mRNA_E-siliculosus-1a_M_contig731.15524.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig731.15524.1
Unique NamemRNA_E-siliculosus-1a_M_contig731.15524.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 5.590e-29
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 RQVSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            RQVSGPYNCAQFTVELY NLVGSCKWGTAGQLMDAVRE GKELVAAKPSELAVGNMVR
Sbjct:   81 RQVSGPYNCAQFTVELYRNLVGSCKWGTAGQLMDAVREVGKELVAAKPSELAVGNMVR 138
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.280e-18
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 RQVSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            RQVSGPY+CA+ T+EL    VG+CKW TA QLM+ +R  G+EL+AAKPSELAVGN+VR
Sbjct:   49 RQVSGPYHCAKATLELLRYTVGTCKWATAAQLMELIRAVGRELIAAKPSELAVGNVVR 106
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: A0A7S3H5H0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5H0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.220e-10
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RQVSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            RQ+SG + CA+ T+E+  NL+G   + +A  +M  VR  G+EL+AA PSEL +GN+VR
Sbjct:    2 RQLSGAHQCAKATIEILRNLLGRYNFSSADHMMKVVRAVGRELIAAAPSELTIGNLVR 59
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: UPI0014259841 (translation initiation factor eIF-2B subunit beta-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259841)

HSP 1 Score: 61.6 bits (148), Expect = 1.190e-9
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    4 QVSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            QV G Y+ A  TV+L   +V   +W  AG LMD +R+EG++++AA+PSE A+GN+VR
Sbjct:   96 QVVGSYDVANKTVKLLRRVVSQTRWNHAGDLMDRIRKEGRKMMAAQPSESAIGNVVR 152
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: UPI001E1DDAA6 (translation initiation factor eIF-2B subunit beta-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDAA6)

HSP 1 Score: 57.4 bits (137), Expect = 3.620e-8
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    7 VSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            + G +N A  TV L   ++   KW  A +LMD V+ EG++++AA+PSE A+GNMVR
Sbjct:   28 IQGSFNVAYKTVSLMVRIISQTKWMNAKELMDIVKTEGQKMMAAQPSESAIGNMVR 83
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: UPI0005F57F28 (translation initiation factor eIF-2B subunit beta isoform X1 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F57F28)

HSP 1 Score: 57.0 bits (136), Expect = 4.960e-8
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    4 QVSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            ++ G YN    T+ ++  ++ + +WGTA  LMD VR+ GK L+ + P E  +GNMVR
Sbjct:   23 EIKGTYNIVVATISMFKEIISNTEWGTAKDLMDIVRQNGKYLIKSLPLETCIGNMVR 79
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: A0A8D0H6J8_SPHPU (Eukaryotic translation initiation factor 2B subunit beta n=5 Tax=Sauria TaxID=32561 RepID=A0A8D0H6J8_SPHPU)

HSP 1 Score: 55.5 bits (132), Expect = 1.740e-7
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   28 AQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            A+  + L   ++G+ +WG+AG+LM+ +R+EG+ ++AA+PSE  VGNMVR
Sbjct:   35 ARQALGLLRRIIGNGRWGSAGELMELIRKEGRRMMAAEPSETTVGNMVR 83
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: A0A075ASJ4_ROZAC (Initiation factor 2B-related domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075ASJ4_ROZAC)

HSP 1 Score: 55.1 bits (131), Expect = 2.440e-7
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 RQVSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            R++ G +NC   T +L   +V   +W  A  LM  +++ GKELV A+P+E+ VGN+VR
Sbjct:   21 REIKGSWNCGVETAKLLRLVVSITRWNNASTLMQIIKDVGKELVKAQPTEIVVGNIVR 78
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: F7DQ88_MONDO (Uncharacterized protein n=1 Tax=Monodelphis domestica TaxID=13616 RepID=F7DQ88_MONDO)

HSP 1 Score: 52.8 bits (125), Expect = 1.060e-6
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   28 AQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            AQ TV L   +V   +W  AG+LM+ +R+EG+++ AA+P E  VGNMVR
Sbjct:   35 AQETVGLLHQIVAHGRWSNAGELMELIRKEGRQMTAAQPLETTVGNMVR 83
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BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Match: H2Z4N0_CIOSA (Uncharacterized protein n=2 Tax=Ciona savignyi TaxID=51511 RepID=H2Z4N0_CIOSA)

HSP 1 Score: 53.1 bits (126), Expect = 1.150e-6
Identity = 23/55 (41.82%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   10 SGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSELAVGNMVR 174
            +G Y+ A  T+     ++   +W  A +LM+ +R+EGK++VAA+PSE  VGN+VR
Sbjct:   14 NGSYDLAYKTINHLRKVISQTRWAHAQELMNTIRKEGKQIVAAQPSEYVVGNIVR 68
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig731.15524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHD8_ECTSI5.590e-2996.55Eukaryotic translation initiation factor 2B beta s... [more]
A0A836CBW3_9STRA6.280e-1867.24Eukaryotic translation initiation factor 2B beta s... [more]
A0A7S3H5H0_9STRA6.220e-1048.28Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00142598411.190e-949.12translation initiation factor eIF-2B subunit beta-... [more]
UPI001E1DDAA63.620e-846.43translation initiation factor eIF-2B subunit beta-... [more]
UPI0005F57F284.960e-840.35translation initiation factor eIF-2B subunit beta ... [more]
A0A8D0H6J8_SPHPU1.740e-746.94Eukaryotic translation initiation factor 2B subuni... [more]
A0A075ASJ4_ROZAC2.440e-741.38Initiation factor 2B-related domain-containing pro... [more]
F7DQ88_MONDO1.060e-648.98Uncharacterized protein n=1 Tax=Monodelphis domest... [more]
H2Z4N0_CIOSA1.150e-641.82Uncharacterized protein n=2 Tax=Ciona savignyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig731contigE-siliculosus-1a_M_contig731:11001..11174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size174
Model size174
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko01000,ko02000,ko03012,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC2.3.2.27
EggNOG OGsCOG1184@1,KOG1465@2759
EggNOG free text desc.translation initiation factor activity
GOsGO:0000003,GO:0000166,GO:0001541,GO:0001558,GO:0001666,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008361,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014003,GO:0016043,GO:0017076,GO:0019001,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030516,GO:0030554,GO:0030900,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032045,GO:0032268,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032991,GO:0033554,GO:0034248,GO:0034284,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036293,GO:0036294,GO:0040008,GO:0042063,GO:0042221,GO:0042552,GO:0042995,GO:0043005,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051239,GO:0051240,GO:0051246,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0120025,GO:0120035,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000026,GO:2000112
KEGG Pathwayko00604,ko01100,ko03013,map00604,map01100,map03013
KEGG TC2.A.1.25
KEGG koko:K03372,ko:K03754,ko:K19041
Preferred nameEIF2B2
Seed eggNOG ortholog2880.D8LHD8
Seed ortholog evalue3.6e-24
Seed ortholog score116.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936020.2788668-CDS-E-siliculosus-1a_M_contig731:11000..111741622936020.2788668-CDS-E-siliculosus-1a_M_contig731:11000..11174Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig731 11001..11174 +
1696250894.8715281-CDS-E-siliculosus-1a_M_contig731:11000..111741696250894.8715281-CDS-E-siliculosus-1a_M_contig731:11000..11174Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig731 11001..11174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig731.15524.1prot_E-siliculosus-1a_M_contig731.15524.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig731 11001..11174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig731.15524.1

>prot_E-siliculosus-1a_M_contig731.15524.1 ID=prot_E-siliculosus-1a_M_contig731.15524.1|Name=mRNA_E-siliculosus-1a_M_contig731.15524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=58bp
RQVSGPYNCAQFTVELYGNLVGSCKWGTAGQLMDAVREEGKELVAAKPSE
LAVGNMVR
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mRNA from alignment at E-siliculosus-1a_M_contig731:11001..11174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig731.15524.1 ID=mRNA_E-siliculosus-1a_M_contig731.15524.1|Name=mRNA_E-siliculosus-1a_M_contig731.15524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=174bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig731:11001..11174+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGCAAGTGAGCGGACCCTACAACTGCGCCCAGTTCACCGTGGAGCTCTA
CGGCAACCTTGTCGGCTCCTGTAAGTGGGGCACCGCGGGGCAGCTCATGG
ACGCGGTCAGGGAGGAGGGGAAGGAGCTCGTGGCCGCGAAGCCCTCGGAG
CTCGCCGTCGGGAACATGGTGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig731:11001..11174+

>mRNA_E-siliculosus-1a_M_contig731.15524.1 ID=mRNA_E-siliculosus-1a_M_contig731.15524.1|Name=mRNA_E-siliculosus-1a_M_contig731.15524.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig731:11001..11174+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGCAAGTGAGCGGACCCTACAACTGCGCCCAGTTCACCGTGGAGCTCTA
CGGCAACCTTGTCGGCTCCTGTAAGTGGGGCACCGCGGGGCAGCTCATGG
ACGCGGTCAGGGAGGAGGGGAAGGAGCTCGTGGCCGCGAAGCCCTCGGAG
CTCGCCGTCGGGAACATGGTGAGGAGGCAAGTGAGCGGACCCTACAACTG
CGCCCAGTTCACCGTGGAGCTCTACGGCAACCTTGTCGGCTCCTGTAAGT
GGGGCACCGCGGGGCAGCTCATGGACGCGGTCAGGGAGGAGGGGAAGGAG
CTCGTGGCCGCGAAGCCCTCGGAGCTCGCCGTCGGGAACATGGTGAGG
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