mRNA_E-siliculosus-1a_M_contig73.15520.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig73.15520.1
Unique NamemRNA_E-siliculosus-1a_M_contig73.15520.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig73.15520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig73contigE-siliculosus-1a_M_contig73:768227..769452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size411
Model size1226
Exons1
Ec32 orthologEc-00_005140.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig73.15520.1prot_E-siliculosus-1a_M_contig73.15520.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig73 768882..769292 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936019.453167-UTR-E-siliculosus-1a_M_contig73:768226..7688811622936019.453167-UTR-E-siliculosus-1a_M_contig73:768226..768881Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 768227..768881 +
1696250894.4118164-UTR-E-siliculosus-1a_M_contig73:768226..7688811696250894.4118164-UTR-E-siliculosus-1a_M_contig73:768226..768881Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 768227..768881 +
1622936019.4941204-UTR-E-siliculosus-1a_M_contig73:769292..7694521622936019.4941204-UTR-E-siliculosus-1a_M_contig73:769292..769452Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 769293..769452 +
1696250894.432435-UTR-E-siliculosus-1a_M_contig73:769292..7694521696250894.432435-UTR-E-siliculosus-1a_M_contig73:769292..769452Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 769293..769452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936019.4756894-CDS-E-siliculosus-1a_M_contig73:768881..7692921622936019.4756894-CDS-E-siliculosus-1a_M_contig73:768881..769292Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 768882..769292 +
1696250894.4222002-CDS-E-siliculosus-1a_M_contig73:768881..7692921696250894.4222002-CDS-E-siliculosus-1a_M_contig73:768881..769292Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 768882..769292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig73.15520.1

>prot_E-siliculosus-1a_M_contig73.15520.1 ID=prot_E-siliculosus-1a_M_contig73.15520.1|Name=mRNA_E-siliculosus-1a_M_contig73.15520.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=137bp
MRWTKGELPSAPLSSLELVLSGVLVLLSFDCLVLYVVLSSRSVCLVCLSV
RMSCLSCLVLSSCVCDLSNILFCLSCWCCSKEMGVIRFHTHTHTHARAFV
RNREVVQLGVPHQKRNTRARGGQRRREGRFRLLLLV*
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mRNA from alignment at E-siliculosus-1a_M_contig73:768227..769452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig73.15520.1 ID=mRNA_E-siliculosus-1a_M_contig73.15520.1|Name=mRNA_E-siliculosus-1a_M_contig73.15520.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1226bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:768227..769452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCGATCATCCGCACGATTTTGTGCGCGGCGGTGTTGGAGGAGAGAAGCGT
TTTCTGTGGATGGATTGGCGAATGGAAATCCCGGGCAAAAGGAGAAAGGC
GGGGCTGGCGGTGGCGTGCTTTGTGCTTGTGCGTGTGCGTTTCGTTGTAT
CGCGTGATCTTGTTGCTGTGTCATATCGCCGTGCTGGCTGCGAGAAAAAA
CGAGGACAACAGTTCGGTGGGTGTTGTTCTTGTTATTTTATGGCGTAACC
CAGTCTTGTCCCGGAACGAGCTACGTAGCTAACTGGTTTCGTTGCGCCCC
CATCCCGGTTGTTTGTTGCTGCTTTACCGCTTATTTCGTCTTTTTTTGTT
TTTGTTGGAAGTTGTTGCCCGTGACACCCTTTTGGTTGTTTCCCTACAGG
TACATGAAAAGAAAAACATGCACCGTACCTCGCCTTCTGAGAAAAGCCAA
CGCTGACTAGTTCGCGGGAAAAAAGCAGGGTGCCGTGTAAACAACCAACC
CGGCCGTCTCTGTGGGGGGTCGGTGTTCTGTGGGAGAAGGAGGATATAAC
TTGGGTGTTTGGGGGGCGTTGTTTTCGACTTATTCCGTGTGGTTTCTCGC
GGGCTCTCGGGCGCTATCAATTGAATCGACCGCTCGGTCGAGAACGTAGC
AGCAGATGAGATGGACAAAAGGGGAGCTTCCATCCGCCCCCCTGTCCTCT
CTTGAGCTAGTTCTGTCCGGCGTTCTGGTGCTTCTGTCTTTTGACTGTCT
TGTCTTGTACGTCGTTCTGTCCAGCCGTTCTGTCTGTCTCGTCTGTCTGT
CCGTGCGTATGTCTTGTCTGTCTTGTCTAGTTCTGTCTTCTTGTGTGTGT
GATTTGTCTAATATCTTGTTTTGTCTGTCGTGTTGGTGCTGCTCGAAGGA
GATGGGTGTCATCAGGTTCCACACACACACACACACACACGCGCGCGCGT
TTGTACGGAACCGGGAGGTTGTTCAGTTGGGGGTGCCACATCAAAAGAGA
AATACGCGAGCAAGGGGCGGGCAGAGGAGGCGGGAGGGAAGGTTTCGTTT
GCTCCTTTTGGTTTAAGTTGTATGCATATCGTGGCTTGTTTTTCTCGGAC
AATGTACCGTCATATAGTTCACAAAGGGTGCTCAACTTGTGGAGGCGCTG
GCCCCAGGTATTTTCCGTTTGCCTTGGTTTTTCTCATCATGATCTCATGA
TTGCAATCTTGGAAACCCTGTCTGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig73:768227..769452+

>mRNA_E-siliculosus-1a_M_contig73.15520.1 ID=mRNA_E-siliculosus-1a_M_contig73.15520.1|Name=mRNA_E-siliculosus-1a_M_contig73.15520.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=822bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:768227..769452+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGATGGACAAAAGGGGAGCTTCCATCCGCCCCCCTGTCCTCTCTTGA
GCTAGTTCTGTCCGGCGTTCTGGTGCTTCTGTCTTTTGACTGTCTTGTCT
TGTACGTCGTTCTGTCCAGCCGTTCTGTCTGTCTCGTCTGTCTGTCCGTG
CGTATGTCTTGTCTGTCTTGTCTAGTTCTGTCTTCTTGTGTGTGTGATTT
GTCTAATATCTTGTTTTGTCTGTCGTGTTGGTGCTGCTCGAAGGAGATGG
GTGTCATCAGGTTCCACACACACACACACACACACGCGCGCGCGTTTGTA
CGGAACCGGGAGGTTGTTCAGTTGGGGGTGCCACATCAAAAGAGAAATAC
GCGAGCAAGGGGCGGGCAGAGGAGGCGGGAGGGAAGGTTTCGTTTGCTCC
TTTTGGTTTAAATGAGATGGACAAAAGGGGAGCTTCCATCCGCCCCCCTG
TCCTCTCTTGAGCTAGTTCTGTCCGGCGTTCTGGTGCTTCTGTCTTTTGA
CTGTCTTGTCTTGTACGTCGTTCTGTCCAGCCGTTCTGTCTGTCTCGTCT
GTCTGTCCGTGCGTATGTCTTGTCTGTCTTGTCTAGTTCTGTCTTCTTGT
GTGTGTGATTTGTCTAATATCTTGTTTTGTCTGTCGTGTTGGTGCTGCTC
GAAGGAGATGGGTGTCATCAGGTTCCACACACACACACACACACACGCGC
GCGCGTTTGTACGGAACCGGGAGGTTGTTCAGTTGGGGGTGCCACATCAA
AAGAGAAATACGCGAGCAAGGGGCGGGCAGAGGAGGCGGGAGGGAAGGTT
TCGTTTGCTCCTTTTGGTTTAA
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