mRNA_E-siliculosus-1a_M_contig79.16014.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig79.16014.1
Unique NamemRNA_E-siliculosus-1a_M_contig79.16014.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: D8LTI0_ECTSI (DUF1736 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI0_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 1.940e-95
Identity = 242/696 (34.77%), Postives = 249/696 (35.78%), Query Frame = 1 
Query:    1 MSRAWPARGSVLLRRVPRWLSPAALFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVHAATCSSSVWLFREELPAVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALSLAIKGTSSRKQRESRNIGLKSPDRAELEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMETDESFRDLGLAPSIRDGEQEVVQLKSKPGESVVVRAGQSRQGEVTEVTAKKGVPHTGTQGLATSLSTTGPSPTSSAAAGGEKPIGSTTEEARYLTAACTDVGMAVDIGTLTTVAVDTSDNEGETFVTPALHCENSVAKTQEPVQNLLSGNNDLSSLDDTPGDDAGRTVAAEASVESSNDATSEAMGSIVTMETMKPPAIALEAPLRYVSSKGYNDPGEKGATAVHGRALVMAGSASCPPSPMGFNPAMTSNMVPGKGAPSMRNRAAIVVKEKDSGPGVTRYCAALLFAACATLCKEVGITVFGLMAGGEVVRFFEEREWRQRKRKLWHRRRSGVISTAGKHGIWRKQALLEYWRCRFMMRVPAAAAARVVSATIFAVLLVYLHVRLHEGARVREWGVLENNISILPRWVRSGFAYAPLH 2088
            MSRAWPA GSVLLRRVPRWLSPAALFI+SFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSW DIWRHDFWGQQIAHAESHKSFRPLTTVTFK                                                                                                         GR                                                                                                                                                           AGG                                                                                                                                                 G ALV   S +                   +GAPSM NRAAIV+KEKDSGPGVTRYCAALLFAA ATLCKEVGITVFGLMAGGEVVRFFEEREWRQRKRKLW RRRSGVISTA   GIWR+QAL EYWRCRFMMRVPAAAAARVVSATIFAVLLVYLHVRLHEGARVREWGVLEN+ISILP       +YA  H
Sbjct:    6 MSRAWPASGSVLLRRVPRWLSPAALFIISFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWGDIWRHDFWGQQIAHAESHKSFRPLTTVTFK---------------------------------------------------------------------------------------------------------GRI----------------------------------------------------------------------------------------------------------------------------------------------------------AGGS------------------------------------------------------------------------------------------------------------------------------------------------GIALVHRSSGAR------------------RGAPSMHNRAAIVMKEKDSGPGVTRYCAALLFAASATLCKEVGITVFGLMAGGEVVRFFEEREWRQRKRKLWQRRRSGVISTARSRGIWRRQALREYWRCRFMMRVPAAAAARVVSATIFAVLLVYLHVRLHEGARVREWGVLENDISILPSRTERALSYAFTH 280
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: A9UT00_MONBE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UT00_MONBE)

HSP 1 Score: 120 bits (301), Expect = 9.950e-25
Identity = 82/211 (38.86%), Postives = 101/211 (47.87%), Query Frame = 1 
Query:   46 VPRWLSPAALFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVHAATC---SSSVW-LF-REELPAVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALSLAIKGTSS 663
            VP +L  AA  I    +H  +L G FV+DD   VV N DV   +SW D+W HDFWG  +  A SHKS+RPLT  TFKLNN LA                                         G  P     AGFH  NV++H       +   W LF R+ LPA   +LLF VHP+H EAV  IVGRA++L G L + AL + +  T S
Sbjct:   56 VPVYLLVAAAAIA---VHLPSLQGDFVFDDARGVVANPDVRLDTSWSDLWAHDFWGTPMTAARSHKSYRPLTVATFKLNNLLA-----------------------------------------GMAP-----AGFHWGNVLLHTVASLMMARLAWHLFDRDRLPAAVTALLFAVHPIHTEAVCNIVGRAEILAGILYLTALLVVLNKTWS 217
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: A0A7S0K8L1_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K8L1_CAFRO)

HSP 1 Score: 109 bits (272), Expect = 7.040e-24
Identity = 73/210 (34.76%), Postives = 105/210 (50.00%), Query Frame = 1 
Query:   34 LLRRVPRW--LSPAALFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVH-AATCS---SSVWLFREELPAVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALSLA 645
            L   V RW  L    + +V+   +  TL  GFVWDDR A++GN DV   +SW ++ +HDFWGQ I   +SHKSFRP+TT TF++ ++L                                            G +  +A   H  N+++H  AT +   ++  +      A+AA+LLF VHPVHV+AVA +VGRA++L G     ALS+A
Sbjct:    8 LAAMVARWEALGLCGIALVTAAAYWPTLDAGFVWDDRAAILGNFDVLGQTSWSEMMKHDFWGQDIGAKDSHKSFRPVTTTTFRIEHWLE------------------------------------------GGGDSPNARMMHATNLLLHIVATLTVHEAARAMGTTSASALAAALLFGVHPVHVDAVASLVGRAEVLAGIF--FALSVA 173
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: A0A1B6C9I9_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6C9I9_9HEMI)

HSP 1 Score: 109 bits (273), Expect = 3.030e-23
Identity = 74/201 (36.82%), Postives = 104/201 (51.74%), Query Frame = 1 
Query:   73 LFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVHAATCSSSVWLFREELP-------AVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALSLAIKG 654
            L I+S   +  +L G FV+DD  A+V N D+ + +S+  ++++DFWG+++ H ESHKS+RP+T +TF+ N  LA                                  K E F+            FH  N+I+HAA  S S+++F+   P       +  ASL+F VHPVH EA+A IVGRADLLC F S  AL L  KG
Sbjct:   26 LAILSIISNSSSLNGEFVYDDSEAIVNNIDIKSSTSFWLLFQNDFWGRKLDHKESHKSYRPITIMTFRFNLDLAGG--------------------------------KLEPFS------------FHAVNLILHAAVTSLSLFVFQILFPDEYTQQLSFLASLIFAVHPVHTEAIAGIVGRADLLCTFFSFCALLLYAKG 182
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: A0A5A8E847_CAFRO (DUF1736 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E847_CAFRO)

HSP 1 Score: 110 bits (274), Expect = 4.380e-21
Identity = 69/214 (32.24%), Postives = 107/214 (50.00%), Query Frame = 1 
Query:   46 VPRW--LSPAALFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVH-AATCS---SSVWLFREELPAVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALSLAIKGTSSRK 669
            V RW  L    + +V+   +  TL  GFVWDDR A++GN DV   +SW ++ +HDFWGQ I   +SHKSFRP+TT TF++ ++L                                            G +  +A   H  N+++H  AT +   ++  +      A+AA+LLF VHPVHV+AVA +VGRA++L G    ++++   +  + R+
Sbjct:    2 VARWEALGLCGIALVTAAAYWPTLDAGFVWDDRAAILGNFDVLGQTSWSEMMKHDFWGQDIGAKDSHKSFRPVTTTTFRIEHWLE------------------------------------------GGGDSPNARMMHATNLLLHIVATLTVHEAARAMGTTSASALAAALLFGVHPVHVDAVASLVGRAEVLAGIFFALSVACYARSIAPRR 173
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: F0YQ59_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ59_AURAN)

HSP 1 Score: 100 bits (248), Expect = 5.820e-21
Identity = 66/193 (34.20%), Postives = 97/193 (50.26%), Query Frame = 1 
Query:   73 LFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSS-WEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVHAATCSSSVWL----FREELPAVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIAL 636
            +F ++  LH   +  G VWDDR AV  N+DV A ++ + ++W HD+WGQ ++  +SHKS+RPL T+TF+ N+ +                                          G  P      GFH  NV+VHA +C   + +     R+EL A+ A++ F  HP+H EAVA IVGRAD+L G L + A+
Sbjct:    2 VFGLALALHSNCVGNGVVWDDRAAVTYNKDVDASNAPYGNLWIHDYWGQPMSAVDSHKSWRPLATLTFRWNHAV-----------------------------------------HGFRP-----FGFHAANVVVHALSCVFFLGVARQALRDELGALLAAVAFVAHPIHSEAVASIVGRADVLGGCLCLGAV 148
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: A0A131YC84_RHIAP (O linked n acetylglucosamine transferase ogt n=1 Tax=Rhipicephalus appendiculatus TaxID=34631 RepID=A0A131YC84_RHIAP)

HSP 1 Score: 101 bits (251), Expect = 3.720e-20
Identity = 72/214 (33.64%), Postives = 95/214 (44.39%), Query Frame = 1 
Query:   46 VPRW---LSPAALFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVHAATCSSSVWLFREELP-----AVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALSLAIKGTSS 663
            VP+W   L P  +   S      +L G FV+DD  AVV N D+        I+  DFWG  +    SHKS+RPLTT+TFKLN  LA  +                                              A+ FH  NV++HA     S+ LFR  L      ++  +LLF VHPVH E+VA +VGRADLLC    +++    I+  SS
Sbjct:   35 VPKWAIRLGPWLVAGASLACFGHSLAGDFVFDDTEAVVHNVDIQPEIPLRRIFEDDFWGTDLQSESSHKSYRPLTTLTFKLNYMLAGGLV---------------------------------------------ASHFHAVNVVLHAFVSLLSLHLFRVLLQGAPRASLICALLFAVHPVHTESVAAVVGRADLLCAVFFILSFLSFIRSCSS 203
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: UPI001E1CF4DD (protein O-mannosyl-transferase TMTC2-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CF4DD)

HSP 1 Score: 106 bits (264), Expect = 6.740e-20
Identity = 68/194 (35.05%), Postives = 101/194 (52.06%), Query Frame = 1 
Query:   79 IVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERT---DAAGFHLFNVIVHAATCSSSVWLFRE----ELPAVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALS 639
            ++S  L+  TL  GFV+DD  AV+GN DV   + W  +W HDFWG  ++   SH S+RPLTT++F++N  +A+ ++   PD  +  ++  P      +   A              P       A+ FH FNV +HAA  ++ V + +         + A  LF  HPVHVEAVA +VGRA+LL      +AL+
Sbjct:  116 LLSLVLYLNTLHAGFVYDDHRAVLGNLDVLGSTPWWSVWGHDFWGSPLSRRGSHGSWRPLTTLSFRVNAAVARALA---PDYGLAGTEGHPAAVPPPTPPLAPSSAVPTPAVPSLTPSLNAAFSASTFHAFNVFLHAAVTAAYVGVLQGVGVGTWACLGAGSLFAAHPVHVEAVAGVVGRAELLAALAFCLALA 306
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: A0A3Q0FS62_ALLSI (transmembrane and TPR repeat-containing protein 4-like n=1 Tax=Alligator sinensis TaxID=38654 RepID=A0A3Q0FS62_ALLSI)

HSP 1 Score: 100 bits (248), Expect = 8.010e-20
Identity = 66/213 (30.99%), Postives = 96/213 (45.07%), Query Frame = 1 
Query:   46 VPRWLSPAALFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVHAATCSSSVWLFREELPAVA-----------------ASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIA 633
            +P + +   + ++SF     +  G FV+DD  A++ N+D+ A +   D+W HDFWG +++   SHKS+RPLT +TF+LN                                          FA G  P      GFH+ N+I+H+  C   V +F   L  +                  A+LLF VHPVH E VA IVGRADLLC    +++
Sbjct:   17 LPSYWAKIVVGLISFLCFANSYDGDFVFDDSEAIINNKDLRAETPLGDLWHHDFWGSKLSSNTSHKSYRPLTVLTFRLNYL----------------------------------------FAGGFHP-----VGFHVINIILHSIICVLMVDVFSILLGGLQYSSKGRRLNLAPRASPLAALLFAVHPVHTECVAGIVGRADLLCALFFLLS 184
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BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Match: A0A7S3ZYJ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYJ5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.180e-20
Identity = 68/200 (34.00%), Postives = 98/200 (49.00%), Query Frame = 1 
Query:   70 ALFIVSFGLHHETLLGGFVWDDRPAVVGNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQKISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAGFHLFNVIVHAATCSSSVWLFR-----EELPAVAASLLFTVHPVHVEAVAPIVGRADLLCGFLSVIALSLAIKG 654
            A F++S  LH  ++  G VWDDR +V  N+DV  G    D   HD+WGQ +A  +SHKS+RPL T +F++N  +                                          G  P      G+HL NV++HA +C+  + + R     +E  A  A+L+F VHP H E VA +VGRAD+L GFL++ A+ L  +G
Sbjct:   21 AAFLLSLALHVNSVRNGVVWDDRASVTYNKDVATGP---DYLNHDYWGQPMAAPDSHKSWRPLATWSFRMNYLV-----------------------------------------HGYAP-----LGYHLVNVLLHACSCALMLSVARNAFRKDETSARLATLIFVVHPTHSEPVASVVGRADVLGGFLALFAIVLYQRG 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig79.16014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTI0_ECTSI1.940e-9534.77DUF1736 domain-containing protein n=1 Tax=Ectocarp... [more]
A9UT00_MONBE9.950e-2538.86Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A7S0K8L1_CAFRO7.040e-2434.76Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A1B6C9I9_9HEMI3.030e-2336.82Uncharacterized protein (Fragment) n=1 Tax=Clastop... [more]
A0A5A8E847_CAFRO4.380e-2132.24DUF1736 domain-containing protein n=5 Tax=Cafeteri... [more]
F0YQ59_AURAN5.820e-2134.20Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A131YC84_RHIAP3.720e-2033.64O linked n acetylglucosamine transferase ogt n=1 T... [more]
UPI001E1CF4DD6.740e-2035.05protein O-mannosyl-transferase TMTC2-like n=1 Tax=... [more]
A0A3Q0FS62_ALLSI8.010e-2030.99transmembrane and TPR repeat-containing protein 4-... [more]
A0A7S3ZYJ5_9STRA9.180e-2034.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig79contigE-siliculosus-1a_M_contig79:649508..653342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size2097
Model size2097
Exons6
Ec32 orthologEc-02_005690.1
Ec32 ortholog descriptionDomain of unknown function DUF1736
Hectar predicted targeting categorymitochondrion
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0457@1,KOG1124@2759
EggNOG free text desc.cellular component assembly
Seed eggNOG ortholog2880.D8LTI0
Seed ortholog evalue3.2e-82
Seed ortholog score313.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig79.16014.1prot_E-siliculosus-1a_M_contig79.16014.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig79 649508..653342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936148.5342193-CDS-E-siliculosus-1a_M_contig79:649507..6510311622936148.5342193-CDS-E-siliculosus-1a_M_contig79:649507..651031Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 649508..651031 -
1696250950.189846-CDS-E-siliculosus-1a_M_contig79:649507..6510311696250950.189846-CDS-E-siliculosus-1a_M_contig79:649507..651031Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 649508..651031 -
1622936148.5518048-CDS-E-siliculosus-1a_M_contig79:651266..6513281622936148.5518048-CDS-E-siliculosus-1a_M_contig79:651266..651328Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 651267..651328 -
1696250950.203244-CDS-E-siliculosus-1a_M_contig79:651266..6513281696250950.203244-CDS-E-siliculosus-1a_M_contig79:651266..651328Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 651267..651328 -
1622936148.5699167-CDS-E-siliculosus-1a_M_contig79:651533..6517691622936148.5699167-CDS-E-siliculosus-1a_M_contig79:651533..651769Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 651534..651769 -
1696250950.213586-CDS-E-siliculosus-1a_M_contig79:651533..6517691696250950.213586-CDS-E-siliculosus-1a_M_contig79:651533..651769Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 651534..651769 -
1622936148.582928-CDS-E-siliculosus-1a_M_contig79:652257..6523851622936148.582928-CDS-E-siliculosus-1a_M_contig79:652257..652385Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 652258..652385 -
1696250950.2265432-CDS-E-siliculosus-1a_M_contig79:652257..6523851696250950.2265432-CDS-E-siliculosus-1a_M_contig79:652257..652385Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 652258..652385 -
1622936148.594996-CDS-E-siliculosus-1a_M_contig79:652842..6529361622936148.594996-CDS-E-siliculosus-1a_M_contig79:652842..652936Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 652843..652936 -
1696250950.243413-CDS-E-siliculosus-1a_M_contig79:652842..6529361696250950.243413-CDS-E-siliculosus-1a_M_contig79:652842..652936Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 652843..652936 -
1622936148.6334398-CDS-E-siliculosus-1a_M_contig79:653289..6533421622936148.6334398-CDS-E-siliculosus-1a_M_contig79:653289..653342Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 653290..653342 -
1696250950.2563133-CDS-E-siliculosus-1a_M_contig79:653289..6533421696250950.2563133-CDS-E-siliculosus-1a_M_contig79:653289..653342Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig79 653290..653342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig79.16014.1

>prot_E-siliculosus-1a_M_contig79.16014.1 ID=prot_E-siliculosus-1a_M_contig79.16014.1|Name=mRNA_E-siliculosus-1a_M_contig79.16014.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=699bp
MSRAWPARGSVLLRRVPRWLSPAALFIVSFGLHHETLLGGFVWDDRPAVV
GNQDVWAGSSWEDIWRHDFWGQQIAHAESHKSFRPLTTVTFKLNNFLAQK
ISREQPDNTITFSDQQPNDENVNSMTTAEFVEKREDFARGAGPERTDAAG
FHLFNVIVHAATCSSSVWLFREELPAVAASLLFTVHPVHVEAVAPIVGRA
DLLCGFLSVIALSLAIKGTSSRKQRESRNIGLKSPDRAELEDDQQEQSSR
RPPCYFGSGSSSSSSSSSSSSSSSAMETDESFRDLGLAPSIRDGEQEVVQ
LKSKPGESVVVRAGQSRQGEVTEVTAKKGVPHTGTQGLATSLSTTGPSPT
SSAAAGGEKPIGSTTEEARYLTAACTDVGMAVDIGTLTTVAVDTSDNEGE
TFVTPALHCENSVAKTQEPVQNLLSGNNDLSSLDDTPGDDAGRTVAAEAS
VESSNDATSEAMGSIVTMETMKPPAIALEAPLRYVSSKGYNDPGEKGATA
VHGRALVMAGSASCPPSPMGFNPAMTSNMVPGKGAPSMRNRAAIVVKEKD
SGPGVTRYCAALLFAACATLCKEVGITVFGLMAGGEVVRFFEEREWRQRK
RKLWHRRRSGVISTAGKHGIWRKQALLEYWRCRFMMRVPAAAAARVVSAT
IFAVLLVYLHVRLHEGARVREWGVLENNISILPRWVRSGFAYAPLHNL*
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mRNA from alignment at E-siliculosus-1a_M_contig79:649508..653342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig79.16014.1 ID=mRNA_E-siliculosus-1a_M_contig79.16014.1|Name=mRNA_E-siliculosus-1a_M_contig79.16014.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3835bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig79:649508..653342- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTCGTGCCTGGCCGGCCAGGGGGTCGGTGCTGCTGCGACGGGTGCC
CAGGTGAAGCCTTACCGCCGTAAACGGATCGAGGAGAGAAAGATCTGGAG
GATACACGACCAGATATCCAGAGAGGATTGCCCCGCCACAGCAGTATCGA
CTTGTCGTTGGTTCGTGAAAATGATGCAAAGTACCGTAGCATCACAGAAG
GACTGCCCACTCTCGGGATTTAGTTTGGGTTGACGGCGGGATATACCTTT
ACCTGTGTGAAGGAAAACACGATGCGGTGCCTCTCCGTTCGTTCGACCCA
CAATAGCGGGGCGGTGGTCGGTGTGGCAACAAATACCTCGCTATTACTAC
TACAGTATACACAATACACACCTGCATGTCAATGGTTGCACTCTTGTTTA
ACCCAGGTGGTTGTCGCCAGCTGCTTTGTTCATCGTTTCGTTCGGTCTTC
ACCACGAAACGCTTTTGGGCGGGTTTGTGTGGGACGATCGACCTGCGGTG
GTGAGAGAAAGAAGCAGCTCCTACATAGTTTTCGCGTCATTTAACATTAG
CGAAGTGTATGTAGTCTTCTTGTAATTCATTTCCTACGGGCACAGAGTGC
CTACACCACACACTACGTGCAGTAACGGGTGCGCCTGTCGCCGTGCGTTG
GCGGTATATTTTACAATATGCACCGTCGCTCTACACGATGTCATACGAAT
GGTACAATGTGGTACATCTTGCTGAAAGTCACATCGTCTTTGCCCCCCGA
ACTATAGGACTAACCACATGTCAATGTTCTTGGTCACCACCAGCCATAAG
ACACACTCAAGAGAGCACAATTGACGTGCTTGAAATACAGTAGGCGTTCG
TGTCTCGACATTTTCCACCTGTTTCACGGTTGTCACCACACTACCCTTCG
CCAACGAGGTTCACCTACACATGAATTTGTGCGTCTTACAATGGCGTTCC
TAACAAGGTGGGAAACCAGGATGTGTGGGCCGGATCATCTTGGGAAGACA
TTTGGCGTCACGACTTCTGGGGCCAGCAGATAGCCCATGCTGAGAGCCAT
AAAAGTTTTCGGCCGCTTACCACCGTCACGTTCAAGTACGTGCTGATATG
CGGTGATACCGTGTCATGTATGTAGTGGTGAAGTACGGTGATTACATTTG
AGCGTAAGTTTTCGCAAAGTGGCTCGGGCATGAGCTCCGCTCACGGTTGT
TTGTCGTGTGTTTCTCGTCACAGCAAAGTTGTTTGAAGCGTCCCGTTTTC
GTTGGGAACCCTTGCGTCGTACGTGCGTGCTCTCACAGCCTTCCTCGGAC
AAAGCATCCCTGGTATCATAGGAGATAAAACCCTCACTGTTCGCGCACTA
CACACAACTTCACGCGTGCTTTACTTCGTCCACCTTTGGACAGAATATGT
TGCTCGCAAGCCATGAGAGCTTCTGCTTTGACGCAATGGTTGCTCAGTCG
CTCATTTGTGTGCATGTCGTAGCAGTCAAGAGGGGGACGCATGTTGCGAC
AACACTCCTAGATCTCTTCCCCTCCGGGAGGGTCACCAGCACCCATCAAA
GACCGCACCTGTGTCGCCTCCAGGTTGAACAACTTTCTTGCTCAAAAGAT
ATCCCGAGAGCAACCAGACAACACTATCACTTTCAGCGATCAGCAGCCGA
ATGATGAAAACGTCAACTCGATGACAACGGCGGAATTCGTGGAGAAGAGG
GAAGATTTCGCCAGAGGAGCCGGCCCAGAGCGCACCGATGCCGCCGGCTT
CCATCTGTTCAACGTCATCGTACACGCGGCTACCTGTTCTTCCTCGGTTT
GGCTCTTCCGTACCATTTTTGAAGGCAAGATCAATGAAACTACCCAGTGC
CTGTTGAATGTTTTAAGATTGAGGCATCCTGTTTCGCACCTGGCCGAAAA
CTAGCTTACCCTCACCCTTTCTCAAAGAAAACGCTCTTAGTGTTCGTGAA
CATTTTCATGAGAACGGTGTGCTTCCTGTCTTGTGTGCCCTTGTTCCTGT
CATCACCATCGCAGGGGAAGAATTGCCGGCGGTAGCGGCATCGCTCTTGT
TCACCGTTCATCCGGTGCACGTCGAGGTGGGAGCTGTAGCACGTACCCTA
TGAATGTGGTTGGCGTAGGTTGACGGGCTCCTCGATCGATGTATGATGCT
CAGATTCCCGCATGAGGGAAAATACGATGAAGAGTTACGAAAGAAGCTGG
TTCCGGTCTACGTGCAGAAAACATTTGCTTCCATTCTACTAGAGAACCTT
GTTCACGCTCGAACCCTCCCGAACACATTGCGTATGATTCAACGTGCCAA
ACTGAAAAAAGGCGGTGGCCCCGATTGTCGGAAGGGCCGATCTTCTGTGC
GGCTTCCTCTCGGTAATAGCTCTGTCTTTGGCTATCAAGGGAACTTCCTC
GAGGAAACAAAGGGAAAGCAGAAACATTGGGCTTAAATCTCCCGACCGTG
CTGAATTGGAAGACGACCAACAAGAGCAGAGCAGTCGCCGCCCACCCTGC
TACTTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTGCCATGGAGACTGATGAGAGTTTTAGGGACCTTGGATTGG
CACCAAGTATCCGCGATGGCGAACAGGAAGTCGTACAACTCAAATCGAAA
CCGGGGGAGAGCGTTGTGGTCAGAGCGGGACAGTCTCGGCAAGGCGAGGT
CACCGAGGTAACGGCGAAAAAAGGGGTCCCACACACGGGGACTCAAGGGC
TTGCTACGTCGCTCTCGACGACTGGACCGTCGCCGACCTCCTCTGCCGCC
GCTGGAGGCGAGAAACCGATTGGGTCGACGACTGAAGAAGCAAGGTATCT
CACGGCGGCTTGCACGGATGTTGGAATGGCGGTGGACATCGGCACCCTTA
CGACAGTCGCGGTCGATACCAGTGACAACGAAGGAGAGACTTTTGTGACC
CCGGCCTTACACTGCGAAAACTCGGTCGCCAAAACACAAGAACCAGTGCA
AAATCTGCTATCTGGCAACAACGATTTGTCCAGCCTCGATGATACCCCCG
GCGACGACGCTGGGCGCACTGTCGCCGCTGAAGCATCGGTCGAAAGCAGC
AACGACGCTACGTCAGAAGCTATGGGCAGTATTGTTACGATGGAAACGAT
GAAACCACCAGCAATAGCTCTAGAAGCACCTCTTAGATATGTTTCCAGCA
AAGGATACAATGACCCAGGGGAGAAAGGGGCTACTGCTGTGCACGGGCGG
GCATTGGTAATGGCGGGAAGCGCTTCTTGTCCCCCTTCCCCTATGGGCTT
TAATCCTGCCATGACCTCGAACATGGTTCCGGGGAAAGGAGCTCCCTCGA
TGCGTAACAGAGCTGCTATCGTCGTGAAGGAGAAAGACAGCGGGCCTGGA
GTGACGAGGTATTGTGCAGCGCTTCTCTTCGCCGCCTGTGCAACGCTGTG
CAAGGAGGTAGGCATCACGGTGTTCGGGCTCATGGCCGGAGGGGAGGTTG
TGCGCTTCTTCGAAGAGCGCGAGTGGCGGCAGCGAAAGCGGAAGCTGTGG
CATCGTCGGCGATCGGGGGTCATATCAACAGCGGGGAAGCATGGGATTTG
GCGGAAACAGGCGTTACTGGAATATTGGCGCTGCCGGTTTATGATGCGGG
TACCGGCGGCTGCGGCTGCGAGAGTCGTGTCAGCGACAATCTTTGCCGTG
TTGCTGGTGTATCTACACGTACGATTGCACGAGGGGGCGCGGGTTCGAGA
GTGGGGGGTTCTAGAAAACAACATTTCAATTTTGCCAAGGTGGGTGCGCT
CGGGCTTCGCTTATGCCCCCCTTCACAACCTCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig79:649508..653342-

>mRNA_E-siliculosus-1a_M_contig79.16014.1 ID=mRNA_E-siliculosus-1a_M_contig79.16014.1|Name=mRNA_E-siliculosus-1a_M_contig79.16014.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4194bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig79:649508..653342- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTCGTGCCTGGCCGGCCAGGGGGTCGGTGCTGCTGCGACGGGTGCC
CAGATGTCTCGTGCCTGGCCGGCCAGGGGGTCGGTGCTGCTGCGACGGGT
GCCCAGGTGGTTGTCGCCAGCTGCTTTGTTCATCGTTTCGTTCGGTCTTC
ACCACGAAACGCTTTTGGGCGGGTTTGTGTGGGACGATCGACCTGCGGTG
GTGGTTGTCGCCAGCTGCTTTGTTCATCGTTTCGTTCGGTCTTCACCACG
AAACGCTTTTGGGCGGGTTTGTGTGGGACGATCGACCTGCGGTGGTGGGA
AACCAGGATGTGTGGGCCGGATCATCTTGGGAAGACATTTGGCGTCACGA
CTTCTGGGGCCAGCAGATAGCCCATGCTGAGAGCCATAAAAGTTTTCGGC
CGCTTACCACCGTCACGTTCAAGTGGGAAACCAGGATGTGTGGGCCGGAT
CATCTTGGGAAGACATTTGGCGTCACGACTTCTGGGGCCAGCAGATAGCC
CATGCTGAGAGCCATAAAAGTTTTCGGCCGCTTACCACCGTCACGTTCAA
GTTGAACAACTTTCTTGCTCAAAAGATATCCCGAGAGCAACCAGACAACA
CTATCACTTTCAGCGATCAGCAGCCGAATGATGAAAACGTCAACTCGATG
ACAACGGCGGAATTCGTGGAGAAGAGGGAAGATTTCGCCAGAGGAGCCGG
CCCAGAGCGCACCGATGCCGCCGGCTTCCATCTGTTCAACGTCATCGTAC
ACGCGGCTACCTGTTCTTCCTCGGTTTGGCTCTTCCGTTGAACAACTTTC
TTGCTCAAAAGATATCCCGAGAGCAACCAGACAACACTATCACTTTCAGC
GATCAGCAGCCGAATGATGAAAACGTCAACTCGATGACAACGGCGGAATT
CGTGGAGAAGAGGGAAGATTTCGCCAGAGGAGCCGGCCCAGAGCGCACCG
ATGCCGCCGGCTTCCATCTGTTCAACGTCATCGTACACGCGGCTACCTGT
TCTTCCTCGGTTTGGCTCTTCCGGGAAGAATTGCCGGCGGTAGCGGCATC
GCTCTTGTTCACCGTTCATCCGGTGCACGTCGAGGGGAAGAATTGCCGGC
GGTAGCGGCATCGCTCTTGTTCACCGTTCATCCGGTGCACGTCGAGGCGG
TGGCCCCGATTGTCGGAAGGGCCGATCTTCTGTGCGGCTTCCTCTCGGTA
ATAGCTCTGTCTTTGGCTATCAAGGGAACTTCCTCGAGGAAACAAAGGGA
AAGCAGAAACATTGGGCTTAAATCTCCCGACCGTGCTGAATTGGAAGACG
ACCAACAAGAGCAGAGCAGTCGCCGCCCACCCTGCTACTTCGGCAGCGGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGCCAT
GGAGACTGATGAGAGTTTTAGGGACCTTGGATTGGCACCAAGTATCCGCG
ATGGCGAACAGGAAGTCGTACAACTCAAATCGAAACCGGGGGAGAGCGTT
GTGGTCAGAGCGGGACAGTCTCGGCAAGGCGAGGTCACCGAGGTAACGGC
GAAAAAAGGGGTCCCACACACGGGGACTCAAGGGCTTGCTACGTCGCTCT
CGACGACTGGACCGTCGCCGACCTCCTCTGCCGCCGCTGGAGGCGAGAAA
CCGATTGGGTCGACGACTGAAGAAGCAAGGTATCTCACGGCGGCTTGCAC
GGATGTTGGAATGGCGGTGGACATCGGCACCCTTACGACAGTCGCGGTCG
ATACCAGTGACAACGAAGGAGAGACTTTTGTGACCCCGGCCTTACACTGC
GAAAACTCGGTCGCCAAAACACAAGAACCAGTGCAAAATCTGCTATCTGG
CAACAACGATTTGTCCAGCCTCGATGATACCCCCGGCGACGACGCTGGGC
GCACTGTCGCCGCTGAAGCATCGGTCGAAAGCAGCAACGACGCTACGTCA
GAAGCTATGGGCAGTATTGTTACGATGGAAACGATGAAACCACCAGCAAT
AGCTCTAGAAGCACCTCTTAGATATGTTTCCAGCAAAGGATACAATGACC
CAGGGGAGAAAGGGGCTACTGCTGTGCACGGGCGGGCATTGGTAATGGCG
GGAAGCGCTTCTTGTCCCCCTTCCCCTATGGGCTTTAATCCTGCCATGAC
CTCGAACATGGTTCCGGGGAAAGGAGCTCCCTCGATGCGTAACAGAGCTG
CTATCGTCGTGAAGGAGAAAGACAGCGGGCCTGGAGTGACGAGGTATTGT
GCAGCGCTTCTCTTCGCCGCCTGTGCAACGCTGTGCAAGGAGGTAGGCAT
CACGGTGTTCGGGCTCATGGCCGGAGGGGAGGTTGTGCGCTTCTTCGAAG
AGCGCGAGTGGCGGCAGCGAAAGCGGAAGCTGTGGCATCGTCGGCGATCG
GGGGTCATATCAACAGCGGGGAAGCATGGGATTTGGCGGAAACAGGCGTT
ACTGGAATATTGGCGCTGCCGGTTTATGATGCGGGTACCGGCGGCTGCGG
CTGCGAGAGTCGTGTCAGCGACAATCTTTGCCGTGTTGCTGGTGTATCTA
CACGTACGATTGCACGAGGGGGCGCGGGTTCGAGAGTGGGGGGTTCTAGA
AAACAACATTTCAATTTTGCCAAGGTGGGTGCGCTCGGGCTTCGCTTATG
CCCCCCTTCACAACCTCTAAGCGGTGGCCCCGATTGTCGGAAGGGCCGAT
CTTCTGTGCGGCTTCCTCTCGGTAATAGCTCTGTCTTTGGCTATCAAGGG
AACTTCCTCGAGGAAACAAAGGGAAAGCAGAAACATTGGGCTTAAATCTC
CCGACCGTGCTGAATTGGAAGACGACCAACAAGAGCAGAGCAGTCGCCGC
CCACCCTGCTACTTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTGCCATGGAGACTGATGAGAGTTTTAGGGACC
TTGGATTGGCACCAAGTATCCGCGATGGCGAACAGGAAGTCGTACAACTC
AAATCGAAACCGGGGGAGAGCGTTGTGGTCAGAGCGGGACAGTCTCGGCA
AGGCGAGGTCACCGAGGTAACGGCGAAAAAAGGGGTCCCACACACGGGGA
CTCAAGGGCTTGCTACGTCGCTCTCGACGACTGGACCGTCGCCGACCTCC
TCTGCCGCCGCTGGAGGCGAGAAACCGATTGGGTCGACGACTGAAGAAGC
AAGGTATCTCACGGCGGCTTGCACGGATGTTGGAATGGCGGTGGACATCG
GCACCCTTACGACAGTCGCGGTCGATACCAGTGACAACGAAGGAGAGACT
TTTGTGACCCCGGCCTTACACTGCGAAAACTCGGTCGCCAAAACACAAGA
ACCAGTGCAAAATCTGCTATCTGGCAACAACGATTTGTCCAGCCTCGATG
ATACCCCCGGCGACGACGCTGGGCGCACTGTCGCCGCTGAAGCATCGGTC
GAAAGCAGCAACGACGCTACGTCAGAAGCTATGGGCAGTATTGTTACGAT
GGAAACGATGAAACCACCAGCAATAGCTCTAGAAGCACCTCTTAGATATG
TTTCCAGCAAAGGATACAATGACCCAGGGGAGAAAGGGGCTACTGCTGTG
CACGGGCGGGCATTGGTAATGGCGGGAAGCGCTTCTTGTCCCCCTTCCCC
TATGGGCTTTAATCCTGCCATGACCTCGAACATGGTTCCGGGGAAAGGAG
CTCCCTCGATGCGTAACAGAGCTGCTATCGTCGTGAAGGAGAAAGACAGC
GGGCCTGGAGTGACGAGGTATTGTGCAGCGCTTCTCTTCGCCGCCTGTGC
AACGCTGTGCAAGGAGGTAGGCATCACGGTGTTCGGGCTCATGGCCGGAG
GGGAGGTTGTGCGCTTCTTCGAAGAGCGCGAGTGGCGGCAGCGAAAGCGG
AAGCTGTGGCATCGTCGGCGATCGGGGGTCATATCAACAGCGGGGAAGCA
TGGGATTTGGCGGAAACAGGCGTTACTGGAATATTGGCGCTGCCGGTTTA
TGATGCGGGTACCGGCGGCTGCGGCTGCGAGAGTCGTGTCAGCGACAATC
TTTGCCGTGTTGCTGGTGTATCTACACGTACGATTGCACGAGGGGGCGCG
GGTTCGAGAGTGGGGGGTTCTAGAAAACAACATTTCAATTTTGCCAAGGT
GGGTGCGCTCGGGCTTCGCTTATGCCCCCCTTCACAACCTCTAA
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