mRNA_E-siliculosus-1a_M_contig75.15616.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15616.1
Unique NamemRNA_E-siliculosus-1a_M_contig75.15616.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI)

HSP 1 Score: 787 bits (2032), Expect = 8.020e-284
Identity = 392/406 (96.55%), Postives = 399/406 (98.28%), Query Frame = 3
Query:   72 MRSPACSHERRTVATGRLAGMAVLLPFMTRGWAFQTSCINARAMGGARLLSSRQALTDRVPIPQQESHCPPEEEARRDHSGAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLTPMEELQGVEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTS 1289
            MRSP+ SHERR VATGR AGMA+LLPFMTRGWAFQTSCINARA+GGARLLSSRQALTDRVP PQQESHCPPEEEA R+HS AEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQD+ESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAA+WDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDL PMEELQG+EVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTS
Sbjct:    1 MRSPSYSHERRRVATGRFAGMAILLPFMTRGWAFQTSCINARAIGGARLLSSRQALTDRVPSPQQESHCPPEEEAGREHSEAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLIPMEELQGLEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTS 406          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 739 bits (1907), Expect = 2.870e-252
Identity = 377/430 (87.67%), Postives = 384/430 (89.30%), Query Frame = 3
Query:   72 MRSPACSHERRTVATGRLAGMAVLLPFMTRGWAFQTSCINARAMGGARLLSSRQALTDRVPIPQQESHCPPEEEARRDHSGAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLTPMEELQGVEV---------------------------------AHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIV 1262
            MRSPA SHERR VATGRLAGMAVLLPFMTRGWAFQTSCINARAMGGAR LSSRQALTDRVPIPQQESHCPPEEEA R+ S A+PR FFE+IGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDK+SDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEV  IPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFD DL P+EELQGVEV                                 AHRILSFTTEYMELVK YPAPMISIKGHLFKMLYRLLECHHDLRARLGHY CDA+EADVI+
Sbjct:    1 MRSPAYSHERRRVATGRLAGMAVLLPFMTRGWAFQTSCINARAMGGARFLSSRQALTDRVPIPQQESHCPPEEEAGRERSEADPRGFFERIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKDSDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVAGIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDRDLIPIEELQGVEVRRVSSFSCYSARRTPRMFFTCLTINAGLPGPQVAHRILSFTTEYMELVKLYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYHCDAMEADVIM 430          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA)

HSP 1 Score: 362 bits (929), Expect = 7.340e-119
Identity = 186/300 (62.00%), Postives = 224/300 (74.67%), Query Frame = 3
Query:  330 FFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLTPMEELQGVEVAHRILSFTTEYMELVKRYPAPMIS---IKGHLFKMLYRLLECHHDLRARL 1220
            F++ IG P Y+AAPMVEQSE AFR L RRHGC LAYTQMLHA++F+   A KFR     G D +EDRPLI QFCGN+P+ +V+AAR+VEH+ +A DLNLGCPQ+IAKKGNYGAYLLP   LCE ++ AM+ +L+ PVTVKIR      +T+ LA RLEGAG QL+TVHGRTV S KT  G A+W IIR+VK  + IPVVANGGIET ADAER L  TGADA+MSSE LLE+PALFD  L  + E+ G  +A R L+   EY++LV+ YP P I    ++ HLFKML+RLL CH DLR RL
Sbjct:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYP-PAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 299          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA)

HSP 1 Score: 319 bits (818), Expect = 3.320e-100
Identity = 189/410 (46.10%), Postives = 239/410 (58.29%), Query Frame = 3
Query:  294 ARRDHSGAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGV--DDE-----EDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLTPMEELQGVE-----------------------VAHRILSFTTEYMELVKRYPAPMI--SIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTSLCHRYFFDPDTRTPLDGAMD----------TSDLRVSPKQWYRRHR 1397
            AR D    +   F E++G PK++AAPMV QS+ AFR LVRRHG  LA+TQMLHA+ FA     ++R   FDG   DD+     EDRPLI QFCGN+P TVV AA +++   DA+DLNLGCPQKIAKKG YGA+LL  P L   IV  M+  L VP+TVKIR    + +T+  A  L+ AGA ++TVHGRTV   K     A+W ++R V+E + IPVVANGGIET +DA R L ETGAD VMSSE LLENP LF  +    ++L G E                       VA R LS+  EY+ L   +PA  +  + KGH FKMLYRLLE H D+R RL   +  A  +D+          +L  RY      R P++ + D          ++ L V+ K WYRRHR
Sbjct:   46 ARADAQPTDGSPFLERLGHPKFVAAPMVGQSDLAFRLLVRRHGADLAFTQMLHAKNFA--TVPRYREDNFDGFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMVTVHGRTVKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNTDHSQDLVGSEGGALNGGTSRSEMDYSEWCEAQLVAARQLSYMREYIALSTLFPARDVIGTTKGHAFKMLYRLLEVHTDVRERLVRMRNLADLSDIT--------DTLAARY------RLPVEASPDELRGFRCDDQSTPLHVAAKTWYRRHR 439          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: A0A7S3UVI5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI5_HETAK)

HSP 1 Score: 300 bits (767), Expect = 6.120e-93
Identity = 178/393 (45.29%), Postives = 229/393 (58.27%), Query Frame = 3
Query:  372 MVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEE--DRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSV---PVTVKIRA---QDKESD---TLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFD---SDLTPMEELQGVEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIV--HEASR-----------------THTSL-CHRYFFDPDTRTPLDGAMDTSDLRVS-------------PKQWYRRHRKDET 1409
            MV+QS+ AFR L R++G  LAYTQMLH+  F+  +   FR   FDG+D EE  DRPLI QF GN P+TVV+AA+++EH+ DA+DLN GCPQ+IA+KGNYGA+LL N  LC  +V+A++   +    P TVK+R     D   D   T+  A+R+   GAQLL +HGRTV   KT  G+A+W++IR VK+ VDIPV+ANGGIE   D +R L+ TGADAVMSSE LLENP LFD   S    +  L G   AHR L    EY+ELV R+P    + K H+FK LYRL E   DLRA+ G       E  V++    ASR                  H SL  H+  +      P D  + + D  +S             P  WYRRHR ++T
Sbjct:    1 MVQQSDLAFRLLCRKYGTTLAYTQMLHSSHFSTPSNSFFRETNFDGLDPEETIDRPLIAQFNGNVPETVVKAAKYIEHQVDAIDLNFGCPQQIARKGNYGAFLLENEDLCAALVSALASRPAASTCPPTVKMRCLPGPDGRPDLERTVAFAQRMAAEGAQLLCLHGRTVEQSKTNAGSADWEVIRLVKQEVDIPVIANGGIENFDDVQRCLQITGADAVMSSEALLENPMLFDPARSSAAALAALDGAGWAHRQLGLALEYLELVARHPTHYGTFKSHVFKFLYRLFEEQKDLRAKFGDKSTAMFEDMVVIILEMASRYGYHAAFDRELLENICSNHKSLNYHQKKYRRQISDPYDAVLGSLDSMISRSKENAKRMPPIAPTSWYRRHRGEDT 393          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: W7TKF8_9STRA (Dihydrouridine synthase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF8_9STRA)

HSP 1 Score: 296 bits (757), Expect = 4.460e-90
Identity = 174/374 (46.52%), Postives = 231/374 (61.76%), Query Frame = 3
Query:  342 IGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGV----DDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALF--------DSDLTPME----ELQGVEVAHRILSFTTEYMELVKRY--PAPMISIKGHLFKMLYRLLE--CHHDLRARLGHYQCDAIEADVIVHEASRTHTSLCHRYFFDPDTRTPLDGAMD-TSDLRVSPKQWYRRHRK 1400
            +G P++IAAPMV+QS+ AFR LVRR+G  LAYTQM HA  FA  N + +R   +DG+    ++  DRPLI QF G++ D +VRAA  ++H  DAVDLNLGCPQ+IAK+G+YGAYLL    L   +++ M + L+VPVT KIR    E DTL+L + +E AG  LLT+HGRT    K   G A+W  I K+K    IPVVANGG+ET  DA      TGADAVMSSEGLLENP+LF          + + M+    E++   +AHR L+F  EY+EL K++     + ++KGHLFKMLY +LE   ++DLR +LG       + + +V E   T      RY       + +D A+  T    VSP  WYRRHR+
Sbjct:  126 LGNPRWIAAPMVQQSDLAFRTLVRRYGIDLAYTQMFHATNFA--NVKVYREENWDGLGNAPENAFDRPLIAQFAGDSADELVRAASLIQHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLSHMVKHLAVPVTTKIRLLPNERDTLELVKAIEDAGVALLTIHGRTREQNKMSVGKADWAAINKIKCACHIPVVANGGVETYEDALACQSVTGADAVMSSEGLLENPSLFLPGSSLLVGGERSRMQSCEREVEAFALAHRQLNFAQEYLELAKKFWPREGVATVKGHLFKMLYHILEVPANYDLREKLGAKGNGIKQYEQVVQELLET------RY-------SSIDVAIVLTKGAIVSPVSWYRRHRE 484          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: A0A3R7YT01_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7YT01_9STRA)

HSP 1 Score: 287 bits (735), Expect = 1.230e-88
Identity = 164/360 (45.56%), Postives = 217/360 (60.28%), Query Frame = 3
Query:  330 FFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALF-DSDLTPMEELQGVEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTSLCHRYFFDPDTRTPLDGAMDTSDLRVSPKQWYRRHRKDE 1406
            F+  IG PK I APMV+QSE AFR L R  G    YT MLH+  F    + ++R + F+     +DRPLIVQFCGN+P TV+ AA+ VE  CDAVDLNLGCPQ IA+KG+YG++L+ +    + IV  +SR L++PVTVKIR  + +++TL+ A  LE AG  LLTVHGRT    KT     NWDIIR++KE + IPV+ANGG+ET  D  R LE TG D VMSSEGLLENPALF DS+  P ++   +++A + L + T Y       PA    ++ HLFKML++ L  H DLR  L   +      D++   A R   +         D +   +    T  +  S   WYRRHR+ +
Sbjct:   18 FYRAIGSPKRIVAPMVDQSELAFRMLCRTLGADCCYTPMLHSRLFT--ESVEYREKMFEHH--LQDRPLIVQFCGNDPKTVLMAAKMVESHCDAVDLNLGCPQGIARKGHYGSFLMHDKNTVKSIVETLSRGLTIPVTVKIRVFNDDNETLEFAEMLEKAGCDLLTVHGRTKEMNKTAVQEVNWDIIRRIKERLSIPVIANGGLETHEDIARCLEATGCDGVMSSEGLLENPALFADSNNKPGQDTSFLQLARQYLEYATLYP------PANDKIVRAHLFKMLFQDLRVHSDLRDALAAAKSQKEMVDIVDELAVRLKKA--------EDDKATSEIKKTTYAMETS---WYRRHRQGQ 356          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: A0A8K1CA77_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA77_PYTOL)

HSP 1 Score: 285 bits (729), Expect = 9.310e-88
Identity = 166/359 (46.24%), Postives = 211/359 (58.77%), Query Frame = 3
Query:  330 FFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLTPMEELQGVEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTSLCHRYFFDPDTRTPLDGAMDTSDLRVSPKQWYRRHRKDE 1406
            FF  IG P+ + APMV+QSE AFR L RRHG  L YT M H+  FA   + ++R + F+     +DRPLIVQFCGN+P TV+ AARHVE  CDAVDLNLGCPQ IA+KG YG++L+       DIV  +S+ LS+PVTVKIR      +TL+ A  ++ AGA LL VHGRT    KT    A+WDIIR++KE + IPV+ANGGIE   D ER L+ T AD VMSSE +LENPALF +D         VE+A + L  T EY       PA    I+ HLFK++++ L  H DLR  L      A   D +V         L  +         P +  ++TS        WYRRHR+ +
Sbjct:   29 FFRAIGSPQRVVAPMVDQSELAFRMLTRRHGAELCYTPMFHSRLFA--ESAEYRAKMFEKH--IKDRPLIVQFCGNDPQTVLAAARHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDTVRDIVTTLSQNLSIPVTVKIRIFPDRQETLEFADMIQAAGADLLCVHGRTKEMNKTAVKEADWDIIREIKERLSIPVIANGGIELPEDVERCLQVTKADGVMSSEAILENPALFSTDKEASYSF--VEMAKQYLDATLEYP------PASDKIIRAHLFKIIFQDLCVHTDLRTDLA----KAPNRDAMVKIVEELEKRLAEK---------PGEYKVETS--------WYRRHRRSQ 354          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: A0A2D4BU30_PYTIN (Dus domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU30_PYTIN)

HSP 1 Score: 283 bits (723), Expect = 1.230e-86
Identity = 162/359 (45.13%), Postives = 207/359 (57.66%), Query Frame = 3
Query:  330 FFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLTPMEELQGVEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTSLCHRYFFDPDTRTPLDGAMDTSDLRVSPKQWYRRHRKDE 1406
            FF  IG PK + APMV+QSE AFR L R HG  L YT M H+  F+   + ++R + F+      DRPL+VQFCGN+P TV+ AARHVE  CDAVDLNLGCPQ IA+KG YG++L+    +   IV+ +S  LS+PVTVKIR      +TL+    L+ AG  LL VHGRT    KT     +WDIIR++K+ + IPV+ANGGIE   D +R LE TG D VMSSE +LENPALF S     E    +E+A + L F  EY       PA    IK HLFK+L++ L  H DLR  L         A ++    +R  +          D   P+  + +TS        WYRRHRK +
Sbjct:   46 FFRAIGSPKRVVAPMVDQSELAFRMLTRHHGAELCYTPMFHSRLFS--ESAEYRAKMFEKH--MNDRPLVVQFCGNDPQTVLAAARHVEAHCDAVDLNLGCPQGIARKGRYGSFLMKEKDVVRSIVSTLSENLSIPVTVKIRVFPDRQETLEFCDMLQSAGCDLLVVHGRTKEMNKTAVREVDWDIIREIKQRLTIPVLANGGIEVPEDVDRCLEATGCDGVMSSEAILENPALFGS-----ERPSFMEMAKQYLDFAREYP------PASEKIIKAHLFKILFQDLRVHTDLRTELAKSPNRDDMARIVAELDARLSS----------DAFPPVVYSAETS--------WYRRHRKGQ 371          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Match: K3WW65_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW65_GLOUD)

HSP 1 Score: 282 bits (721), Expect = 1.790e-86
Identity = 160/361 (44.32%), Postives = 213/361 (59.00%), Query Frame = 3
Query:  330 FFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALF-DSDLTPMEELQGVEVAHRILSFTTEYMELVKRYP-APMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTHTSLCHRYFFDPDTRTPLDGAMDTSDLRVSPKQWYRRHRKDE 1406
            FF  IG PK I APMV+QSE AFR L R+HG  L YT M H+  FA   A  +R + F+     +DRPLIVQFCGN+P TV+ AA+HVE  CDAVDLNLGCPQ IA+KG YG++L+    +  +IV  +S  LS+PVTVKIR    E +TL+    L+ AG  +L VHGRT    KT     NWDIIR++KE + IPV+ANGGIE   D ER LE T AD VM+SE +LENPA+  +++ TP ++   +E+A        +YME  +++P A    ++ HLFK+L++ L  H DLR  L   +  A   D++     R             +   P      +  +  +   WYRRHRK +
Sbjct:   21 FFHAIGAPKRIVAPMVDQSELAFRMLTRKHGAELCYTPMFHSRLFAESPA--YREKMFE--QHIQDRPLIVQFCGNDPATVLAAAKHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDVVREIVQTLSDNLSIPVTVKIRMFPDEQETLEFCDMLQAAGCDMLVVHGRTKEMNKTLVREVNWDIIRQIKERLTIPVIANGGIEFPEDIERCLEATKADGVMTSEAILENPAILAETNNTPGKDTSFLELAK-------QYMEFAQQFPPANEKIVRAHLFKILFQDLRVHTDLRDLLAAVKTRAQMDDILKELEGRLRKE---------ELDAPAGEKQWSKVVYAAETSWYRRHRKGQ 361          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q4_ECTSI8.020e-28496.55Dihydrouridine synthase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD10_9PHAE2.870e-25287.67Reverse transcriptase domain-containing protein n=... [more]
A0A836CKE0_9STRA7.340e-11962.00tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tr... [more]
A0A7S2C8F7_9STRA3.320e-10046.10Hypothetical protein n=3 Tax=Dictyocha speculum Ta... [more]
A0A7S3UVI5_HETAK6.120e-9345.29Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W7TKF8_9STRA4.460e-9046.52Dihydrouridine synthase n=2 Tax=Nannochloropsis ga... [more]
A0A3R7YT01_9STRA1.230e-8845.56tRNA-dihydrouridine synthase n=1 Tax=Peronospora e... [more]
A0A8K1CA77_PYTOL9.310e-8846.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BU30_PYTIN1.230e-8645.13Dus domain-containing protein n=1 Tax=Pythium insi... [more]
K3WW65_GLOUD1.790e-8644.32tRNA-dihydrouridine synthase n=1 Tax=Globisporangi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:169532..174274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1344
Model size1688
Exons8
Ec32 orthologEc-06_000770.1
Ec32 ortholog descriptionAldolase-type TIM barrel
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko01000,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC1.3.1.88
EggNOG OGsCOG0042@1,KOG2335@2759
EggNOG free text desc.tRNA dihydrouridine synthase activity
KEGG koko:K05542
Seed eggNOG ortholog2880.D7G7Q4
Seed ortholog evalue1.9e-226
Seed ortholog score791.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15616.1prot_E-siliculosus-1a_M_contig75.15616.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig75 169805..174203 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936048.4728522-UTR-E-siliculosus-1a_M_contig75:169531..1698041622936048.4728522-UTR-E-siliculosus-1a_M_contig75:169531..169804Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 169532..169804 -
1696250907.841134-UTR-E-siliculosus-1a_M_contig75:169531..1698041696250907.841134-UTR-E-siliculosus-1a_M_contig75:169531..169804Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 169532..169804 -
1622936048.6182983-UTR-E-siliculosus-1a_M_contig75:174203..1742741622936048.6182983-UTR-E-siliculosus-1a_M_contig75:174203..174274Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 174204..174274 -
1696250907.9453921-UTR-E-siliculosus-1a_M_contig75:174203..1742741696250907.9453921-UTR-E-siliculosus-1a_M_contig75:174203..174274Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 174204..174274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936048.489678-CDS-E-siliculosus-1a_M_contig75:169804..1699301622936048.489678-CDS-E-siliculosus-1a_M_contig75:169804..169930Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 169805..169930 -
1696250907.853822-CDS-E-siliculosus-1a_M_contig75:169804..1699301696250907.853822-CDS-E-siliculosus-1a_M_contig75:169804..169930Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 169805..169930 -
1622936048.5109172-CDS-E-siliculosus-1a_M_contig75:170474..1706031622936048.5109172-CDS-E-siliculosus-1a_M_contig75:170474..170603Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 170475..170603 -
1696250907.8642817-CDS-E-siliculosus-1a_M_contig75:170474..1706031696250907.8642817-CDS-E-siliculosus-1a_M_contig75:170474..170603Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 170475..170603 -
1622936048.5295775-CDS-E-siliculosus-1a_M_contig75:170988..1710721622936048.5295775-CDS-E-siliculosus-1a_M_contig75:170988..171072Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 170989..171072 -
1696250907.875618-CDS-E-siliculosus-1a_M_contig75:170988..1710721696250907.875618-CDS-E-siliculosus-1a_M_contig75:170988..171072Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 170989..171072 -
1622936048.5441263-CDS-E-siliculosus-1a_M_contig75:171421..1716691622936048.5441263-CDS-E-siliculosus-1a_M_contig75:171421..171669Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 171422..171669 -
1696250907.8865094-CDS-E-siliculosus-1a_M_contig75:171421..1716691696250907.8865094-CDS-E-siliculosus-1a_M_contig75:171421..171669Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 171422..171669 -
1622936048.5569725-CDS-E-siliculosus-1a_M_contig75:172016..1721231622936048.5569725-CDS-E-siliculosus-1a_M_contig75:172016..172123Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 172017..172123 -
1696250907.8977857-CDS-E-siliculosus-1a_M_contig75:172016..1721231696250907.8977857-CDS-E-siliculosus-1a_M_contig75:172016..172123Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 172017..172123 -
1622936048.572792-CDS-E-siliculosus-1a_M_contig75:172479..1726281622936048.572792-CDS-E-siliculosus-1a_M_contig75:172479..172628Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 172480..172628 -
1696250907.9090054-CDS-E-siliculosus-1a_M_contig75:172479..1726281696250907.9090054-CDS-E-siliculosus-1a_M_contig75:172479..172628Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 172480..172628 -
1622936048.5847795-CDS-E-siliculosus-1a_M_contig75:173002..1730941622936048.5847795-CDS-E-siliculosus-1a_M_contig75:173002..173094Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 173003..173094 -
1696250907.9224508-CDS-E-siliculosus-1a_M_contig75:173002..1730941696250907.9224508-CDS-E-siliculosus-1a_M_contig75:173002..173094Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 173003..173094 -
1622936048.5973876-CDS-E-siliculosus-1a_M_contig75:173794..1742031622936048.5973876-CDS-E-siliculosus-1a_M_contig75:173794..174203Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 173795..174203 -
1696250907.9340951-CDS-E-siliculosus-1a_M_contig75:173794..1742031696250907.9340951-CDS-E-siliculosus-1a_M_contig75:173794..174203Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 173795..174203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig75.15616.1

>prot_E-siliculosus-1a_M_contig75.15616.1 ID=prot_E-siliculosus-1a_M_contig75.15616.1|Name=mRNA_E-siliculosus-1a_M_contig75.15616.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=448bp
MRSPACSHERRTVATGRLAGMAVLLPFMTRGWAFQTSCINARAMGGARLL
SSRQALTDRVPIPQQESHCPPEEEARRDHSGAEPRSFFEQIGRPKYIAAP
MVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDE
EDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAY
LLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKESDTLDLARRLEGAGAQL
LTVHGRTVSSQKTKQGAANWDIIRKVKEVVDIPVVANGGIETGADAERLL
EETGADAVMSSEGLLENPALFDSDLTPMEELQGVEVAHRILSFTTEYMEL
VKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEA
SRTHTSLCHRYFFDPDTRTPLDGAMDTSDLRVSPKQWYRRHRKDETF*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig75:169532..174274-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig75.15616.1 ID=mRNA_E-siliculosus-1a_M_contig75.15616.1|Name=mRNA_E-siliculosus-1a_M_contig75.15616.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4743bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:169532..174274- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACGGAGGCCAAGCTCAGCTGCAAGGGCCGCCGCACACGCTCTCTAGGTA CGCTGTTGCAGTTCCCTGGGCATGCGGAGCCCTGCTTGCAGCCACGAAAG GAGAACAGTTGCGACTGGAAGGTTGGCTGGGATGGCCGTACTGCTGCCGT TCATGACCAGAGGCTGGGCCTTTCAAACGTCATGTATCAACGCTCGCGCC ATGGGCGGCGCGAGGCTCCTTAGCTCCCGACAAGCTCTGACGGATCGAGT TCCCATCCCTCAACAAGAAAGTCATTGCCCTCCTGAAGAGGAAGCCCGAA GAGATCACAGTGGAGCGGAACCCAGGAGCTTTTTTGAGCAAATAGGTCGA CCAAAATACATCGCCGCGCCGATGGTCGAGCAGAGCGAAGCTGCGTTTCG ATACTTGGTTCGACGGCATGGCTGCGGTCTTGCATACACACAGATGCTGC ACGCCGAGAAGTTTGCACCTGATAACGCTGGTGAGTCACCCCGTACACAG TGGTTGACACATGGGCTTCTTCCAGCCACTACAAGTATTGGGCGAACATT GCACTACTGTATGCATAGCACGTACCATATATGGTACTGCTGTAACAGTG GAGGGGGGAACAACGCTGATGATTTACCCCGGTGGTGCTGTACACCGCCG GTGAATAATTGCTGGGCACATACTGGATCACCAAGTCATTCTGTACATTG ATTGGCGCCGGTGCCTCTGGACAGCGCCGGCCCCTTGCTGTAGCCCTGTG CATGCGGTCATCACACGTTGGACTTGACAGTCTCGAACAGCACAACGGTA GCGGGCGAACACAGCGCGGTACTTGGGATTGTTGCATACCTCTGTGAGGC TAGTTTGTTTTTTTACTGTGGCGGAATGGTTCCCGCGGCAAGGTGTATGC ATCCACATAGGCTGTATGTATTCTTGCAGTGATTCCGTTGCCCACTCCTT CGTAGCGCACGAGACTAGAGCAGTAGCCCTCGAATACGTTCGCACCCGCC CACCATCGTTCGTGTACGCGTACCATCACCATTCTTACCGACATCCTCCC CCTTCCTCCATGATGTCCGTATATACTGGTAGCTGATTTCTGAATTTCGA CTAAGTTTATGCTGAACGTTCGCTACACCCTACGTCCAACGTTACGCCTT GTCTCGCGTACTGCGTCGCTTGTACTGCAGAGAAGTTTCGTCGACGGCGC TTTGATGGCGTAGACGACGAAGAGGATCGTCCGCTGATAGTCCAGTTCTG TGGCAACAATCCCGACACCGTGGTGAGTGGTTAAACGCTCCTCCCCACTC AGAGTGTTTCCTCAACGTGTGTACCTGCGACCCATAGCAAACCTGCGGTC TTCGAAAATATGACGCTCGTTTTAGTTGCTATGAATAGCACGGTGAAGAC GCAGGACGAGGCCGGCGCTAGAAAGACACTACAATAGCCGTCGCAGGGTT TTTGTATGTAGGTAACATGTTGGATAAAGCATACAATCGGGGGGGTTGGG TTAGGGTTAGAGTTAGGGAATAGGGTCTGCGTACCCCCTCCCTGTTCTCT TTCCTAATAATACTGAGTTTCCCGCGAAGGCGGTCCTCTAAGCAGCATCA CAAGCAACTATGGTCTTCGCCTTCCTACATACATTCCGTTCAACAGGTAC GAGCGGCACGACACGTCGAACATCGGTGTGACGCCGTGGATTTGAACCTG GGGTGCCCACAGAAGATAGCCAAGAAAGGGAACTACGGTGCCTACCTTCT CCCGAACCCGCAACTCTGCGAGGACATTGTTGCTGCGATGAGCAGGTTGG CTCTTGTACTGATTGCTGGGCACGACCAACGTGTCAAAGTCTCCTGGATT AGTCGCATTGAAATTTTGGGTGTCAGTCGCTTTTTTTGACAGAAACAATC ATCTCCAAGAGACTATCCCCATACTTTTCTGGCATTGAGGTGTTTGCCAA CAATACCAGGTTGTTTGATTGCAGGTGGCTATCCTCGTGCTAGGTATTTT TCTGTGGGAGGCATACCCTCTCTTTCTAAGGACCCTTCCGGCTCCATAGC AGCGGTGTTTGGTGCAGCTAGATTCTAGCAGCGAGGCTCTACTCCCCCTC CTTCGATCCAATACTTCCCCGCGCACCTGCCGTTGTTCCGTGTACTTCCA GAGAGCTATCGGTCCCTGTGACAGTCAAGATCAGGGCGCAGGACAAGGAG TCAGACACGCTGGACCTCGCTCGAAGATTAGAGGGAGCTGGGGCTCAGTT ACTTACCGGTGTGGTCATGTGCCGGATCCATGTAAAACCTTCTATGCAAT CCCCGGCGGTAGCTTCCCCCCTCTTCTGTTTGCAACGCCGCTCCGAGCAC GAGGCTGAACTGTTGAACAGAACACGAACAGCTTCGAAACCTGCCGCATT ACGTTGTACGCGACAGGAAGAGGGGGTGCGGACTGGCTGCGGTGCCGTTT ACCTCAGCGATTATTGGTTACGGCAATCACGAGCGTTGTCGTGCCTGGTC GCCAACCTTTTCTCAGGGCGCAAAGAAACCCGTTCTCCCCAAGCTAACGA CTGCCTCTCATGTCTGCACTTGCCACCCCCCCCCCCCTCCTTCGTTCGCT TGAAGTACACGGCCGCACGGTTTCGTCGCAAAAAACGAAGCAAGGGGCCG CTAACTGGGACATCATCAGGAAGGTGAAGGAAGTCGTGGACATCCCTGTG GTGGCCAACGGGGGCATCGAGACAGGGGCTGACGCGGAGCGATTGCTGGA GGAGACCGGCGCAGACGCCGTCATGTCGTCCGAAGGCTTGTTGGAAAACC CCGCGCTCTTCGACAGCGATCTCACCCCTATGGAAGAGCTGCAGGGTGTC GAGGTATGGAGGGTCTCTCTCGTTCAGTTGCTAGTCTGTGAGGGAATGCT AGAATCGATGTCGGTGTGTCTTGATGTGGTCAGCTTCTTTATTTCCTAGA AGAATGTGTGTGCCCAAAAGGCACAACCCTTGGGTGTAATACTCGGCTCT AGTGCTGCTGTTCTGGCGAGGTACGGGGCGGTTGCTTTCTCTTTGTCCAC AGCGTGGGCAGTGGATCGTTGCGACTGCAGCCTAGCTCTTTCAAAAGACT TTGTGAATGGCTGAGTGCCAAGCGGTCCTACCGCGTGCAAGAAGATCACC GCGCAAGTTCTTCACATCTTTAACCATAAACGCCGGCTTGCCGGGGCCTC AGGTCGCTCATCGCATATTGTCGTTCACGACGGAATACATGGAGCTCGTG AAGCGGTATCCAGCGCCAATGATCTCCATCAAGGGGGTGAGAGCCATTGA TTCGTCCGTTCTATTCGACCCACTAGACGAGAACGGCAATCCTGTAAAGT AGGGTCGGTGTAACCGCCACGGCGTAGCCGTCGATACCCCCGCGGTCCGT TCCTAGGAGACAAGAGTAAGCACCGATAATCGAATGATGTGCACATCGGA GAAGAGGTCCCTTGGCAAGCAAGTCTACCGGTTGATTCCGTTCATGATAC GCGTTCTAGTCCAACGTTTAGTAGCGTTCTATACGATGACAAGTCATGTC GGAGTACTCGCACGCACCCCGCGGCGAACCTTTCAGAGGTCCTACACAGA GTAGTGGCTGGATGGCCCTGAGTTCGCTTTGCTGAGTCTTGCACCTTGTG CCACCGCCTTACTGCTGTCAGCACCTGTTCAAGATGCTCTACCGGCTGCT GGAGTGCCACCACGACCTACGTGCCCGCCTGGGGCACTACCAATGCGACG CCATCGAGGCGGATGTCATCGTACACGAGGCAAGCCGAACACACACATCC GTCTATCCCCATCTTCTTGTCGGTGGCACTTCGAATCTTCACGTCGTCGG TGCATGGACCCTGTTTACACTCAAACTTGATTGTAGCGAGTGCTGCTGTT CACCCTCCACTTGCTGCTGTGCTAGCGACCGGTACAGTGGTTCATTTGGG TGCGGTAAGATGTCGGGATGTATGTTGAGTAGCACCGCAAGGACGTAGTA GTTGCGTTCTCGGTGTAAAGGCGGATATCGATCGACTTGTAGCCCGATTT TTCACAGTGCGTGCAGTTCTGTGGCAGTGTGCATTTTTTTTGGGAAAATT TGAGGTGCCTCGGGGCACAACACGATTCTCTTTCTTCTTTGCTCAGTTTC AGACAAGAGACTATACCAACATCATCTCCGCAGACAACGTGCTATTGAGC CCGATCTCTGTATGTGGGCAGCAATTTTCGTGCGTGGTTTTGTTCCCGCC TGGGGTCTACAAAGGTGTGCGCTGACACGATTGGTTGCCTTCAACTGAAG CCCAGCCCAACCCCCCCCCTGATCCTGCCCAAACGTTGCCACAGCTGTGC CATCGATATTTCTTCGATCCTGATACGCGAACGCCGTTGGATGGGGCTAT GGACACGTCGGATTTGCGCGTTTCACCCAAGCAATGGTATAGACGGCACA GGAAGGACGAGACATTTTAGAACACAGGGCCAACTTGTGTGCGTAGTTTG TTTTACACGCGTGAATGAGTGTCATAGAGGGCTAGGTTCGTCGTTTCTCA GAGTGTGTGTCTGCCTCTTTGTTGGCGTCCTTTGATCTAGTACATTGTAG TCACACTTGTGTTAGAGGCCTCCAACTAGGTTTTGCGCCCACTCAAACAC GTACCGAGGGCAGGTAGGAGAGGTTAAACAAAACAGGCCTTGCTTTGGTT CGGGCGAAGTGTGGATTCTTTTGTTCAAGGTTACACGCCAGGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:169532..174274-

>mRNA_E-siliculosus-1a_M_contig75.15616.1 ID=mRNA_E-siliculosus-1a_M_contig75.15616.1|Name=mRNA_E-siliculosus-1a_M_contig75.15616.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2688bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:169532..174274- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGGAGCCCTGCTTGCAGCCACGAAAGGAGAACAGTTGCGACTGGAAG
GTTGGCTGGGATGGCCGTACTGCTGCCGTTCATGACCAGAGGCTGGGCCT
TTCAAACGTCATGTATCAACGCTCGCGCCATGGGCGGCGCGAGGCTCCTT
AGCTCCCGACAAGCTCTGACGGATCGAGTTCCCATCCCTCAACAAGAAAG
TCATTGCCCTCCTGAAGAGGAAGCCCGAAGAGATCACAGTGGAGCGGAAC
CCAGGAGCTTTTTTGAGCAAATAGGTCGACCAAAATACATCGCCGCGCCG
ATGGTCGAGCAGAGCGAAGCTGCGTTTCGATACTTGGTTCGACGGCATGG
CTGCGGTCTTGCATACACACAGATGCTGCACGCCGAGAAGTTTGCACCTG
ATAACGCTGATGCGGAGCCCTGCTTGCAGCCACGAAAGGAGAACAGTTGC
GACTGGAAGGTTGGCTGGGATGGCCGTACTGCTGCCGTTCATGACCAGAG
GCTGGGCCTTTCAAACGTCATGTATCAACGCTCGCGCCATGGGCGGCGCG
AGGCTCCTTAGCTCCCGACAAGCTCTGACGGATCGAGTTCCCATCCCTCA
ACAAGAAAGTCATTGCCCTCCTGAAGAGGAAGCCCGAAGAGATCACAGTG
GAGCGGAACCCAGGAGCTTTTTTGAGCAAATAGGTCGACCAAAATACATC
GCCGCGCCGATGGTCGAGCAGAGCGAAGCTGCGTTTCGATACTTGGTTCG
ACGGCATGGCTGCGGTCTTGCATACACACAGATGCTGCACGCCGAGAAGT
TTGCACCTGATAACGCTGAGAAGTTTCGTCGACGGCGCTTTGATGGCGTA
GACGACGAAGAGGATCGTCCGCTGATAGTCCAGTTCTGTGGCAACAATCC
CGACACCGTGAGAAGTTTCGTCGACGGCGCTTTGATGGCGTAGACGACGA
AGAGGATCGTCCGCTGATAGTCCAGTTCTGTGGCAACAATCCCGACACCG
TGGTACGAGCGGCACGACACGTCGAACATCGGTGTGACGCCGTGGATTTG
AACCTGGGGTGCCCACAGAAGATAGCCAAGAAAGGGAACTACGGTGCCTA
CCTTCTCCCGAACCCGCAACTCTGCGAGGACATTGTTGCTGCGATGAGCA
GGTACGAGCGGCACGACACGTCGAACATCGGTGTGACGCCGTGGATTTGA
ACCTGGGGTGCCCACAGAAGATAGCCAAGAAAGGGAACTACGGTGCCTAC
CTTCTCCCGAACCCGCAACTCTGCGAGGACATTGTTGCTGCGATGAGCAG
AGAGCTATCGGTCCCTGTGACAGTCAAGATCAGGGCGCAGGACAAGGAGT
CAGACACGCTGGACCTCGCTCGAAGATTAGAGGGAGCTGGGGCTCAGTTA
CTTACCGAGAGCTATCGGTCCCTGTGACAGTCAAGATCAGGGCGCAGGAC
AAGGAGTCAGACACGCTGGACCTCGCTCGAAGATTAGAGGGAGCTGGGGC
TCAGTTACTTACCGTACACGGCCGCACGGTTTCGTCGCAAAAAACGAAGC
AAGGGGCCGCTAACTGGGACATCATCAGGAAGGTGAAGGAAGTCGTGGAC
ATCCCTGTGGTGGCCAACGGGGGCATCGAGACAGGGGCTGACGCGGAGCG
ATTGCTGGAGGAGACCGGCGCAGACGCCGTCATGTCGTCCGAAGGCTTGT
TGGAAAACCCCGCGCTCTTCGACAGCGATCTCACCCCTATGGAAGAGCTG
CAGGGTGTCGAGTACACGGCCGCACGGTTTCGTCGCAAAAAACGAAGCAA
GGGGCCGCTAACTGGGACATCATCAGGAAGGTGAAGGAAGTCGTGGACAT
CCCTGTGGTGGCCAACGGGGGCATCGAGACAGGGGCTGACGCGGAGCGAT
TGCTGGAGGAGACCGGCGCAGACGCCGTCATGTCGTCCGAAGGCTTGTTG
GAAAACCCCGCGCTCTTCGACAGCGATCTCACCCCTATGGAAGAGCTGCA
GGGTGTCGAGGTCGCTCATCGCATATTGTCGTTCACGACGGAATACATGG
AGCTCGTGAAGCGGTATCCAGCGCCAATGATCTCCATCAAGGGGGTCGCT
CATCGCATATTGTCGTTCACGACGGAATACATGGAGCTCGTGAAGCGGTA
TCCAGCGCCAATGATCTCCATCAAGGGGCACCTGTTCAAGATGCTCTACC
GGCTGCTGGAGTGCCACCACGACCTACGTGCCCGCCTGGGGCACTACCAA
TGCGACGCCATCGAGGCGGATGTCATCGTACACGAGGCAAGCCGAACACA
CACATCCCACCTGTTCAAGATGCTCTACCGGCTGCTGGAGTGCCACCACG
ACCTACGTGCCCGCCTGGGGCACTACCAATGCGACGCCATCGAGGCGGAT
GTCATCGTACACGAGGCAAGCCGAACACACACATCCCTGTGCCATCGATA
TTTCTTCGATCCTGATACGCGAACGCCGTTGGATGGGGCTATGGACACGT
CGGATTTGCGCGTTTCACCCAAGCAATGGTATAGACGGCACAGGAAGGAC
GAGACATTTTAGCTGTGCCATCGATATTTCTTCGATCCTGATACGCGAAC
GCCGTTGGATGGGGCTATGGACACGTCGGATTTGCGCGTTTCACCCAAGC
AATGGTATAGACGGCACAGGAAGGACGAGACATTTTAG
back to top