mRNA_E-siliculosus-1a_M_contig74.15573.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig74.15573.1
Unique NamemRNA_E-siliculosus-1a_M_contig74.15573.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig74.15573.1 vs. uniprot
Match: A0A6H5JNE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE1_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 9.710e-64
Identity = 129/158 (81.65%), Postives = 139/158 (87.97%), Query Frame = 2 
Query:  230 LRMEDPPPSSMLVHAPTPWVGQKEIRNGEYGGVPPAKSNTDDDNMFGGNDRVAEGPSLPRSFPAAPAWGGDGARLRHAALARATPGGSGAAPATPDGSAARAPRREGGGRALRENSGMMNGLAGEXXXXXXXXXVGSAQSSTGGGDARLRGLTSKASR 703
            ++MEDPPPSS LVHA TPWVGQ+ IRN +YGGVPPAKSN DDD+MFGGNDRVA+GPSL R+F  APAWGG+GAR+ HAALARAT GGSGAAPATPDGSAAR+PRREGGGR L EN     GLAGEXXXXXXXX VG AQSSTGGGDARLRGLTSKASR
Sbjct:    1 MQMEDPPPSSTLVHASTPWVGQEGIRNAKYGGVPPAKSNPDDDSMFGGNDRVAKGPSLRRAFQVAPAWGGNGARVGHAALARATAGGSGAAPATPDGSAARSPRREGGGRTLGEN-----GLAGEXXXXXXXXGVGRAQSSTGGGDARLRGLTSKASR 153
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BLAST of mRNA_E-siliculosus-1a_M_contig74.15573.1 vs. uniprot
Match: D7G379_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G379_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 3.280e-57
Identity = 112/155 (72.26%), Postives = 119/155 (76.77%), Query Frame = 2 
Query:  230 LRMEDPPPSSMLVHAPTPWVGQKEIRNGEYGGVPPAKSNTDDDNMFGGNDRVAEGPSLPRSFPAAPAWGGDGARLRHAALARATPGGSGAAPATPDGSAARAPRREGGGRALRENSGMMNGLAGEXXXXXXXXXVGSAQSSTGGGDARLRGLTSK 694
            +RMEDPPPSS LVHA T WV Q+ IRN EYGG+PPAKSNTDDDNMFGGNDR+ + PSL RSFPAAPAWGGDGA L H A ARATPGGSGA          RAPR+EGGGR L ENSGMM+GLA E         VG AQSSTGGGDARLRGLTSK
Sbjct:    1 MRMEDPPPSSTLVHASTHWVDQEGIRNAEYGGIPPAKSNTDDDNMFGGNDRLTKDPSLRRSFPAAPAWGGDGASLGHVASARATPGGSGAXXXXXXXXXXRAPRKEGGGRTLGENSGMMSGLAVEAGDGGEGGGVGRAQSSTGGGDARLRGLTSK 155
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig74.15573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNE1_9PHAE9.710e-6481.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G379_ECTSI3.280e-5772.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig74contigE-siliculosus-1a_M_contig74:748171..750164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size468
Model size705
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig74.15573.1prot_E-siliculosus-1a_M_contig74.15573.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig74 748171..748638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936041.7391593-CDS-E-siliculosus-1a_M_contig74:748170..7486381622936041.7391593-CDS-E-siliculosus-1a_M_contig74:748170..748638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 748171..748638 -
1696250904.6492565-CDS-E-siliculosus-1a_M_contig74:748170..7486381696250904.6492565-CDS-E-siliculosus-1a_M_contig74:748170..748638Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig74 748171..748638 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936041.7560146-UTR-E-siliculosus-1a_M_contig74:748638..7487681622936041.7560146-UTR-E-siliculosus-1a_M_contig74:748638..748768Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 748639..748768 -
1696250904.6579807-UTR-E-siliculosus-1a_M_contig74:748638..7487681696250904.6579807-UTR-E-siliculosus-1a_M_contig74:748638..748768Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 748639..748768 -
1622936041.7681532-UTR-E-siliculosus-1a_M_contig74:750059..7501641622936041.7681532-UTR-E-siliculosus-1a_M_contig74:750059..750164Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 750060..750164 -
1696250904.6662972-UTR-E-siliculosus-1a_M_contig74:750059..7501641696250904.6662972-UTR-E-siliculosus-1a_M_contig74:750059..750164Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig74 750060..750164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig74.15573.1

>prot_E-siliculosus-1a_M_contig74.15573.1 ID=prot_E-siliculosus-1a_M_contig74.15573.1|Name=mRNA_E-siliculosus-1a_M_contig74.15573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=156bp
MEDPPPSSMLVHAPTPWVGQKEIRNGEYGGVPPAKSNTDDDNMFGGNDRV
AEGPSLPRSFPAAPAWGGDGARLRHAALARATPGGSGAAPATPDGSAARA
PRREGGGRALRENSGMMNGLAGEAGDGGEGGGVGSAQSSTGGGDARLRGL
TSKASR
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mRNA from alignment at E-siliculosus-1a_M_contig74:748171..750164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig74.15573.1 ID=mRNA_E-siliculosus-1a_M_contig74.15573.1|Name=mRNA_E-siliculosus-1a_M_contig74.15573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1994bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:748171..750164- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGTAGTGTCAAGGGGTTAGGCCGGCGGTAGTCGTCCAGCCTCAGGACACT
CTTGGGCAGGAGCGTGGGATCGAGATGCTTGCGTTGTCATACCAGGAGGT
CTCTGGTGAGAGCTTATTGCGTGTGTGGAGCTTTAAACAGCAGGCAGCAG
GTCGCAGCGCCCACGTACTCAGGTATTAACTTGCACCTTACAGCAGTGAC
TATTGCTGGTTCCCTCTGCCGGAGTCAGCCCGTGGAAGGTACAGGACACT
GCTGTAGAACGGGAGGGACGTGTAGCTTCGATATCACACTCCGGAACCTA
CTGCCTCCCCTGTTTTCTTGTGCCTAGCCTTGCCTCCGTGTTCGGCGTTG
AGACGGACATGTGTGTGCGGTAACGGCCGTTGAGTGCAGTGAGCGAGGTG
TTGATCCCGTACGGAACCAGTAATAGCAGATGTGTGACTTGTGACGACCA
GCGCACCCTTGGTACTGAACCAAAGTCACCCTCCTAGTATGGTTTGTGGT
TTCCATTTAGCCGTTGTTGCCTGTACTGCGCCACTCAAATGTAGTCGAAC
GGTACTCCTGTAGGTCGAGACTATTGTACATGCGGTACATTTACATTTAG
CAGCGGTGGGATGCACCCCTGCATGTACGTTACAGTATTGCAGCTGTGAC
TTGTGACGACCAGCGCACCTCATCAGCGGTATGTGCTTACCCTTTAGCCG
TTGTTGCCTGTACTGCGCCACTCCATGGTAGTCGCTCAGTAGGTCGAGAG
TACATGCAGGTACATACAGCAGAAGTGGATGCACGTATGTACTGCTGTAC
CACGCGCAAATCGCGTAGTTTCATGCACGCGGCGCACGGCAACAGCAGTA
CCGACTTAATGCTCCCGCTGCGGAACCGACTTTTTTTGTGTGTGCTGTGT
GCTGCAAGCAATCAGGGTGCTACAGAGTTCAGGTACTGCATAGGAGAACG
CCTGGCTTCTCTATTATCAATGGGTAGACTATTATAGGCATGCCAGCATG
ACGATTTAGCGCAGCAGGTTTCTCGGCGTGGCCATTCTTGAGTCACGCAT
GCGTGGCTGTTGTCTTGTTTTTCTACGCTTCAAAACCGTTTCGATCTCTG
CCCACTAGCATCTAACGTCCAGCCACACCAAAAGGTTACAGCAGTACTAA
CATGCAGAGAGTTTTTCATTCTCATACCAACTCTGGGCTTCCCTCGTAGA
TTATTGCCCAACCGTCCGTGGCTTCATCATCACCAATAGTCTCTCATTCG
AGACGCATAGCACGTGCTCGGCGCATTGGTAAGACCGGTTTGGAAACCCG
ATATTCTAGAAAACTTCAAACAATTTAGACTTTGCATTTCCGATTTTAGA
ACATGCTGCGCCGTCCCTCCCTCCCCCATGGCATCATGTATCACAGGAGG
AGCTGAGCTGGAGTGATTGCACGAGAGGATCGGGCGGGAGTTTCCCGGTA
GAGCGAGACATCGTTACCTGAAGAATTCCAGCGTAAACGCAAAGCTTTCC
GGATTAGGTCAGGCCCGATACTGCGAATGGAGGACCCGCCGCCATCGTCG
ATGCTTGTCCACGCGCCTACTCCTTGGGTAGGTCAAAAGGAGATTCGCAA
CGGGGAATACGGTGGGGTCCCCCCCGCCAAAAGCAACACGGACGACGACA
ACATGTTCGGCGGCAACGACCGAGTCGCCGAAGGGCCGAGCCTGCCGCGA
TCGTTCCCGGCTGCGCCGGCTTGGGGTGGAGACGGTGCAAGGCTCAGACA
CGCAGCGTTAGCGAGAGCAACACCGGGGGGTTCTGGAGCAGCGCCCGCCA
CGCCCGACGGATCAGCGGCACGGGCACCGAGGAGAGAAGGTGGAGGGAGA
GCTCTGCGTGAAAACTCTGGGATGATGAACGGTCTAGCGGGGGAAGCAGG
CGATGGCGGAGAGGGGGGTGGGGTTGGCAGTGCCCAAAGCAGCACAGGTG
GAGGGGACGCGCGGCTCCGGGGTCTCACCAGCAAGGCAAGCCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig74:748171..750164-

>mRNA_E-siliculosus-1a_M_contig74.15573.1 ID=mRNA_E-siliculosus-1a_M_contig74.15573.1|Name=mRNA_E-siliculosus-1a_M_contig74.15573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:748171..750164- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGGACCCGCCGCCATCGTCGATGCTTGTCCACGCGCCTACTCCTTG
GGTAGGTCAAAAGGAGATTCGCAACGGGGAATACGGTGGGGTCCCCCCCG
CCAAAAGCAACACGGACGACGACAACATGTTCGGCGGCAACGACCGAGTC
GCCGAAGGGCCGAGCCTGCCGCGATCGTTCCCGGCTGCGCCGGCTTGGGG
TGGAGACGGTGCAAGGCTCAGACACGCAGCGTTAGCGAGAGCAACACCGG
GGGGTTCTGGAGCAGCGCCCGCCACGCCCGACGGATCAGCGGCACGGGCA
CCGAGGAGAGAAGGTGGAGGGAGAGCTCTGCGTGAAAACTCTGGGATGAT
GAACGGTCTAGCGGGGGAAGCAGGCGATGGCGGAGAGGGGGGTGGGGTTG
GCAGTGCCCAAAGCAGCACAGGTGGAGGGGACGCGCGGCTCCGGGGTCTC
ACCAGCAAGGCAAGCCGGATGGAGGACCCGCCGCCATCGTCGATGCTTGT
CCACGCGCCTACTCCTTGGGTAGGTCAAAAGGAGATTCGCAACGGGGAAT
ACGGTGGGGTCCCCCCCGCCAAAAGCAACACGGACGACGACAACATGTTC
GGCGGCAACGACCGAGTCGCCGAAGGGCCGAGCCTGCCGCGATCGTTCCC
GGCTGCGCCGGCTTGGGGTGGAGACGGTGCAAGGCTCAGACACGCAGCGT
TAGCGAGAGCAACACCGGGGGGTTCTGGAGCAGCGCCCGCCACGCCCGAC
GGATCAGCGGCACGGGCACCGAGGAGAGAAGGTGGAGGGAGAGCTCTGCG
TGAAAACTCTGGGATGATGAACGGTCTAGCGGGGGAAGCAGGCGATGGCG
GAGAGGGGGGTGGGGTTGGCAGTGCCCAAAGCAGCACAGGTGGAGGGGAC
GCGCGGCTCCGGGGTCTCACCAGCAAGGCAAGCCGG
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