mRNA_E-siliculosus-1a_M_contig73.15519.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig73.15519.1 vs. uniprot
Match: D8LMP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMP3_ECTSI) HSP 1 Score: 358 bits (919), Expect = 1.300e-115 Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1
Query: 598 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLMDETGAKPGDVFHDGVGMSQRFEIKKLIRQRYNLMAEGFRNTRAAYVKVWMDLERKNMDQAQSALEVELLWGQLERREKELNMSKVGARDLGHAVKQLKTALETNRTTIREKNSRIKALEERLANLSVSAVSGEVVAPGRPPATVLS 1590
RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLMDETGAKPGDVFHDGVGMSQRFEIKKLIRQRYNLMAEGFRNTRAAYVKVWMDLERKNMDQAQSALEVELLWGQLERREKELNMSKVGARDLGHAVKQLKTALETNRTTIREKNSRIKALEERLANLSVSAVSGEVVAPGRPPATVLS
Sbjct: 86 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLMDETGAKPGDVFHDGVGMSQRFEIKKLIRQRYNLMAEGFRNTRAAYVKVWMDLERKNMDQAQSALEVELLWGQLERREKELNMSKVGARDLGHAVKQLKTALETNRTTIREKNSRIKALEERLANLSVSAVSGEVVAPGRPPATVLS 416
BLAST of mRNA_E-siliculosus-1a_M_contig73.15519.1 vs. uniprot
Match: D7FY56_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY56_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 3.900e-15 Identity = 195/301 (64.78%), Postives = 231/301 (76.74%), Query Frame = 1
Query: 565 GSGVDIHGAVERGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLMDETGAKPGDVFHDGVGMSQRFEIKKLIRQRYNLMAEGFRNTRAAYVKVWMDLERKNMDQAQSALEVELLWGQLERREKELNMSKVGARDLGHAVKQLKTALETNR 1467
G +DIH AV + +++Y+ GGDL+R D +N LHIA AG F V + L+ A ++ ++I H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +E K G+ F V +Q+ +IK L+++R L+ +G+ R ++M ER +++ S EVE LWG+L +REKELNMSK+GARDL HAVK +K+ALE R
Sbjct: 12 GGSIDIHQAVAHNREDQIKQYVDAGGDLDRRDGNNLAPLHIAAAGGFCNVVEFLLMHKAGVDVTSKIGHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVANEDNVKAGETFLPEVPEAQQGQIKVLLKERQPLLMKGYEAARRNMALMYMRSERSDLNLRMSQGEVETLWGKLAKREKELNMSKMGARDLSHAVKAMKSALEQGR 312
BLAST of mRNA_E-siliculosus-1a_M_contig73.15519.1 vs. uniprot
Match: A0A6H5JR84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR84_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.450e-14 Identity = 193/301 (64.12%), Postives = 231/301 (76.74%), Query Frame = 1
Query: 565 GSGVDIHGAVERGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLMDETGAKPGDVFHDGVGMSQRFEIKKLIRQRYNLMAEGFRNTRAAYVKVWMDLERKNMDQAQSALEVELLWGQLERREKELNMSKVGARDLGHAVKQLKTALETNR 1467
G +DIH AV + +++Y+ GGDL++ D +N LHIA AG F V + L+ A ++ ++I H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +E K G+ F + +Q+ +IK L+++R L+ +G+ R ++M ER +++ S EVE LWG+L +REKELNMSK+GARDL HAVK +K+ALE R
Sbjct: 12 GGSIDIHLAVAHNREDQIKQYVDAGGDLDKRDGNNLAPLHIAAAGGFCNVVEFLLKHKAGVDVTSKIGHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVANEENVKAGETFLPEIPEAQQGQIKVLLKERQPLLMKGYEAARRNMALMYMRSERSDLNLRMSQGEVETLWGKLAKREKELNMSKMGARDLSHAVKAMKSALEQGR 312
BLAST of mRNA_E-siliculosus-1a_M_contig73.15519.1 vs. uniprot
Match: A0A6H5KQT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT1_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.750e-10 Identity = 44/71 (61.97%), Postives = 47/71 (66.20%), Query Frame = -3
Query: 141 MATQSSLTLPLQLLLPQLSQKTPRQSDAASL*RR*TISCFACETEQVGFFALLFLPPSSLRLALCRAVLFG 353
MATQSSLTL LQ+LLPQ SQK PRQS AAS A + GF + L LPPSSL LAL RAVLFG
Sbjct: 1 MATQSSLTLHLQMLLPQPSQKNPRQSGAASKTIDYLCLVSAARPNKWGFLSPL-LPPSSLGLALYRAVLFG 70
BLAST of mRNA_E-siliculosus-1a_M_contig73.15519.1 vs. uniprot
Match: A0A835YKV0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV0_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 3.080e-9 Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1147 LMDETGAKPGDVFHDGVGMSQRFEIKKLIRQRYNLMAEGFRNTRAAYVKVWMDLERKNM 1323
++D G KP + F D V ++ RFEIKKL+RQR LMAEG+ R YV +W ++E KNM
Sbjct: 80 VVDAAGTKPAETFSDKVPVASRFEIKKLVRQRPVLMAEGYSELRRRYVVMWKEVEAKNM 138
BLAST of mRNA_E-siliculosus-1a_M_contig73.15519.1 vs. uniprot
Match: A0A0S7YJC2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium DG_20 TaxID=1703413 RepID=A0A0S7YJC2_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 6.270e-5 Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 1
Query: 574 VDIHGAVERGDLESVQKYIATGGDLER------MDWDNCTALHIACAGAFSQVAQLLINKGANLNAKTRIEH 771
+DI A RG++ + ++Y+A GGD++ + T LHIA VAQLLI ANLNAK R EH
Sbjct: 1 MDIWTAASRGNVRAARRYLAAGGDVDATVDAPGIPVSGATPLHIAVLCDQGDVAQLLIENRANLNAKARDEH 72 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig73.15519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig73.15519.1 >prot_E-siliculosus-1a_M_contig73.15519.1 ID=prot_E-siliculosus-1a_M_contig73.15519.1|Name=mRNA_E-siliculosus-1a_M_contig73.15519.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=361bp MSAMATEPPGGGGDAANRGSGVDIHGAVERGDLESVQKYIATGGDLERMDback to top mRNA from alignment at E-siliculosus-1a_M_contig73:754619..767077+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig73.15519.1 ID=mRNA_E-siliculosus-1a_M_contig73.15519.1|Name=mRNA_E-siliculosus-1a_M_contig73.15519.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12459bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:754619..767077+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig73:754619..767077+ >mRNA_E-siliculosus-1a_M_contig73.15519.1 ID=mRNA_E-siliculosus-1a_M_contig73.15519.1|Name=mRNA_E-siliculosus-1a_M_contig73.15519.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2166bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:754619..767077+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |