVQSARSSD NIDHALQEL+HVS+ AVECSRLCND+ANA GQAEG EIGPDGGGAGSD N DAAV RAEALCGRIQDLLSAHEKNISSNK KAELSAT EIERQGSLEGNGG+GLKLDDIVC NGRKDLVQRLTA RDALLPVIGERSSVGSLRV LLGLTASVR NLEEKQAR LMEERWNDLRGRVS L+TSVSDIKDSL DEGHHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNAR MAAVGA+SPRTGAGV EGQGGD SRPRS P T+YDKENHNPETAGQ EGDL+ASPSQANSRV+SGSLPSSALSTALG XXXXXXX QGAVGGRRAS NEGASLIKDLMKKTSRLEQQ MATKADNEEVMKAL+SVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGG TGEPPPGGHEG HNNGD SAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSIAGAGTPRSPQK K+QQ LKLTAAEEPG +KN+RPGSPATTSPAVEDVGDVAGWGG PGGASDMES YGNGGKDAGARR XXX Q H MDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSS GGR+
Sbjct: 1 MSFSVSRFATDDGPESLEDGLEIPGFPKPSKPGGFMGNLQEHLEKLSSNASSIHHVLETLCGGLDRLEKKVDTNSSQVEARLANIVHHISGEADEDTMSAWSSLAGGXXXXAGSPTELGTVPSLRRRGSFGMQMASCGEDPPFDFRNDKISLDEELAKVGRGGDESEDVVTSFEGVVERAKDVSLKNEGGRRGEVERAAILNTPGNSSSAQATLKTTVVATRPSASETLEKTVEHQNPSEAKYLSSIWSPTNAGSPREEDRDLPTGLVSGGEDTNDLHPPRRRSNQDDQSDGSNSKLNSARAEEGRND--VMVVSKQASSVXXXXXXXXXXXXXXXXXXESVLGEEAEGPGEGNDFVKTAFSPQASIDSGVLDSR----QRWIWAFGRICQLVRRRKRKQFEIMSQRATDRAVRMGSRVSVVEKRLDETTEQLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKINGIVHATKKLMEEKFKSDMTELETRIXXXXXXXXXXXXXXXXXXXXKLEDMDDRYARSEEALRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRVQLESGTPAAGGAVPIETEPEETGEDRMARLLKTASTATEFLAEDLDKILDNNGGNAGDATATAAGNAEANHELGQVQSARSSDSNIDHALQELRHVSIDAVECSRLCNDVANASGQAEGDEIGPDGGGAGSDHNVDAAVCRAEALCGRIQDLLSAHEKNISSNKKKAELSATFEIERQGSLEGNGGMGLKLDDIVCSNGRKDLVQRLTAARDALLPVIGERSSVGSLRVTLLGLTASVRANLEEKQARKLMEERWNDLRGRVSELNTSVSDIKDSLLDEGHHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNARTMAAVGALSPRTGAGVREGQGGDPSRPRSTPSTDYDKENHNPETAGQAEGDLEASPSQANSRVISGSLPSSALSTALGXXXXXXXXXQGAVGGRRASVNEGASLIKDLMKKTSRLEQQRLHERVLVMFHFSAMTVCCMFTPPLSLLPSWLGDATSRFDFFDFVLHPRPRYHAVWNPTVRKMATKADNEEVMKALSSVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHNNGDSSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSIAGAGTPRSPQKPKSQQRLKLTAAEEPGAEKNARPGSPATTSPAVEDVGDVAGWGGXXXXXXXPGGASDMESTYGNGGKDAGARRXXXXXHRQQHGMDQPPGRLEPLGANGEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSS-GGRI 1346 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16047.1 >prot_E-siliculosus-1a_M_contig8.16047.1 ID=prot_E-siliculosus-1a_M_contig8.16047.1|Name=mRNA_E-siliculosus-1a_M_contig8.16047.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1275bp MSFSVSRFATDDGPESLENGLEIPGFPKPSKPEGFTGNLQGHLEKLSSNAback to top mRNA from alignment at E-siliculosus-1a_M_contig8:232614..240404- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16047.1 ID=mRNA_E-siliculosus-1a_M_contig8.16047.1|Name=mRNA_E-siliculosus-1a_M_contig8.16047.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7791bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:232614..240404- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:232614..240404- >mRNA_E-siliculosus-1a_M_contig8.16047.1 ID=mRNA_E-siliculosus-1a_M_contig8.16047.1|Name=mRNA_E-siliculosus-1a_M_contig8.16047.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7650bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:232614..240404- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |