mRNA_E-siliculosus-1a_M_contig74.15575.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig74.15575.1
Unique NamemRNA_E-siliculosus-1a_M_contig74.15575.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig74.15575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig74contigE-siliculosus-1a_M_contig74:768279..769697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size138
Model size308
Exons3
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig74.15575.1prot_E-siliculosus-1a_M_contig74.15575.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig74 769197..769599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936042.5622005-UTR-E-siliculosus-1a_M_contig74:768278..7683191622936042.5622005-UTR-E-siliculosus-1a_M_contig74:768278..768319Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 768279..768319 -
1696250905.1095583-UTR-E-siliculosus-1a_M_contig74:768278..7683191696250905.1095583-UTR-E-siliculosus-1a_M_contig74:768278..768319Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 768279..768319 -
1622936042.5788598-UTR-E-siliculosus-1a_M_contig74:769165..7691961622936042.5788598-UTR-E-siliculosus-1a_M_contig74:769165..769196Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 769166..769196 -
1696250905.1198454-UTR-E-siliculosus-1a_M_contig74:769165..7691961696250905.1198454-UTR-E-siliculosus-1a_M_contig74:769165..769196Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 769166..769196 -
1622936042.625988-UTR-E-siliculosus-1a_M_contig74:769599..7696971622936042.625988-UTR-E-siliculosus-1a_M_contig74:769599..769697Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 769600..769697 -
1696250905.1552675-UTR-E-siliculosus-1a_M_contig74:769599..7696971696250905.1552675-UTR-E-siliculosus-1a_M_contig74:769599..769697Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 769600..769697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936042.5916994-CDS-E-siliculosus-1a_M_contig74:769196..7692781622936042.5916994-CDS-E-siliculosus-1a_M_contig74:769196..769278Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 769197..769278 -
1696250905.129864-CDS-E-siliculosus-1a_M_contig74:769196..7692781696250905.129864-CDS-E-siliculosus-1a_M_contig74:769196..769278Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 769197..769278 -
1622936042.6095207-CDS-E-siliculosus-1a_M_contig74:769543..7695991622936042.6095207-CDS-E-siliculosus-1a_M_contig74:769543..769599Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 769544..769599 -
1696250905.1448872-CDS-E-siliculosus-1a_M_contig74:769543..7695991696250905.1448872-CDS-E-siliculosus-1a_M_contig74:769543..769599Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 769544..769599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig74.15575.1

>prot_E-siliculosus-1a_M_contig74.15575.1 ID=prot_E-siliculosus-1a_M_contig74.15575.1|Name=mRNA_E-siliculosus-1a_M_contig74.15575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=46bp
MRRNLLLKQKRPSSTARLREGTWTARSRQHPPSERKPRCGKSQRR*
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mRNA from alignment at E-siliculosus-1a_M_contig74:768279..769697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig74.15575.1 ID=mRNA_E-siliculosus-1a_M_contig74.15575.1|Name=mRNA_E-siliculosus-1a_M_contig74.15575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1419bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:768279..769697- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GATGGCGGTTGATGTGCTACACGTGGAGAGCATCAGAGCAAGCGACGGCC
CTCTGCGCATGACAAGTTCCACAGAAGGAACGGCAGAGATCGTCACAAAT
GAGGCGCAACCTGCTACTCAAGCAGAAGCGGCCATCGAGCACGGCGAGAC
TAAGGTGAACCAACAATTTCATCACTTGTTGCCCGTATCGGGAGCGCTGG
TACGTCCAAGTGTGAGCCATGACACATAGACGTCCTTCCCGGAAACCTTT
GTTTGGGCAGACGCTCGCCGCCGTTCACCTACACGGACACGCTAGACGAT
TCTTTATGCACCCTTGCGTGATACCATGGTACACACGAGGTGCCCCGTAC
ATCTCTTTTCTCCTTCGTGTGTGACTCTGGACGGTTGCTAAACATGTTTT
CAACGCCGACCGTGCTCAGGGAAGGCACGTGGACCGCCCGATCAAGGCAG
CACCCGCCAAGCGAGCGAAAACCCCGGTGTGGAAAATCGCAGCGGCGTTG
ATGACACGTTCCTTAAAAAGCGGCTACGCCAAGTAAGTCACAGGTAGAGC
CGCCCGCATAGTCGTTACTCTCACCTTGTGGACTTGCGCACGATATCCGT
TCTTCCCAAACCATCGAATCACGCTGCGACAGGTACACGTAACGTTTCCG
ATTCCGCCGAAACGAAATTAGGCCCCGACAAGGAGTGCTACCCCATTGTG
CGCAGGCAGTTCGGTCGAGTTGTCTTAAACTAAGCTGCAAGTTGAACATC
GTTCCAAACGGCTTACCAAATTGTACTACTTCGCCCACCTGCAGTACGCG
ATGGCAGGTTCCTCCCGCCCAGAGGCTAATGTAAAATTTGGCAACGAAAG
ATAGATAGGTGCTCGGGCGTAGAAGTTATTCATCTACTACCAAGAGAAAA
TACACTCCTCAACGCAGTGCGACCCCAACGCAGTAGTCCCTAACGCGTGT
TGACGTATCCGGATGTTGTCATTAGGGGCTTTGACTGTAAAGCAGAGCAT
TTTAGTTGAATTTGGGGGAACCGGATAGCCGCTATGTTTCAAAACTTTTT
TTCGAAGGCTTCCGCTCATATCTACTGTTCATATTTTCCCCACGGCACAA
CTCTGATCCGTAGGCACACCGAAGAATTTCTCTCCCTTCTGTCGCATCTC
CTACGACGATCGCTCGTGGACTGTTTTCTTGAAGGGGTGGGCAACATCTC
GTGCTGCCGGCCAAAAAGACAGCCAACAAGGCAGGAACGACTTGACCCGC
TGGGACCCACCGTTGTGGTAATTGACTCTTGAGAATCGTTGGCCTTGGCA
TTCTCACCAAGTTGCGATGATTTTCAATTCCTCTGCTTGAACGTTTCAAA
CTCGTTTCCTCGGGCACCCGTCCTCCAGCGAGCTCACGTGGTCGACTATG
GTGTTGGGTGGTTCTGTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig74:768279..769697-

>mRNA_E-siliculosus-1a_M_contig74.15575.1 ID=mRNA_E-siliculosus-1a_M_contig74.15575.1|Name=mRNA_E-siliculosus-1a_M_contig74.15575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:768279..769697- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGCGCAACCTGCTACTCAAGCAGAAGCGGCCATCGAGCACGGCGAG
ACTAAGATGAGGCGCAACCTGCTACTCAAGCAGAAGCGGCCATCGAGCAC
GGCGAGACTAAGGGAAGGCACGTGGACCGCCCGATCAAGGCAGCACCCGC
CAAGCGAGCGAAAACCCCGGTGTGGAAAATCGCAGCGGCGTTGAGGAAGG
CACGTGGACCGCCCGATCAAGGCAGCACCCGCCAAGCGAGCGAAAACCCC
GGTGTGGAAAATCGCAGCGGCGTTGA
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