mRNA_E-siliculosus-1a_M_contig778.15869.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig778.15869.1
Unique NamemRNA_E-siliculosus-1a_M_contig778.15869.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig778.15869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig778contigE-siliculosus-1a_M_contig778:5192..5869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size537
Model size656
Exons2
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-01_008540.1
Ec32 ortholog descriptionHypothetical protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig778.15869.1prot_E-siliculosus-1a_M_contig778.15869.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig778 5277..5835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936109.2517595-UTR-E-siliculosus-1a_M_contig778:5191..52761622936109.2517595-UTR-E-siliculosus-1a_M_contig778:5191..5276Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig778 5192..5276 +
1696250933.3205965-UTR-E-siliculosus-1a_M_contig778:5191..52761696250933.3205965-UTR-E-siliculosus-1a_M_contig778:5191..5276Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig778 5192..5276 +
1622936109.2973952-UTR-E-siliculosus-1a_M_contig778:5835..58691622936109.2973952-UTR-E-siliculosus-1a_M_contig778:5835..5869Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig778 5836..5869 +
1696250933.3631341-UTR-E-siliculosus-1a_M_contig778:5835..58691696250933.3631341-UTR-E-siliculosus-1a_M_contig778:5835..5869Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig778 5836..5869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936109.2662163-CDS-E-siliculosus-1a_M_contig778:5276..57821622936109.2662163-CDS-E-siliculosus-1a_M_contig778:5276..5782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig778 5277..5782 +
1696250933.3323436-CDS-E-siliculosus-1a_M_contig778:5276..57821696250933.3323436-CDS-E-siliculosus-1a_M_contig778:5276..5782Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig778 5277..5782 +
1622936109.2833695-CDS-E-siliculosus-1a_M_contig778:5804..58351622936109.2833695-CDS-E-siliculosus-1a_M_contig778:5804..5835Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig778 5805..5835 +
1696250933.3427875-CDS-E-siliculosus-1a_M_contig778:5804..58351696250933.3427875-CDS-E-siliculosus-1a_M_contig778:5804..5835Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig778 5805..5835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig778.15869.1

>prot_E-siliculosus-1a_M_contig778.15869.1 ID=prot_E-siliculosus-1a_M_contig778.15869.1|Name=mRNA_E-siliculosus-1a_M_contig778.15869.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=179bp
MVSQHHTAGIASARHSFPAGRFPGKLRECVRVCLPLLSCATFGAAFVLNV
MPSASRCGLPGGRHASKCLVPGKSSWRASSGFGLDWAISHKVRVHSEGDG
SGSISPATPTPSAIAATQAKIEAVEKDIKAVEAKIEAVESALSGGPAYLG
VTDGSFLLKQLEQLQEEKNSSGRKRTCC*
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mRNA from alignment at E-siliculosus-1a_M_contig778:5192..5869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig778.15869.1 ID=mRNA_E-siliculosus-1a_M_contig778.15869.1|Name=mRNA_E-siliculosus-1a_M_contig778.15869.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig778:5192..5869+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCCCCTTGCCCCTTGCCGCGGCCCACCCGCGGCTAGCTGACCACCTTGT
TGTGCTTGTGCGCACGTACCGCGGGCCGTGCCTCCATGGTAAGTCAACAC
CACACCGCAGGGATCGCTTCCGCTCGCCACTCATTCCCTGCAGGAAGATT
TCCAGGCAAGTTGAGGGAATGCGTTCGAGTTTGCCTGCCGCTGCTGTCCT
GTGCAACGTTCGGGGCGGCATTTGTCCTGAACGTGATGCCCTCTGCTTCT
AGATGTGGATTGCCCGGGGGGCGCCATGCAAGCAAGTGTCTTGTGCCTGG
GAAGTCGTCATGGCGTGCGTCGTCAGGTTTTGGGCTTGATTGGGCGATCT
CGCACAAGGTTAGAGTGCACAGCGAGGGGGACGGGAGTGGCAGCATTTCG
CCGGCGACGCCCACGCCATCTGCCATCGCCGCGACGCAAGCCAAGATCGA
GGCTGTGGAGAAGGACATCAAGGCGGTGGAGGCGAAGATCGAGGCTGTCG
AGTCTGCTCTCTCTGGGGGGCCTGCTTATCTCGGCGTCACTGATGGCAGC
TTCCTCTTGAAGCAGCTGGAGCAGCTCCAGGAGGAAAAGAAGCAGCTCCG
GGAGGAAAAGAAGCAGCTCCGGGAGAAAGAGAACCTGCTGTTGAAGAAGC
CCACCGCCGCCGCGGTTTCACTCTCAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig778:5192..5869+

>mRNA_E-siliculosus-1a_M_contig778.15869.1 ID=mRNA_E-siliculosus-1a_M_contig778.15869.1|Name=mRNA_E-siliculosus-1a_M_contig778.15869.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1074bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig778:5192..5869+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTAAGTCAACACCACACCGCAGGGATCGCTTCCGCTCGCCACTCATT
CCCTGCAGGAAGATTTCCAGGCAAGTTGAGGGAATGCGTTCGAGTTTGCC
TGCCGCTGCTGTCCTGTGCAACGTTCGGGGCGGCATTTGTCCTGAACGTG
ATGCCCTCTGCTTCTAGATGTGGATTGCCCGGGGGGCGCCATGCAAGCAA
GTGTCTTGTGCCTGGGAAGTCGTCATGGCGTGCGTCGTCAGGTTTTGGGC
TTGATTGGGCGATCTCGCACAAGGTTAGAGTGCACAGCGAGGGGGACGGG
AGTGGCAGCATTTCGCCGGCGACGCCCACGCCATCTGCCATCGCCGCGAC
GCAAGCCAAGATCGAGGCTGTGGAGAAGGACATCAAGGCGGTGGAGGCGA
AGATCGAGGCTGTCGAGTCTGCTCTCTCTGGGGGGCCTGCTTATCTCGGC
GTCACTGATGGCAGCTTCCTCTTGAAGCAGCTGGAGCAGCTCCAGGAGGA
AAAGAAATGGTAAGTCAACACCACACCGCAGGGATCGCTTCCGCTCGCCA
CTCATTCCCTGCAGGAAGATTTCCAGGCAAGTTGAGGGAATGCGTTCGAG
TTTGCCTGCCGCTGCTGTCCTGTGCAACGTTCGGGGCGGCATTTGTCCTG
AACGTGATGCCCTCTGCTTCTAGATGTGGATTGCCCGGGGGGCGCCATGC
AAGCAAGTGTCTTGTGCCTGGGAAGTCGTCATGGCGTGCGTCGTCAGGTT
TTGGGCTTGATTGGGCGATCTCGCACAAGGTTAGAGTGCACAGCGAGGGG
GACGGGAGTGGCAGCATTTCGCCGGCGACGCCCACGCCATCTGCCATCGC
CGCGACGCAAGCCAAGATCGAGGCTGTGGAGAAGGACATCAAGGCGGTGG
AGGCGAAGATCGAGGCTGTCGAGTCTGCTCTCTCTGGGGGGCCTGCTTAT
CTCGGCGTCACTGATGGCAGCTTCCTCTTGAAGCAGCTGGAGCAGCTCCA
GGAGGAAAAGAACAGCTCCGGGAGAAAGAGAACCTGCTGTTGACAGCTCC
GGGAGAAAGAGAACCTGCTGTTGA
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