mRNA_E-siliculosus-1a_M_contig783.15943.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig783.15943.1
Unique NamemRNA_E-siliculosus-1a_M_contig783.15943.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI)

HSP 1 Score: 561 bits (1446), Expect = 2.110e-202
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIA 816
            MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIA
Sbjct:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIA 272          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyceae TaxID=2870 RepID=COX3_PYLLI)

HSP 1 Score: 520 bits (1338), Expect = 6.170e-186
Identity = 246/270 (91.11%), Postives = 256/270 (94.81%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNV 810
            MK+ AKM+QRHPFHLVDPSPWPLVAA GGLSLTFGGVLFMHNY GGGELLCLG FTILYVMFTWWRD+IREALFEGQHT AVQQGLRMGMILFIVSE+MFFFAF WAFFTSSISPVFNIGGVWPPTD++AISPWGLPF+NTILLLSSGASVTWAHHAIVGG KKEAMQGL +TL FAIAFTAMQGFEYS APF MSDGVYGSVFYMATGFHGFHVIIGTIFL ICTIRL+L HFS QHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFN+
Sbjct:    1 MKSTAKMIQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILYVMFTWWRDVIREALFEGQHTLAVQQGLRMGMILFIVSEIMFFFAFXWAFFTSSISPVFNIGGVWPPTDVVAISPWGLPFLNTILLLSSGASVTWAHHAIVGGLKKEAMQGLSVTLAFAIAFTAMQGFEYSGAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLFICTIRLYLSHFSCQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNI 270          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE)

HSP 1 Score: 506 bits (1302), Expect = 1.900e-180
Identity = 241/272 (88.60%), Postives = 254/272 (93.38%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIA 816
            MK+K KM+QRHPFHLVDPSPWPLVAA GGL LTFGGVLFMHNY GGG+LL LGV TILYVMFTWWRDIIREA FEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPP  I AISPWGLPF+NTILLLSSGASVTWAHHAIVGGFKKEA+QGLG+TL FA+AFTA+QGFEY  APF+MSDGVYGSVFYMATGFHGFHVIIGTIFL+ICT+RL+  HFSRQ HFGFEAAAWYWHFVDVVWLFLF+TIYWWGFNVI 
Sbjct:    1 MKSKIKMIQRHPFHLVDPSPWPLVAALGGLCLTFGGVLFMHNYNGGGQLLSLGVITILYVMFTWWRDIIREAAFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPIGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLGVTLAFAVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWGFNVIV 272          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: A0A2R4QQ89_9PHAE (Cytochrome c oxidase subunit 3 n=8 Tax=Fucales TaxID=3009 RepID=A0A2R4QQ89_9PHAE)

HSP 1 Score: 482 bits (1241), Expect = 3.750e-171
Identity = 228/271 (84.13%), Postives = 248/271 (91.51%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI 813
            MK+++K++QRHPFHLVDPSPWP VAA GGLSLTFGGVL+MHNY GGG+LL LGV TILYVMFTWWRDIIREALFEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+ I AISPWGLP +NTI+LLSSGASVTWAHHAIV G KKEA+ GL +T  FA+ FT +QGFEY +APFSMSD VYGSVF+MATGFHGFHVIIGTIFL ICT RL+L HFSRQ HFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNV+
Sbjct:    1 MKSQSKLIQRHPFHLVDPSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGVLTILYVMFTWWRDIIREALFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVV 271          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: A0A0U1V199_SARFS (Cytochrome c oxidase subunit 3 n=199 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1V199_SARFS)

HSP 1 Score: 481 bits (1239), Expect = 7.570e-171
Identity = 228/272 (83.82%), Postives = 247/272 (90.81%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIA 816
            M+ +AK VQRHPFHLVDPSPWP VAA GGLS TFGGVL+MHNY GGG+LLCLG+ TILYVMFTWWRD+IREA FEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS+SPVFNIGGVWPP  I AISPWGLP +NTI+LLSSGASVTW+HHAIVGGFK+EA+ GL IT+ FA+ FTA+QGFEY  APF+MSD VYGSVF+MATGFHGFHVIIGTIFL +CT RL+L HFSRQ HFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI 
Sbjct:    1 MREQAKTVQRHPFHLVDPSPWPFVAALGGLSSTFGGVLYMHNYDGGGQLLCLGLITILYVMFTWWRDVIREASFEGQHTAAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWSHHAIVGGFKREALLGLVITILFAVIFTALQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLCVCTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIV 272          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: A0A3Q9Y3F9_SCYLO (Cytochrome c oxidase subunit 3 (Fragment) n=88 Tax=Ectocarpales TaxID=2877 RepID=A0A3Q9Y3F9_SCYLO)

HSP 1 Score: 466 bits (1198), Expect = 5.010e-165
Identity = 226/245 (92.24%), Postives = 232/245 (94.69%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAA 735
            MKAK KMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNY GGGELLCLGV TILYVMFTWWRDIIREALFEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPT I+AISPWGLPFVNTILLLSSGASVTWAHHAI+ GFKKEAM GL ITL FA+AFTAMQ FEY+ APFSMSDGVYGSVFYMATGFHGFHVIIGTIFL+ICTIRL+  HFSRQHHFGFEAA
Sbjct:    1 MKAKIKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYEGGGELLCLGVVTILYVMFTWWRDIIREALFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTHIVAISPWGLPFVNTILLLSSGASVTWAHHAIIAGFKKEAMLGLNITLMFAVAFTAMQAFEYAGAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTIRLYFDHFSRQHHFGFEAA 245          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: A0A0A7LG50_SACLA (Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina latissima TaxID=309358 RepID=A0A0A7LG50_SACLA)

HSP 1 Score: 465 bits (1197), Expect = 1.900e-164
Identity = 223/271 (82.29%), Postives = 241/271 (88.93%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI 813
            MKAKAKMVQRHPFHL  PSPWPLVAA GGLSLTFGGVLFMHNY GGGELLCLGVFTILYVMFTWWRD++RE LFEGQHT +VQQGLRMGMILFIVSE+MFFFAF   FFTSSISPVFNIGGVWPP  I AISPWGLPF+NTILLLSSGASVTWAHHAIV GFKKEA+QGLG+TL FAIAFT MQG EY  + + +  G++  + +   GFHGFHVIIGT+FL+ICT+RL+  HFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI
Sbjct:    1 MKAKAKMVQRHPFHLGAPSPWPLVAALGGLSLTFGGVLFMHNYKGGGELLCLGVFTILYVMFTWWRDVVREGLFEGQHTLSVQQGLRMGMILFIVSEIMFFFAFXXXFFTSSISPVFNIGGVWPPAGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVAGFKKEALQGLGVTLAFAIAFTGMQGVEYMHSFWHVGRGIWFCILHGYRGFHGFHVIIGTLFLAICTLRLYWDHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI 271          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: A0A5K7TM11_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax=Chorda TaxID=45033 RepID=A0A5K7TM11_9PHAE)

HSP 1 Score: 460 bits (1183), Expect = 1.040e-162
Identity = 219/247 (88.66%), Postives = 231/247 (93.52%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAW 741
            MK KA MVQRHPFHLVDPSPWPLVA+ GGLSLTFGGVLFMHNY GGGELLCLGV TILYVMFTWWRD+IREALFEGQHT AVQQGLR+GMILFIVSEVMFFFAFFWAFFTSS+SPVFNIGGVWPPT I AISPWGLPF+NTILLLSSGASVTWAHHAIVGGFKKEA+QGL +TL FAI FT +QGFEY +APF MSDGVYGSVFYMATGFHGFHVIIGTIFL++CT RL+L HFSRQHHFGFEAAAW
Sbjct:    1 MKPKANMVQRHPFHLVDPSPWPLVASLGGLSLTFGGVLFMHNYKGGGELLCLGVITILYVMFTWWRDVIREALFEGQHTLAVQQGLRLGMILFIVSEVMFFFAFFWAFFTSSVSPVFNIGGVWPPTGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLVVTLAFAITFTLIQGFEYMSAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAVCTFRLYLDHFSRQHHFGFEAAAW 247          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: A0A2Z5XCG5_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=26 Tax=Chordariaceae TaxID=66220 RepID=A0A2Z5XCG5_9PHAE)

HSP 1 Score: 453 bits (1165), Expect = 4.800e-160
Identity = 219/242 (90.50%), Postives = 229/242 (94.63%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGF 726
            MK K+KM+QRHPFHLVDPSPWPLVA+ GGLSLTFGGVLFMHNY GGG+LLCLGV  ILYVMFTWWRDI+REA+FEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS+SPVFNIGGVWPPTDIIAISPWGLPF+NTILLLSSGASVTWAHHAIVGGFKKEA+Q L ITL FAIAFTAMQ FEYSAAPF MSD VYGSVFYMATGFHGFHVIIGTIFL+ICTIRLFL HFSRQHHFGF
Sbjct:    1 MKLKSKMIQRHPFHLVDPSPWPLVASLGGLSLTFGGVLFMHNYEGGGKLLCLGVLIILYVMFTWWRDIVREAVFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSVSPVFNIGGVWPPTDIIAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEAIQALLITLLFAIAFTAMQAFEYSAAPFGMSDSVYGSVFYMATGFHGFHVIIGTIFLAICTIRLFLDHFSRQHHFGF 242          
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Match: A0A2Z5XCG3_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=Chordariaceae TaxID=66220 RepID=A0A2Z5XCG3_9PHAE)

HSP 1 Score: 453 bits (1165), Expect = 4.980e-160
Identity = 217/243 (89.30%), Postives = 226/243 (93.00%), Query Frame = 1
Query:    1 MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFE 729
            MK K KM+QRHPFHLVDPSPWPLVAA GGLSLTFGGVLFMHNY GGGELLCLG+ T+LYVMFTWWRDIIREALFEGQHT AVQQGLRMGM+LFIVSEVMFFFAFFWAFF SSISPVFNIGGVWPPT I+AISPWGLPF+NTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITL FAI FTA+QGFEYS APF MSD VYGSVFY+ TGFHG HV IGTIFL+ICTIRLFL HFSRQHHFGFE
Sbjct:    1 MKLKGKMIQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHNYKGGGELLCLGLLTVLYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMVLFIVSEVMFFFAFFWAFFASSISPVFNIGGVWPPTGILAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLAFAIIFTAVQGFEYSIAPFGMSDSVYGSVFYITTGFHGLHVFIGTIFLAICTIRLFLYHFSRQHHFGFE 243          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig783.15943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZES3_ECTSI2.110e-202100.00Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyc... [more]
COX3_PYLLI6.170e-18691.11Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyc... [more]
Q2TUF2_9PHAE1.900e-18088.60Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyce... [more]
A0A2R4QQ89_9PHAE3.750e-17184.13Cytochrome c oxidase subunit 3 n=8 Tax=Fucales Tax... [more]
A0A0U1V199_SARFS7.570e-17183.82Cytochrome c oxidase subunit 3 n=199 Tax=Sargassac... [more]
A0A3Q9Y3F9_SCYLO5.010e-16592.24Cytochrome c oxidase subunit 3 (Fragment) n=88 Tax... [more]
A0A0A7LG50_SACLA1.900e-16482.29Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina ... [more]
A0A5K7TM11_9PHAE1.040e-16288.66Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax... [more]
A0A2Z5XCG5_9PHAE4.800e-16090.50Cytochrome c oxidase subunit 3 (Fragment) n=26 Tax... [more]
A0A2Z5XCG3_9PHAE4.980e-16089.30Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig783contigE-siliculosus-1a_M_contig783:5098..5916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size819
Model size819
Exons1
Hectar predicted targeting categorysignal anchor
BRITEko00000,ko00001,ko00002,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelChlorophyta
COG Functional cat.C
EggNOG OGs34MM4@3041,37QER@33090,COG1845@1,KOG4664@2759
EggNOG free text desc.Subunits I, II and III form the functional core of the enzyme complex
KEGG ModuleM00154
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG koko:K02262
Seed eggNOG ortholog70448.Q0P3F8
Seed ortholog evalue4e-97
Seed ortholog score361.3
Taxonomic scopeViridiplantae
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936129.258177-CDS-E-siliculosus-1a_M_contig783:5097..59161622936129.258177-CDS-E-siliculosus-1a_M_contig783:5097..5916Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig783 5098..5916 +
1696250941.990732-CDS-E-siliculosus-1a_M_contig783:5097..59161696250941.990732-CDS-E-siliculosus-1a_M_contig783:5097..5916Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig783 5098..5916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig783.15943.1prot_E-siliculosus-1a_M_contig783.15943.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig783 5098..5916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig783.15943.1

>prot_E-siliculosus-1a_M_contig783.15943.1 ID=prot_E-siliculosus-1a_M_contig783.15943.1|Name=mRNA_E-siliculosus-1a_M_contig783.15943.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=273bp
MKAKAKMVQRHPFHLVDPSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELL
CLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMF
FFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGAS
VTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVY
GSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWH
FVDVVWLFLFLTIYWWGFNVIA*
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mRNA from alignment at E-siliculosus-1a_M_contig783:5098..5916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig783.15943.1 ID=mRNA_E-siliculosus-1a_M_contig783.15943.1|Name=mRNA_E-siliculosus-1a_M_contig783.15943.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=819bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig783:5098..5916+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAAGCTAAAGCTAAAATGGTTCAACGGCATCCATTCCATTTAGTTGA TCCAAGTCCTTGGCCATTAGTGGCTGCATTTGGGGGGTTGAGTTTAACTT TTGGTGGAGTGCTATTTATGCATAACTATGTAGGTGGGGGGGAATTATTA TGTTTAGGGGTTTTTACTATTTTATACGTAATGTTTACTTGGTGGAGAGA TATTATACGCGAGGCATTATTTGAAGGGCAGCACACTTATGCTGTTCAGC AAGGTTTACGTATGGGTATGATTCTTTTTATTGTTTCTGAAGTAATGTTT TTTTTTGCTTTCTTTTGGGCTTTTTTTACTTCTTCTATTTCACCTGTTTT TAATATTGGTGGTGTTTGGCCTCCTACAGATATTATTGCAATTAGCCCTT GGGGTTTACCTTTTGTAAATACCATATTACTTCTTTCATCTGGTGCTAGT GTTACTTGGGCTCATCATGCGATAGTAGGAGGCTTTAAAAAAGAGGCTAT GCAAGGTTTAGGAATTACTTTAGGTTTCGCTATAGCATTCACAGCTATGC AAGGTTTTGAGTATTCTGCAGCCCCTTTTAGCATGTCAGATGGAGTATAC GGCTCAGTTTTTTATATGGCTACAGGCTTTCATGGTTTTCATGTGATTAT AGGAACAATTTTTTTAAGTATTTGTACTATTAGATTGTTTCTAGGCCATT TTAGTCGTCAGCATCATTTTGGATTTGAAGCTGCTGCTTGGTATTGGCAT TTTGTTGATGTTGTTTGGCTATTTCTTTTTCTTACAATATATTGGTGGGG TTTTAATGTTATAGCTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig783:5098..5916+

>mRNA_E-siliculosus-1a_M_contig783.15943.1 ID=mRNA_E-siliculosus-1a_M_contig783.15943.1|Name=mRNA_E-siliculosus-1a_M_contig783.15943.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1638bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig783:5098..5916+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAAGCTAAAGCTAAAATGGTTCAACGGCATCCATTCCATTTAGTTGA
TCCAAGTCCTTGGCCATTAGTGGCTGCATTTGGGGGGTTGAGTTTAACTT
TTGGTGGAGTGCTATTTATGCATAACTATGTAGGTGGGGGGGAATTATTA
TGTTTAGGGGTTTTTACTATTTTATACGTAATGTTTACTTGGTGGAGAGA
TATTATACGCGAGGCATTATTTGAAGGGCAGCACACTTATGCTGTTCAGC
AAGGTTTACGTATGGGTATGATTCTTTTTATTGTTTCTGAAGTAATGTTT
TTTTTTGCTTTCTTTTGGGCTTTTTTTACTTCTTCTATTTCACCTGTTTT
TAATATTGGTGGTGTTTGGCCTCCTACAGATATTATTGCAATTAGCCCTT
GGGGTTTACCTTTTGTAAATACCATATTACTTCTTTCATCTGGTGCTAGT
GTTACTTGGGCTCATCATGCGATAGTAGGAGGCTTTAAAAAAGAGGCTAT
GCAAGGTTTAGGAATTACTTTAGGTTTCGCTATAGCATTCACAGCTATGC
AAGGTTTTGAGTATTCTGCAGCCCCTTTTAGCATGTCAGATGGAGTATAC
GGCTCAGTTTTTTATATGGCTACAGGCTTTCATGGTTTTCATGTGATTAT
AGGAACAATTTTTTTAAGTATTTGTACTATTAGATTGTTTCTAGGCCATT
TTAGTCGTCAGCATCATTTTGGATTTGAAGCTGCTGCTTGGTATTGGCAT
TTTGTTGATGTTGTTTGGCTATTTCTTTTTCTTACAATATATTGGTGGGG
TTTTAATGTTATAGCTTAAATGAAAGCTAAAGCTAAAATGGTTCAACGGC
ATCCATTCCATTTAGTTGATCCAAGTCCTTGGCCATTAGTGGCTGCATTT
GGGGGGTTGAGTTTAACTTTTGGTGGAGTGCTATTTATGCATAACTATGT
AGGTGGGGGGGAATTATTATGTTTAGGGGTTTTTACTATTTTATACGTAA
TGTTTACTTGGTGGAGAGATATTATACGCGAGGCATTATTTGAAGGGCAG
CACACTTATGCTGTTCAGCAAGGTTTACGTATGGGTATGATTCTTTTTAT
TGTTTCTGAAGTAATGTTTTTTTTTGCTTTCTTTTGGGCTTTTTTTACTT
CTTCTATTTCACCTGTTTTTAATATTGGTGGTGTTTGGCCTCCTACAGAT
ATTATTGCAATTAGCCCTTGGGGTTTACCTTTTGTAAATACCATATTACT
TCTTTCATCTGGTGCTAGTGTTACTTGGGCTCATCATGCGATAGTAGGAG
GCTTTAAAAAAGAGGCTATGCAAGGTTTAGGAATTACTTTAGGTTTCGCT
ATAGCATTCACAGCTATGCAAGGTTTTGAGTATTCTGCAGCCCCTTTTAG
CATGTCAGATGGAGTATACGGCTCAGTTTTTTATATGGCTACAGGCTTTC
ATGGTTTTCATGTGATTATAGGAACAATTTTTTTAAGTATTTGTACTATT
AGATTGTTTCTAGGCCATTTTAGTCGTCAGCATCATTTTGGATTTGAAGC
TGCTGCTTGGTATTGGCATTTTGTTGATGTTGTTTGGCTATTTCTTTTTC
TTACAATATATTGGTGGGGTTTTAATGTTATAGCTTAA
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