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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig74.15533.1 vs. uniprot
Match: D7FLR1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLR1_ECTSI) HSP 1 Score: 236 bits (601), Expect = 6.040e-70 Identity = 224/274 (81.75%), Postives = 225/274 (82.12%), Query Frame = 2
Query: 368 MISGDSTASHMGSVKNIEKARERRTFEVMPGSSAADLPDELQEQTQQTIHPRMGYDMSDSLFMQHQEAAGREKESRRALEERAALEAFRAAALKKPFDPAAVATGAKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEASGVSSPQTGGGQTVAEGESPGAGGKRTVDTHGGGEEGERGAEKKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGLGLVAYSSGDDXDEES 1189
MISGDSTASHMGSVKNIEKARERRTFEVMPGSSAADLPDELQEQTQ TIHPRMGYDMSDSLFMQHQEAAGREKESRRALEERAALEAFRAAALKKPFDPAA ATGAKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A ASGVSSPQT GGQTVAEGESPGAGGKR+VDT GG XXXXXXXXXXXXXXXXX XX XXXXX GLGLGLVAYSSGDD DEES
Sbjct: 1 MISGDSTASHMGSVKNIEKARERRTFEVMPGSSAADLPDELQEQTQ-TIHPRMGYDMSDSLFMQHQEAAGREKESRRALEERAALEAFRAAALKKPFDPAAAATGAKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AVTASGVSSPQTVGGQTVAEGESPGAGGKRSVDTQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSKTGKHSTSAHEGGXXVGGESGKXXXXXEASSGLGLGLVAYSSGDDDDEES 271
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 825 |
| Model size | 1757 |
| Exons | 5 |
| Ec32 ortholog | Ec-03_005350.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936026.4298236-UTR-E-siliculosus-1a_M_contig74:158448..159013 | 1622936026.4298236-UTR-E-siliculosus-1a_M_contig74:158448..159013 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig74 158449..159013 - |
| 1696250897.1603394-UTR-E-siliculosus-1a_M_contig74:158448..159013 | 1696250897.1603394-UTR-E-siliculosus-1a_M_contig74:158448..159013 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig74 158449..159013 - |
| 1622936026.5012646-UTR-E-siliculosus-1a_M_contig74:161449..161738 | 1622936026.5012646-UTR-E-siliculosus-1a_M_contig74:161449..161738 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig74 161450..161738 - |
| 1696250897.2142766-UTR-E-siliculosus-1a_M_contig74:161449..161738 | 1696250897.2142766-UTR-E-siliculosus-1a_M_contig74:161449..161738 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig74 161450..161738 - |
| 1622936026.5157635-UTR-E-siliculosus-1a_M_contig74:163478..163556 | 1622936026.5157635-UTR-E-siliculosus-1a_M_contig74:163478..163556 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig74 163479..163556 - |
| 1696250897.2258108-UTR-E-siliculosus-1a_M_contig74:163478..163556 | 1696250897.2258108-UTR-E-siliculosus-1a_M_contig74:163478..163556 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig74 163479..163556 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936026.4457815-CDS-E-siliculosus-1a_M_contig74:159013..159556 | 1622936026.4457815-CDS-E-siliculosus-1a_M_contig74:159013..159556 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 159014..159556 - |
| 1696250897.1708982-CDS-E-siliculosus-1a_M_contig74:159013..159556 | 1696250897.1708982-CDS-E-siliculosus-1a_M_contig74:159013..159556 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 159014..159556 - |
| 1622936026.4611933-CDS-E-siliculosus-1a_M_contig74:160205..160349 | 1622936026.4611933-CDS-E-siliculosus-1a_M_contig74:160205..160349 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 160206..160349 - |
| 1696250897.1817865-CDS-E-siliculosus-1a_M_contig74:160205..160349 | 1696250897.1817865-CDS-E-siliculosus-1a_M_contig74:160205..160349 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 160206..160349 - |
| 1622936026.4730628-CDS-E-siliculosus-1a_M_contig74:160897..160990 | 1622936026.4730628-CDS-E-siliculosus-1a_M_contig74:160897..160990 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 160898..160990 - |
| 1696250897.1923664-CDS-E-siliculosus-1a_M_contig74:160897..160990 | 1696250897.1923664-CDS-E-siliculosus-1a_M_contig74:160897..160990 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 160898..160990 - |
| 1622936026.4878924-CDS-E-siliculosus-1a_M_contig74:161404..161449 | 1622936026.4878924-CDS-E-siliculosus-1a_M_contig74:161404..161449 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 161405..161449 - |
| 1696250897.203103-CDS-E-siliculosus-1a_M_contig74:161404..161449 | 1696250897.203103-CDS-E-siliculosus-1a_M_contig74:161404..161449 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig74 161405..161449 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig74.15533.1 >prot_E-siliculosus-1a_M_contig74.15533.1 ID=prot_E-siliculosus-1a_M_contig74.15533.1|Name=mRNA_E-siliculosus-1a_M_contig74.15533.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=275bp
MISGDSTASHMGSVKNIEKARERRTFEVMPGSSAADLPDELQEQTQQTIH PRMGYDMSDSLFMQHQEAAGREKESRRALEERAALEAFRAAALKKPFDPA AVATGAKGDGGSGSGAGGAGADSRRKEPPPPLAGIKLRKKTSRSGTSSSP SPSPAAEASGVSSPQTGGGQTVAEGESPGAGGKRTVDTHGGGEEGERGAE KKRERENGGAKKSKKKKSSKKTKSKTRKHSKSAHEGGGGVGGESGKGGAA AEASSGLGLGLVAYSSGDDDDEES* back to topmRNA from alignment at E-siliculosus-1a_M_contig74:158449..163556- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig74.15533.1 ID=mRNA_E-siliculosus-1a_M_contig74.15533.1|Name=mRNA_E-siliculosus-1a_M_contig74.15533.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5108bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:158449..163556- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) AGAGGCTGCATCACAAACAGGGCCCGTTTTGGATCACTTGCCTGGTACCT
CGGAGACGTCGAATACCTTGCTTCGGAGGTGCGTTGATATCCAGTTTGGC
AGAAGTACGATGCCGACACGTCCGTATGTAAGGGTGTTGGTGTCAGCGAA
AGTGACCTCTGGAGCATGCATAGCATATACAGCAGCAGTAGTGCTCCCTC
TTGAATTGCTGAGTTGGGCTCGTCTCTCCCCATGTGAAGGCGTTTTCAGT
AACTGCGTAGTGCAGGATACGCATCTACAGAAATGTGTTTGCCCTTCTTT
GGGAGCGTATCTCGTAGGAAAGTGTCGCACAACCACGATCCGAAGCTAGA
AGAAGATTCCGGCACTTGTTCGTAGACACCTTTTTTCTCTCTCTACCGTA
CATATCTACACAAGACAACACCCCCCCCCCAATGATATCATGATATCATG
GGGATTCTAATGTAAGCAAATCATGACCTGTGTGCATGCGTGTTGTTTGT
GTATGGGTTGTGGTACCTTTTGTCGCCCTTTTTCTCTTTATCAGAGAGTG
GGTTTGTGTTTTGGGCTCATGCTGAGCCGTAACAATATTTACCCGACGGG
TTGTAATCGTGTGAGGGGTGTCATCTTGTGTTGGACACCCGGCGGCGTTG
CGCCTACAACCGCCGTATTGGGATTCTACTATTATATTGAGTTCAGTATG
GGAAGGGCCCGATAAACCCAAAACGACCTCCCGACTTAGGAATGCTGCCG
TTCAATGCCTACCAGGAGACGGCATGGTAAACCAAGATTGCTGGTTGTTC
GCCTCCAATTTTCATGATGGCCAACAAGAGGGAATGCATATAACAGCCCC
GCTCTCAAATCCTTGGCAGTTTTTCAAGGCACCTATAGTCATTCCACCCG
TTTACTTTACGTCAGGGGAGACTACTTGTGGTGGAACAGCAAAGGCACTT
ACCTGCTGTCTACTTGCAGCGGGTGCGCCTTCTCTTCACCCGCCGCCACA
GCACGTAGAGATAGATCCGCCAGGCATACAGTATAGGGATGAGCTTACGT
GACATGAGAATAGAGAAACTCCGTTACAGTAGTATCAGCTTTTATGTTTA
GGCGTTCGTGCGTACTTGTGCGTTGGTTCAGTGTCCTAGGCAGCGTGTTC
TGTTTTAGTTTGTATTTACGTTAGCGGTTTCTACCGCGTCTCTCTCGTCG
GGTGACGTCCTCCTGGGCAATTTCGACGGGTGCTCTTGATCGTGTTCTCC
GGATAGGGTGTCGCACATTTGCACAGTATCAGCGATAAAGAAAAGCCGTG
TTCGGCAACACGTTAGTCCCCGCATCGCTTTGTGTCCACCATCGCTTGCC
GCTCCTGATGGGCCAAGTCAACGAAAGTAGAACCATGCTCGCACAGGATG
ACGACGGTTTGAACACCCGACACTTATGTAGAGTTCGGGCCGAAGTTAAG
AAATCCTTGGAGATGTATTTTTATAGGCTCGGATTTTCACGAAAATTTGA
ACAATGGGTTACGTAACGCAGCTCAGCCATGGACTCACATTGTTGTAAAC
TCGATACAACAGTCTGAAGTCGACGGTGGTAACGAACTAACCGTGAAATT
GAGCCTCGACCCGACGTTTCTTGCCCACTGTACTTCGGGGACGAAACTGC
CCAATTGGTCGGAAAGAAAGGCGAGGTCGACGACGGCCATGCGATCGCAC
GCCCCTGATCCCCACCCCACTTTGTGAGATTTTTCCTAGCGAAGCCATAG
TTGAGGATGGAGTTTGTATGCCTGACTTCAGTGTGTCGTGGCCAACATCG
GGTGCAAATCATTTCCAGCGCAGGGCAACCGGGCCCGGGCAAGCGCACGG
TCCGAACGCGTTATCGCCGCGCACGTTACTCGCACTAACGGCGCTCGGCT
GCCGACGGAGTAGTGGGGGCATCCACAGAGAGGACGGTCACACGGCGCCT
AGCACAATCACGAAGGAAGGCGGCGTTAGAGCAAGGCGCTAGCAACGACT
AGCGCAAGCTAGGACGCAGTAGAAAAAGCGGTGCGTGCGGCTTGAGGCGG
CACCTCACACCTCAACCCCATCTTCAGCCGTGCGAAGGTTGATCCAGGCG
TGTCATCATGATCAGCGGAGATTCCACCGCGTCCCACATGGGGAGCGTCA
AGGTGGGTCGAGACGCAATGTGTAGGCAATGCTTCGCCTGTTGTCTCAGT
AGTTTATTCCAGGGACCTAGATTGGCGCGAACACCGTTTTGACTGCATTG
AGTAGTTACGAATCCAAACACATTTGAGCAGGATTGCCCCAATGGTCTCG
CCTATGATTGGGAACAGTTGTCTTCTGGTATCTATCCCAGGCAATCAGCT
TGCGTACTTTACTCGAATCGTCTCGCGCACTCATGGGTGTAGGAATAAGT
CGCCATGCTCCGTGTGCAATTGTTTTCACCAATGATTTGATTGCCATCTT
CCGATGACACAAAGGAAATGACATCACTCGTTTGTATGAAATTTTCCGAG
GGGTTTCGATAGCGATACTGCAACAAGGTAATACCACCATCACACCACCG
GCCACGCCTTGTTCAGAATATTGAGAAAGCGAGGGAGAGAAGGACTTTCG
AAGTTATGCCGGGATCTTCCGCCGCGGATCTTCCGGATGAGCTCCAAGAA
CAAACGCAGGTGACGGTTGGGTGCACATTGTGTGGTAATATATCATTGTA
CTGAAGAAATTGTGATCATTGTATGAGATTCGAGACTTGACAGAGTCTTG
ATATTGGAATCAGCGTTGGAATGACGAGGCGTTGTTGATGTTGCTGCAGG
GCAGTCCGTGGGTGCATGTAAAAAAATACGATTAATGACATCGAGCACCT
GGTCTGGCCAATACGCAAGTGCACGTTAACCGATCATTACCGGCCATGAC
TTGATGTCTAGACATGCATTACACCGCACCTTAACACCGATTGTTAAACT
ATATTTTTGTTGGAAGCGCTAGGCCACAGGTTCACATGAAGCGGGCCGCT
GCTCCTGTCGTTTTCTCCCTGTTCTAAGCAAATCGCTATGGCACTGCTCA
CGGGTTGTTTGCGGCAAACTCCTCGACGGAGGTATCGTCTTTGAGAGCGC
AGCTTGTTGAAACGACAACCAAGTTTTGATCCCCCATGTTTCTAAACGCT
CGGGGTGTTTTTCACCTTTTGTACCCGAACTGCTCTGTTCTACCCAACGG
TTTCGAGCAGACCATCCACCCTCGGATGGGGTACGATATGTCTGATAGCC
TCTTCATGCAGCACCAGGAGGCCGCCGGCAGAGAGAAGGAGTCCAGAAGG
GCGTTGGAGGAGAGAGCTGCTCTGGAGGCGTTTCGCGCTGCAGCACTGAA
GGTTTCTACCTCGAATCACGTTGTATTCTATGAACCCTATTTATTGTTCG
TCCACTTACATGATCGTTTCTTGAATAGCATTGTGCACTACTGCTGTAGA
AGCGATGAGTGATTCACCGGTCTACGCGCACAGCAAAAATGCCGTTTTAC
TGCGCAAGACGGTCGAATACATTTATTTCGCAGTGTCGGGAATTCAGGTT
GGTTTGACGACTTGTAGGTTGTTTATGTTGGGAAGATGCGTTCAAGGAAG
CATGGCGCTTTTTCTTTGCCAGATGGTGAGAGGAGATTGCCCCTAGGGTA
CCCCTCCGTTTACGGCACATGATTCGGAGGTGTTTTCGATACGTGCTGTT
AAACACACGCCCTTATTTACGAGGAGGGAACGTATTGGTAGCGTTGTTCG
GACTTGTGTGTTTGTGAACGCCCTCATGGCGTCTGGGTCGAAAGGACAGG
TACAGTTGAACGCTACCTATCCCAATGAGTGCGCGCCCTGCCCGTTTTTT
TTTTTACCACGTATGTATGTACGCAAAATGCAACAACTCCATAGAAATCT
TCCTCCCCCTGACGCCGGCCATTCTACGCTGTGCCCCAAATTGTTCCTCG
CATTCCTCGCATTCCTCGCAATTGCCGTGGGATTCCACTACACACCTCAG
AAACCCTTTGATCCCGCGGCAGTAGCCACCGGGGCTAAGGGGGACGGGGG
GTCAGGAAGCGGCGCCGGCGGAGCAGGGGCGGACAGCAGACGGAAGGAAC
CACCACCACCGCTCGCGGGGATAAAGCTCCGGAAGAAAACTTCTCGTTCG
GGCACATCATCATCACCATCGCCATCGCCAGCTGCAGAAGCATCAGGGGT
TTCCTCTCCGCAAACAGGCGGTGGCCAGACCGTAGCAGAAGGAGAGTCTC
CAGGAGCGGGCGGGAAGAGAACGGTCGACACTCACGGCGGGGGAGAAGAG
GGTGAAAGGGGGGCTGAGAAGAAGAGAGAGCGGGAGAACGGGGGAGCGAA
GAAAAGCAAGAAGAAGAAAAGTTCCAAGAAGACCAAGAGTAAGACCAGAA
AGCACAGCAAGAGCGCCCACGAAGGTGGTGGCGGCGTGGGCGGAGAAAGT
GGCAAGGGCGGCGCGGCGGCGGAGGCATCGTCTGGGCTTGGGTTAGGGTT
GGTGGCATACTCGAGCGGGGACGATGATGACGAGGAAAGCTGATGCTCGA
TCATGATGGTTTTTGCGGGGCAAAAGGGTTCTACTAGTATCGCGCCTTTG
TTCCCCGCTGACTCAGGGCGGAACGGCATACACTATCTCATGGTACTATT
TAAGAGGAGGCAGGCGATCGCCCGATTCCTTCATGTTCGTTCATGGAGAC
GAACCATAGTTTGATTAATCACATATTTAGACTGACAAAAGGTTCCACGA
AAGATTAAAATAGCTTCAAGTTGACCCACTTTCGCAGGAGAGACGTTGCG
AACATAGACTATGTTCAGGCATGATAGAGCTTCTTGGTGCAGCGAATTGT
GCAACTCATGCCATGTTGCATGATCATCGTACAGGGCAGCGTTGAAGGTA
TTTGCGTGTCGATAAAGTCGAGGGGTTGGACAACGGGTTCGGGTAGTTCG
TAGGTGAAGCGTCAGATGTGTGGATTTCTTGTGTCGCCAGCAATCAGGGC
GGGTGAGAAGAAGAGGGGCAAAGGAGAACTCTCGGTTTAGGTTTCTCGTG
ATCGATCATTTCGCTCGAGATAATTGAACATCGGCGACAAACATCTCATA
TATCACGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig74:158449..163556- >mRNA_E-siliculosus-1a_M_contig74.15533.1 ID=mRNA_E-siliculosus-1a_M_contig74.15533.1|Name=mRNA_E-siliculosus-1a_M_contig74.15533.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1650bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:158449..163556- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGATCAGCGGAGATTCCACCGCGTCCCACATGGGGAGCGTCAAGATGAT CAGCGGAGATTCCACCGCGTCCCACATGGGGAGCGTCAAGAATATTGAGA AAGCGAGGGAGAGAAGGACTTTCGAAGTTATGCCGGGATCTTCCGCCGCG GATCTTCCGGATGAGCTCCAAGAACAAACGCAGAATATTGAGAAAGCGAG GGAGAGAAGGACTTTCGAAGTTATGCCGGGATCTTCCGCCGCGGATCTTC CGGATGAGCTCCAAGAACAAACGCAGCAGACCATCCACCCTCGGATGGGG TACGATATGTCTGATAGCCTCTTCATGCAGCACCAGGAGGCCGCCGGCAG AGAGAAGGAGTCCAGAAGGGCGTTGGAGGAGAGAGCTGCTCTGGAGGCGT TTCGCGCTGCAGCACTGAAGCAGACCATCCACCCTCGGATGGGGTACGAT ATGTCTGATAGCCTCTTCATGCAGCACCAGGAGGCCGCCGGCAGAGAGAA GGAGTCCAGAAGGGCGTTGGAGGAGAGAGCTGCTCTGGAGGCGTTTCGCG CTGCAGCACTGAAGAAACCCTTTGATCCCGCGGCAGTAGCCACCGGGGCT AAGGGGGACGGGGGGTCAGGAAGCGGCGCCGGCGGAGCAGGGGCGGACAG CAGACGGAAGGAACCACCACCACCGCTCGCGGGGATAAAGCTCCGGAAGA AAACTTCTCGTTCGGGCACATCATCATCACCATCGCCATCGCCAGCTGCA GAAGCATCAGGGGTTTCCTCTCCGCAAACAGGCGGTGGCCAGACCGTAGC AGAAGGAGAGTCTCCAGGAGCGGGCGGGAAGAGAACGGTCGACACTCACG GCGGGGGAGAAGAGGGTGAAAGGGGGGCTGAGAAGAAGAGAGAGCGGGAG AACGGGGGAGCGAAGAAAAGCAAGAAGAAGAAAAGTTCCAAGAAGACCAA GAGTAAGACCAGAAAGCACAGCAAGAGCGCCCACGAAGGTGGTGGCGGCG TGGGCGGAGAAAGTGGCAAGGGCGGCGCGGCGGCGGAGGCATCGTCTGGG CTTGGGTTAGGGTTGGTGGCATACTCGAGCGGGGACGATGATGACGAGGA AAGCTGAAAACCCTTTGATCCCGCGGCAGTAGCCACCGGGGCTAAGGGGG ACGGGGGGTCAGGAAGCGGCGCCGGCGGAGCAGGGGCGGACAGCAGACGG AAGGAACCACCACCACCGCTCGCGGGGATAAAGCTCCGGAAGAAAACTTC TCGTTCGGGCACATCATCATCACCATCGCCATCGCCAGCTGCAGAAGCAT CAGGGGTTTCCTCTCCGCAAACAGGCGGTGGCCAGACCGTAGCAGAAGGA GAGTCTCCAGGAGCGGGCGGGAAGAGAACGGTCGACACTCACGGCGGGGG AGAAGAGGGTGAAAGGGGGGCTGAGAAGAAGAGAGAGCGGGAGAACGGGG GAGCGAAGAAAAGCAAGAAGAAGAAAAGTTCCAAGAAGACCAAGAGTAAG ACCAGAAAGCACAGCAAGAGCGCCCACGAAGGTGGTGGCGGCGTGGGCGG AGAAAGTGGCAAGGGCGGCGCGGCGGCGGAGGCATCGTCTGGGCTTGGGT TAGGGTTGGTGGCATACTCGAGCGGGGACGATGATGACGAGGAAAGCTGA back to top
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