mRNA_E-siliculosus-1a_M_contig75.15603.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: D7G7R5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R5_ECTSI) HSP 1 Score: 679 bits (1751), Expect = 1.740e-238 Identity = 333/337 (98.81%), Postives = 336/337 (99.70%), Query Frame = 3
Query: 270 SWEWSQDAEQLPVQASDSLCLTMDSSVVDGLEQTELLVLGGCDAEFQEVAGDCSSLSSSTRTYDPFLDEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVKVSSDDTMTFSTTEAMTIKRGDHSCIRLPATTEVFCIGGFTEENWEYTILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGENDELQPMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQAVDETDSEVYSIEDTVNWYQEVLVDTLSTSA 1280
SWEWSQDAEQLPVQASDSLCLTMDSSVVDGL+QTELLVLGGCDAEFQEVAGDCSS+SSSTRTYDPFLDEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKV+VSSDDTMTFSTTEAMTIKRGDHSCIRLPATTEVFCIGGFTEENWEYTILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGENDE QPMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQAVDETDSEVYSIEDTVNWYQEVLVDTLSTSA
Sbjct: 2 SWEWSQDAEQLPVQASDSLCLTMDSSVVDGLDQTELLVLGGCDAEFQEVAGDCSSISSSTRTYDPFLDEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVEVSSDDTMTFSTTEAMTIKRGDHSCIRLPATTEVFCIGGFTEENWEYTILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGENDERQPMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQAVDETDSEVYSIEDTVNWYQEVLVDTLSTSA 338
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: A0A6H5K6P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P9_9PHAE) HSP 1 Score: 225 bits (573), Expect = 8.410e-66 Identity = 116/134 (86.57%), Postives = 123/134 (91.79%), Query Frame = 3
Query: 105 MVSKRASSALAVCCICPALLAAAQDACTVGTVQDNCVSATSEDDIDEFFFCTDRYSWEWSQDAEQLPVQASDSLCLTMDSSVVDGLEQTELLVLGGCDAEFQEVAGDCSSLSSSTRTYDPFL--DEFIENQEMP 500
M+S+RASS LAVCCI ALLAAAQDACTVGTVQDNCVSATS D+IDEFFFCTDRYSWEWSQDAEQLPVQASDSLCLT+DSSVVDGL+QTELLVLGGCDAEFQEVAGDCSSLSSSTRTYDPFL +E E + P
Sbjct: 1 MLSERASSVLAVCCISLALLAAAQDACTVGTVQDNCVSATSGDNIDEFFFCTDRYSWEWSQDAEQLPVQASDSLCLTLDSSVVDGLDQTELLVLGGCDAEFQEVAGDCSSLSSSTRTYDPFLVSEELKEERACP 134
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: A0A836C8V3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8V3_9STRA) HSP 1 Score: 203 bits (517), Expect = 4.040e-55 Identity = 120/341 (35.19%), Postives = 185/341 (54.25%), Query Frame = 3
Query: 273 WEWSQDAEQLPVQASDSLCLTMDSSVVDGLEQTELLVLGGCDAEFQEVAGDCSSLSSSTRTYDPFLDEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQ---TTVVKVKVSSDDTMTFSTTEAMTI--KRGDHSCIRLPATTEVFCIGGFTEENWEYTILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGENDELQPMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQAVDETDSEVYSIEDTVNWYQEVLVDTLSTSA 1280
WEWS+DA L + SD+ +T+ ++V D T +++LGGC Q V+ C +++ Y P D + + M T R+R +A + ++++FGGR + C VD Y+V T EWT L +C SD + + D I L GGYD +Y TT+V V + T T + T+ M I RGDH C +T +C+GGF ++ +S+ E++D+ W + A M R DF ++N R+TVVGGE+++ + DVEWYD + DCWT S LF+LP+ R R+ A ++++FGGQ ++ + +E V WYQE DT + +A
Sbjct: 1 WEWSEDANNLATKRSDTTVVTVPANVSD---TTTMVLLGGCTENIQAVS--CQNVTDRVDIYYPETDTYQASTPMLTPRYRFSAAALGANIFIFGGRTNNDTMVCEVDMYNVDTEEWTAL--VDWVNCTSDSAAFVAGDNVIALVGGYDANYTETSGLTTLVTVGTGTGGTPTLTFTDGMPIIEARGDHECWS-DRSTVAYCMGGFNLDDQTGAKVST-EKYDIAKGTWAAAADMTSGRGDFVLDMLNDRLTVVGGEDNQTG-ITDVEWYDLANDCWTSSSSLFELPFPRFRFGGAVDPLQSKMYVFGGQG-PRVNNAYWPLESDVFWYQETPADTATGAA 330
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: F2UQX3_SALR5 (Mucin n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UQX3_SALR5) HSP 1 Score: 94.7 bits (234), Expect = 2.120e-16 Identity = 86/302 (28.48%), Postives = 142/302 (47.02%), Query Frame = 3
Query: 333 TMDSSVVDGLEQTELLVLGGC------DAEFQEVAGDCSSLSSSTRTYDPFL--DEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVKVSSDDTMTFSTTEA--MTIKRGDHSCIRLPATTEVFCIGGFTEENWEYTILSSVERF-DMETEQWESKASMVIPRADFGAGLVNGRITVVGGE----NDELQ--PMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQ 1187
T +SS LE + GGC +A + C+S+ + + + + I+ P+ R+R A+V V +++L GGR+ + +D TG WT + A SDH+ +D TIY+ GGYD Y AQ+ + ++ + + TF+ +T+ RGD S + +T V+ +GGFT N L VE + + W + + R D A + + V+GGE N+ P+DDV+ ++P T WT G + + R R+ AA+V +++FGGQ
Sbjct: 74 TANSSSSSTLEAPIAFISGGCIQQEWINASYPGYY--CTSVLTEVYAFLAAVGNERIIKTWSAPSNRYRHASVIVGSNLFLIGGRNFDDGIVTTMDILDFHTGIWTSVPSDLA---LSDHAAFVLND-TIYVVGGYDATYTAQSKMYQLVNYTVNGTTFAEVAGGDLTVARGDLSVTTVNST--VYAVGGFTHANSFTDPLPVVESWLPASGKGWRREPDLPSGRGDKVALNSHNHLVVIGGETRHPNNSAHSVPVDDVDVFNPLTSQWTHLGHV---SFPRFRFAAASV--GHYVYLFGGQ 362
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: A0A0D2U8N0_CAPO3 (Folate_rec domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U8N0_CAPO3) HSP 1 Score: 89.7 bits (221), Expect = 1.450e-14 Identity = 95/324 (29.32%), Postives = 137/324 (42.28%), Query Frame = 3
Query: 279 WSQDAEQLPVQASDSLCLTMDSSVVDGLEQTELLVLGGCDAEFQEV---AGDCSSLSSSTRTYDPFLDEFI-ENQEMPTERFRAAAVNVSEHVYLFGGRDAA---GNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVKVSSDDTMTFSTTEAMT--IKRGDHSCIRLPATTEVFCIGGFTEE---NWEYT-ILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGEN-DELQPM-------DDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRI-FIFGG 1184
WS A+ LP SD T+ V V GGC + C+ ++ YDP + ++ M T R R AA E +Y+FGGR A G + + Y W + + SD + V D IY+FGGYD Y V DT + + RGDHS + ++C GGF++ +W T L+++E FD W +ASM + R D G +V+ + V+GGE D P +++E YDP+ D W L +P RLR AA+V G ++FGG
Sbjct: 791 WSM-AQPLPTARSDFTASTVGKRV---------FVTGGCITDNVVTPYGVDQCNQVAGDVNIYDPETNAWVVPGGVMITPRTRHAAAVWRERLYVFGGRPAGDDYGQAFSSAEFYDFELDGWRAI--APLPVALSDAAAVELLD-KIYVFGGYDSFYTGSLNRTFVYDPMADTWSELVNAPLNGAFGRGDHSAAVIDGV--IYCFGGFSQALGADWGTTEALATMEAFDPFVGHWTPRASMNLARGDAGIAVVDDMLYVMGGEGKDGSDPYTWKYIARNELERYDPARDLWI---TLAPVPSSRLRCAAASV---GEFTYLFGG 1093
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: A0A836BP90_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BP90_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 4.500e-12 Identity = 79/275 (28.73%), Postives = 123/275 (44.73%), Query Frame = 3
Query: 429 SSLSSSTRTYDPFLDEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCN-VDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVKVSSDDTMTFSTTEAMTIKR----GDHS-CIRLPATTEVFCIGG--FTEE--------NWE--YTILSSVERFDMETEQWESKASMVIPRADFGA-GLVNGRITVVGGEN----DELQPMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGG 1184
++L +S YD + M R+R A + +Y+ GG L + V+ Y + + W + + T D G A + G +Y+ GGYD ++ + ++ + ++ T T A+ GD + C + ++ +GG F ++ +W Y LSSVERFD T++W +A+M+ PR DFG L +GRI V GGE M DVE Y + D W L P R R A V +GR++ FGG
Sbjct: 71 ATLLASVNRYDTETGLMVAMAPMSQGRYRFAYALLDGKIYIMGGTLEVDGLPIDTVEVYDIASNTWGKT--GKLTMPRIDACGAAIN-GKVYIIGGYDGNFRSLASLEVIDPAT-STATAEPQPALLPASANLIGDRADCRAVTVDGYIYALGGTKFVDKGEAICNSADWIQCYEFLSSVERFDPNTQRWSPRAAMINPRGDFGVEALPSGRIIVAGGERGNGTQNQMAMYDVEEYIAADDIWIPKAPL---PQARFRDDLAYV--NGRVYAFGG 336
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: A0A7R9YVV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YVV8_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.450e-8 Identity = 39/136 (28.68%), Postives = 66/136 (48.53%), Query Frame = 3
Query: 375 LLVLGGCDAEFQEVAGD-----CSSLSSSTRTYDPFLDEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVKVSS 767
+ +LGGC + C LS T +DP E + MP +R+R +AV V +++ GGR+ ++ +D Y W + SDH+ + + G +Y+ GGYD++Y+A ++VV + V S
Sbjct: 98 IYLLGGCVGNYLPKNDSLSEYFCPILSDGTTAFDPSSGLLEERRRMPRKRYRHSAVAVEGKIWVVGGRNEVDSVVAEIDVYDPAWDNWITVGSFPQELAVSDHA-LWTYQGNLYMAGGYDENYLAMSSVVVIDVDS 232
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: UPI001668C7C7 (kelch repeat-containing protein n=1 Tax=Deinococcus aerolatus TaxID=522487 RepID=UPI001668C7C7) HSP 1 Score: 64.7 bits (156), Expect = 2.160e-7 Identity = 67/253 (26.48%), Postives = 106/253 (41.90%), Query Frame = 3
Query: 498 PTERFRAAAVNVSEHVYLFGGRDAAGN----LTCNVDRYSVLTGEWTQL-DVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTT--VVKVKVSSDDTMTFSTTEAMTIKRGDHSCIRLPATTEVF------CIGGFTEENWEYTILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGEN--DELQP-MDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQAVDETDS 1208
PT + V +Y+FGG D N T Y WT+L D+ H+GVA+DD +IYL GG+ ++ T V + V + T+S A+ + RG + +RL F G + ++ ++ +L+ T W + A M PR ++NGRI +GG++ DE +V+ YD +TD W + LP ++ RI + GG E +S
Sbjct: 33 PTTLYEGQGAVVGGKLYVFGGFDKNVNDKPMATRAASMYDPAADRWTRLRDIPDPVT----HAGVAADDRSIYLAGGFLGNHPGPQTDHVWRYDVVDE---TWSALPALPVARGGGALVRLGRDLHFFGGVTRDARGEYLSDHQDHWVLTLDGAGQSGTGTWRTAAPMPNPRNHLAGAVMNGRIYAIGGQHLGDEANGNQSEVDVYDAATDTWR---AVRALPIPLGHITSSVFGWRERIIVAGGVTQGERES 275
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: UPI000BA81606 (beta-scruin-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA81606) HSP 1 Score: 58.9 bits (141), Expect = 2.040e-5 Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 3
Query: 801 MTIKRGDHSCIRLPATTEVFCIGGFTE---ENWEYTILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGENDELQPMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQAVDETDSEVYSIEDTVNWYQEV 1253
MT R H+ + + ++ GG+ N E ++V + + +++W KA M RA A +V GRI +VGG+ND + + VE Y+P D WT + +P + L C AT +G +++ GG +T+ + D V Y V
Sbjct: 51 MTEPRNYHAIVYIHG--RIYVFGGYNPLEIVNGEMQPTATVFQLTIRSKRWRRKADMFHARACHAAVVVEGRIFIVGGKNDSGEILSSVEVYEPDFDQWT---MVKPMP-EPLMGCGATY-LEGLVYVAGGVTNSKTNKNSSIVVDHVLCYDPV 197
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Match: UPI001BB2C127 (kelch-like protein 24 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2C127) HSP 1 Score: 58.5 bits (140), Expect = 4.220e-5 Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 3
Query: 474 EFIENQEMPTERFR---AAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDV------SQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVKVSSDDTMTFSTTEAMTIKRGDHSCIRLPATTEVFCIGGFTE---ENWEY---TILSSVERFDMETEQWESKASMVIPRADFGAGLVNGRITVVGGENDELQPMDDVEWYDPSTDCWTDSGELFDLPYK-RLRYCAATVE 1154
++++ +P ER R A + ++Y GG D + VDR+ W +L+ S +T F + +Y+FGG +A T + S D + + R +C +P G T E++ Y ++ + V R++ + W +M A GA + +G+I V+GGEN P+ +VE YDP+T+ W S L PY RL CA ++
Sbjct: 368 QWVDLPSLPPERVRHRVACTSSEDGNLYFVGGFDGVQRVRL-VDRFDTKNNMWHELEPIPIAVSSPSTVIFGNK---------LYVFGGA----LANGTATDLVYSYD-------LDDASSHRSWEACNPMP-----HAFSGITAVVLESYVYIVGSVSTVVHRYNPVEDSWSQAENMAETHALCGATVCDGKIYVMGGENQPNSPISEVEGYDPTTNRWRPSQNL---PYPIRLHGCATVIK 581 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig75.15603.1 >prot_E-siliculosus-1a_M_contig75.15603.1 ID=prot_E-siliculosus-1a_M_contig75.15603.1|Name=mRNA_E-siliculosus-1a_M_contig75.15603.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=431bp MVSKRASSALAVCCICPALLAAAQDACTVGTVQDNCVSATSEDDIDEFFFback to top mRNA from alignment at E-siliculosus-1a_M_contig75:77782..87668+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig75.15603.1 ID=mRNA_E-siliculosus-1a_M_contig75.15603.1|Name=mRNA_E-siliculosus-1a_M_contig75.15603.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9887bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:77782..87668+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:77782..87668+ >mRNA_E-siliculosus-1a_M_contig75.15603.1 ID=mRNA_E-siliculosus-1a_M_contig75.15603.1|Name=mRNA_E-siliculosus-1a_M_contig75.15603.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2586bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:77782..87668+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |