mRNA_E-siliculosus-1a_M_contig74.15577.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig74.15577.1
Unique NamemRNA_E-siliculosus-1a_M_contig74.15577.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig74.15577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig74contigE-siliculosus-1a_M_contig74:804097..804955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size498
Model size507
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig74.15577.1prot_E-siliculosus-1a_M_contig74.15577.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig74 804105..804955 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936042.6761482-UTR-E-siliculosus-1a_M_contig74:804096..8041041622936042.6761482-UTR-E-siliculosus-1a_M_contig74:804096..804104Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 804097..804104 -
1696250905.1658611-UTR-E-siliculosus-1a_M_contig74:804096..8041041696250905.1658611-UTR-E-siliculosus-1a_M_contig74:804096..804104Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 804097..804104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936042.6912396-CDS-E-siliculosus-1a_M_contig74:804104..8043191622936042.6912396-CDS-E-siliculosus-1a_M_contig74:804104..804319Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 804105..804319 -
1696250905.1759987-CDS-E-siliculosus-1a_M_contig74:804104..8043191696250905.1759987-CDS-E-siliculosus-1a_M_contig74:804104..804319Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 804105..804319 -
1622936042.7122715-CDS-E-siliculosus-1a_M_contig74:804672..8049551622936042.7122715-CDS-E-siliculosus-1a_M_contig74:804672..804955Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 804673..804955 -
1696250905.1860027-CDS-E-siliculosus-1a_M_contig74:804672..8049551696250905.1860027-CDS-E-siliculosus-1a_M_contig74:804672..804955Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 804673..804955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig74.15577.1

>prot_E-siliculosus-1a_M_contig74.15577.1 ID=prot_E-siliculosus-1a_M_contig74.15577.1|Name=mRNA_E-siliculosus-1a_M_contig74.15577.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=166bp
TVVVRPGFVPSPVHSHSNLPQKHTLNCCFFSLPSRPFKTRRLSSFFTTHD
RPLRQVGYFLPALSCVACASSCTPIATLASDVIFLHLHQRLKNTGLVAVT
KANDVLSDIKAEGGIFRRDAIGDLVEEKSWIVSCVDDARRVAKTLKKRAR
KRVLKAHVSLQGCVR*
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mRNA from alignment at E-siliculosus-1a_M_contig74:804097..804955-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig74.15577.1 ID=mRNA_E-siliculosus-1a_M_contig74.15577.1|Name=mRNA_E-siliculosus-1a_M_contig74.15577.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=859bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:804097..804955- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACAGTTGTTGTCCGTCCTGGCTTCGTCCCGTCCCCCGTTCACTCTCACAG
CAACCTTCCCCAAAAGCACACACTGAACTGCTGCTTTTTCTCTCTCCCTT
CAAGACCCTTCAAGACCCGACGATTGTCTTCGTTCTTCACGACACACGAT
CGTCCTCTTCGACAAGTCGGCTACTTCCTTCCGGCGCTGTCCTGCGTCGC
CTGCGCTTCATCGTGTACCCCCATCGCGACGCTTGCGTCGGATGTCATCT
TTCTGCATCTCCATCAACGTCTTAAGAACACAGGTGGGTCGTCCTTTCGG
TTGCATGCGCTTACACTTTTGTTTACTCGGGCATAAACCAATCCGTTCCC
GCACAACGGCATCCACGCTACTTCGTCGAGTACGCGACAACCACCCAGGT
CAGCTAGCTGTTGTCGCCCTCAGATTTCATGAGCATATACGTGTGTGTGG
GTATCGCGACTCGAGGTGCGGGTGTGGTCGGGTCTGTGCTTACCTGCCTC
CCCACCGTAACTTCCCGCCACACCCGCCCAACTGCCCCGCTTCCACGTCA
TACGCTCATCCATTCTCCTATGCAATTGTATGTATTCATATTTTTTCTGT
CCCTCTCTGCCCCAATGTCTATCATTATGACGTCAGGATTGGTCGCTGTC
ACCAAAGCAAACGACGTCCTTTCCGACATCAAGGCAGAGGGTGGCATCTT
CCGGAGGGACGCCATCGGGGATCTCGTCGAAGAGAAATCCTGGATAGTCT
CGTGCGTGGACGACGCCCGACGGGTCGCGAAGACCCTCAAGAAACGGGCC
CGGAAGCGCGTCCTCAAAGCTCACGTAAGTTTGCAAGGGTGTGTTCGGTA
AGGTACGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig74:804097..804955-

>mRNA_E-siliculosus-1a_M_contig74.15577.1 ID=mRNA_E-siliculosus-1a_M_contig74.15577.1|Name=mRNA_E-siliculosus-1a_M_contig74.15577.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=996bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:804097..804955- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACAGTTGTTGTCCGTCCTGGCTTCGTCCCGTCCCCCGTTCACTCTCACAG
CAACCTTCCCCAAAAGCACACACTGAACTGCTGCTTTTTCTCTCTCCCTT
CAAGACCCTTCAAGACCCGACGATTGTCTTCGTTCTTCACGACACACGAT
CGTCCTCTTCGACAAGTCGGCTACTTCCTTCCGGCGCTGTCCTGCGTCGC
CTGCGCTTCATCGTGTACCCCCATCGCGACGCTTGCGTCGGATGTCATCT
TTCTGCATCTCCATCAACGTCTTAAGAACACAGACAGTTGTTGTCCGTCC
TGGCTTCGTCCCGTCCCCCGTTCACTCTCACAGCAACCTTCCCCAAAAGC
ACACACTGAACTGCTGCTTTTTCTCTCTCCCTTCAAGACCCTTCAAGACC
CGACGATTGTCTTCGTTCTTCACGACACACGATCGTCCTCTTCGACAAGT
CGGCTACTTCCTTCCGGCGCTGTCCTGCGTCGCCTGCGCTTCATCGTGTA
CCCCCATCGCGACGCTTGCGTCGGATGTCATCTTTCTGCATCTCCATCAA
CGTCTTAAGAACACAGGATTGGTCGCTGTCACCAAAGCAAACGACGTCCT
TTCCGACATCAAGGCAGAGGGTGGCATCTTCCGGAGGGACGCCATCGGGG
ATCTCGTCGAAGAGAAATCCTGGATAGTCTCGTGCGTGGACGACGCCCGA
CGGGTCGCGAAGACCCTCAAGAAACGGGCCCGGAAGCGCGTCCTCAAAGC
TCACGTAAGTTTGCAAGGGTGTGTTCGGTAAGATTGGTCGCTGTCACCAA
AGCAAACGACGTCCTTTCCGACATCAAGGCAGAGGGTGGCATCTTCCGGA
GGGACGCCATCGGGGATCTCGTCGAAGAGAAATCCTGGATAGTCTCGTGC
GTGGACGACGCCCGACGGGTCGCGAAGACCCTCAAGAAACGGGCCCGGAA
GCGCGTCCTCAAAGCTCACGTAAGTTTGCAAGGGTGTGTTCGGTAA
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