mRNA_E-siliculosus-1a_M_contig771.15864.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig771.15864.1
Unique NamemRNA_E-siliculosus-1a_M_contig771.15864.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig771.15864.1 vs. uniprot
Match: A0A6H5KHK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.140e-5
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 2 
Query:  218 EQPRQGRHPLACPGRCHKVSRVRPGV 295
            EQP+QGR PLACPGRCH VS VRPGV
Sbjct:   23 EQPQQGRRPLACPGRCHTVSGVRPGV 48
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig771.15864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHK6_9PHAE4.140e-584.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig771contigE-siliculosus-1a_M_contig771:1795..3486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size348
Model size348
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig771.15864.1prot_E-siliculosus-1a_M_contig771.15864.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig771 1795..3486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936108.7217333-CDS-E-siliculosus-1a_M_contig771:1794..19241622936108.7217333-CDS-E-siliculosus-1a_M_contig771:1794..1924Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig771 1795..1924 -
1696250933.1430364-CDS-E-siliculosus-1a_M_contig771:1794..19241696250933.1430364-CDS-E-siliculosus-1a_M_contig771:1794..1924Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig771 1795..1924 -
1622936108.737329-CDS-E-siliculosus-1a_M_contig771:2606..27351622936108.737329-CDS-E-siliculosus-1a_M_contig771:2606..2735Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig771 2607..2735 -
1696250933.1535506-CDS-E-siliculosus-1a_M_contig771:2606..27351696250933.1535506-CDS-E-siliculosus-1a_M_contig771:2606..2735Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig771 2607..2735 -
1622936108.756234-CDS-E-siliculosus-1a_M_contig771:3397..34861622936108.756234-CDS-E-siliculosus-1a_M_contig771:3397..3486Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig771 3398..3486 -
1696250933.1640491-CDS-E-siliculosus-1a_M_contig771:3397..34861696250933.1640491-CDS-E-siliculosus-1a_M_contig771:3397..3486Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig771 3398..3486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig771.15864.1

>prot_E-siliculosus-1a_M_contig771.15864.1 ID=prot_E-siliculosus-1a_M_contig771.15864.1|Name=mRNA_E-siliculosus-1a_M_contig771.15864.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=116bp
RTPTAGASTSTTPLRCPIATATRSGCPAPRSAELRRRRRRRFPSDNASAA
AAAAAGEPSARSPAAARERPRARATTTGAPPSRLPRQMPQSLSSATRSGL
CVLTTGRSPRRNYTR*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig771:1795..3486-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig771.15864.1 ID=mRNA_E-siliculosus-1a_M_contig771.15864.1|Name=mRNA_E-siliculosus-1a_M_contig771.15864.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig771:1795..3486- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGACTCCAACAGCGGGTGCCTCAACGTCGACGACGCCTCTGAGATGCCC
GATAGCGACGGCGACGAGGAGTGGATGCCCCGCACCAAGGTCTGTGTTCC
GTCGCCGGCGTAGCAGGTTCTCTTTGTTCTCCTACGGCTGTTGTTGATGC
TGTAGACGGTGGTGTTGGTCGTTCGTCTTTACCTCCGCGTCTCGGTGCCT
GCAGAGGGCGCTCGCGCGGAGGGGGGAAGGGGGTACTCAGTGTCATACAT
GTCGCACAGACCCACGAAGCCGGGACGGAGCATGCCATTTGTTTTTCGCG
GGACTAGGCCCGCATTCTACTGGCGCGAAGAACACGCCAGGTCGCGGCGG
CTGTGCACTGGGAACGGGGCAGTCTCGCGGTCTGCGGAGTGGCCCTGCCC
TGTTGTGTTTTTGTACGATCTTTCGTCGACCTCCCAGCTCTCAGGCCATG
TTTTTAGAGAAGATGGGCGTGGGTGCTCTCGTCGAGTGTAGACTGCCCGG
TGCTCGACGACCGCCGAAACGATGCGCCGTACGTATGCGTGAGGCCGTCA
ACTAGACGTCGCGTGTCTGTGTTTTCGTTTAGCCAAAAAAAGCGTACTGT
GAAATATCGGTAGAGCACCTGATGGATCTTCTGGGGGTGACGCCGAGTTG
GACGAATCCAATAGTCGCGCACGCACGCACAATGCGACAATGCCAAGTAA
CCTTCCTCCCCCTGCCCTCGCCCCCTTCCGTTATCATCGCTCTCGCACTA
GAAGTGCGGAACTGCGGCGGCGGCGGCGGCGGCGCTTCCCAAGCGACAAC
GCGTCGGCGGCGGCAGCAGCAGCAGCGGGGGAGCCAAGCGCAAGAAGTCC
GGCGGCGGCTCGGGAGAGACCAAGAGCGAGGTGATGCTTTGTGTGTGCTT
GTCGAAGAAAAGAAAGGGTGCCCCTTCAGATGCTTTCCCCTCAAAGCAAA
CCGGGTAGAGCGGCTGTGACTGGCGGTTGAAGTGTATTTTGTTTTAACGG
CTGTCGCGTTAATCGCTCTTTTTCTTCGTCACTTGTTTTGAGTGCGTCCC
CGCTTGGAGGTAGGGAAGAGTCCCTCGCTGTCACTCTCCTGCCTCCGAAG
TTGTGTCGAAACGAAAGCAGATTCCGCCCCGCGCCCTTAGCTGCCTGCCC
CGTGCATCCGGACGCGCACTTGGCGTTGTTTCACCGCGACGGTTCCGTGG
GCGTGCGTGCGCAAATGCACCCCCTCGTTCTCGCCGAAAGTAGAGAGCAC
GGCAGTTTTATCAAACGGCTCGCGCGCTCTCATAACGCGCAAGACCTGAT
GACAGCGTCGACGATGACGGCCCCGTCGGGCGTCGGCGGTCAAGCGTCGA
AATAGGATCAAGGTCATTGGTTTTTTGTCGAGAACAGCCCGCAGCGAATG
CTGCATGCAGACCAGCCGTTGGTCAGACATACACCGTCTTGCTTCATTGG
GCCCTGGCGACGCATCCCTCTCAACACGCGCACACAGACATTCATATGTC
TTTGCTTTCCCCCCTTCCCCCGCCACATCCTCCCCGCCGGCTGCGTCACG
TTACCACCCCAGAGCAACCACGACAGGGGCGCCACCCTCTCGCCTGCCCA
GGCAGATGCCACAAAGTCTCTCGAGTGCGACCCGGAGTGGTTTGTGCGTA
TTGACGACGGGAAGGTCACCCCGGCGGAATTACACACGGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig771:1795..3486-

>mRNA_E-siliculosus-1a_M_contig771.15864.1 ID=mRNA_E-siliculosus-1a_M_contig771.15864.1|Name=mRNA_E-siliculosus-1a_M_contig771.15864.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig771:1795..3486- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGACTCCAACAGCGGGTGCCTCAACGTCGACGACGCCTCTGAGATGCCC
GATAGCGACGGCGACGAGGAGTGGATGCCCCGCACCAAGAGGACTCCAAC
AGCGGGTGCCTCAACGTCGACGACGCCTCTGAGATGCCCGATAGCGACGG
CGACGAGGAGTGGATGCCCCGCACCAAGAAGTGCGGAACTGCGGCGGCGG
CGGCGGCGGCGCTTCCCAAGCGACAACGCGTCGGCGGCGGCAGCAGCAGC
AGCGGGGGAGCCAAGCGCAAGAAGTCCGGCGGCGGCTCGGGAGAGACCAA
GAGCGAGAAGTGCGGAACTGCGGCGGCGGCGGCGGCGGCGCTTCCCAAGC
GACAACGCGTCGGCGGCGGCAGCAGCAGCAGCGGGGGAGCCAAGCGCAAG
AAGTCCGGCGGCGGCTCGGGAGAGACCAAGAGCGAGAGCAACCACGACAG
GGGCGCCACCCTCTCGCCTGCCCAGGCAGATGCCACAAAGTCTCTCGAGT
GCGACCCGGAGTGGTTTGTGCGTATTGACGACGGGAAGGTCACCCCGGCG
GAATTACACACGGTGAAGCAACCACGACAGGGGCGCCACCCTCTCGCCTG
CCCAGGCAGATGCCACAAAGTCTCTCGAGTGCGACCCGGAGTGGTTTGTG
CGTATTGACGACGGGAAGGTCACCCCGGCGGAATTACACACGGTGA
back to top