mRNA_E-siliculosus-1a_M_contig74.15532.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig74.15532.1 vs. uniprot
Match: D7FLR0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR0_ECTSI) HSP 1 Score: 184 bits (466), Expect = 1.670e-50 Identity = 304/333 (91.29%), Postives = 308/333 (92.49%), Query Frame = 1
Query: 367 NPWCWAGVECGVGDVQGLRLADNQLQGVLPGASLTNMRGLVTLDLSGNEIGGALPPELGKMVHLQYLRLAVSKLEGPIPDTLGEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEXXNLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXPELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHVVEGCPSYSLPLHRGFNRWLSLVMMSI-LTMLLRHQKPIILLWLPTGMF 1362
NPWCWAGVECGVGDVQGLRL+DNQLQGVLPGA+LTNMRGLVTLDLSGNEIGG LPPELGKMVHLQYLRLAVSKLEGPIP TLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE XNLR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXPE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLHVVEGCPSYSLPL RGF RWLSLV+ + LTM LRHQK ILLWLPTGMF
Sbjct: 9 NPWCWAGVECGVGDVQGLRLSDNQLQGVLPGAALTNMRGLVTLDLSGNEIGGTLPPELGKMVHLQYLRLAVSKLEGPIPGTLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIXNLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHIEVAHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLHVVEGCPSYSLPLRRGFTRWLSLVLRCVNLTMQLRHQKTAILLWLPTGMF 341
BLAST of mRNA_E-siliculosus-1a_M_contig74.15532.1 vs. uniprot
Match: D7FLQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ9_ECTSI) HSP 1 Score: 113 bits (282), Expect = 1.300e-26 Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1
Query: 1 MAASLLRRGSYNSRDIRFELEATIVVFEEEKAAMQKLGPKVEVSPATKRLWQELQQEKIAL 183
MAASLLRRGSYNSRDIRFELEATIVVFEEEKAAMQKLGPKVEVSPATKRLWQELQQEK+++
Sbjct: 45 MAASLLRRGSYNSRDIRFELEATIVVFEEEKAAMQKLGPKVEVSPATKRLWQELQQEKVSV 105
BLAST of mRNA_E-siliculosus-1a_M_contig74.15532.1 vs. uniprot
Match: A0A6H5K666_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K666_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.900e-20 Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1
Query: 475 MRGLVTLDLSGNEIGGALPPELGKMVHLQYLRLAVSKLEGPIPDTLGEI 621
MRGLVTLDLSGNEIGG LPPELGKM++LQYLRLAVSKLEGPIPDTLGEI
Sbjct: 1 MRGLVTLDLSGNEIGGTLPPELGKMLNLQYLRLAVSKLEGPIPDTLGEI 49
BLAST of mRNA_E-siliculosus-1a_M_contig74.15532.1 vs. uniprot
Match: A0A438JV57_VITVI (Receptor-like protein 12 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JV57_VITVI) HSP 1 Score: 60.8 bits (146), Expect = 7.620e-7 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 418 LRLADNQLQGVLPGASLTNMRGLVTLDLSGNEIGGALPPELGKMVHLQYLRLAVSKLEGPIPDTLG 615
L +++N +QG +P N+ LV+LD+SGN G++PP+L + LQYL L + L G IP+ +G
Sbjct: 112 LYISNNNIQGEIPAVGFANLSNLVSLDMSGNNFSGSIPPQLFHLPLLQYLNLDRNSLSGKIPEEIG 177 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig74.15532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig74.15532.1 >prot_E-siliculosus-1a_M_contig74.15532.1 ID=prot_E-siliculosus-1a_M_contig74.15532.1|Name=mRNA_E-siliculosus-1a_M_contig74.15532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=455bp MAASLLRRGSYNSRDIRFELEATIVVFEEEKAAMQKLGPKVEVSPATKRLback to top mRNA from alignment at E-siliculosus-1a_M_contig74:150970..157381+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig74.15532.1 ID=mRNA_E-siliculosus-1a_M_contig74.15532.1|Name=mRNA_E-siliculosus-1a_M_contig74.15532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6412bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:150970..157381+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig74:150970..157381+ >mRNA_E-siliculosus-1a_M_contig74.15532.1 ID=mRNA_E-siliculosus-1a_M_contig74.15532.1|Name=mRNA_E-siliculosus-1a_M_contig74.15532.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2730bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig74:150970..157381+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |