mRNA_E-siliculosus-1a_M_contig73.15517.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig73.15517.1
Unique NamemRNA_E-siliculosus-1a_M_contig73.15517.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig73.15517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig73contigE-siliculosus-1a_M_contig73:747314..747936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size240
Model size417
Exons2
Ec32 orthologEc-00_005170.1
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig73.15517.1prot_E-siliculosus-1a_M_contig73.15517.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig73 747314..747760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935997.6906288-CDS-E-siliculosus-1a_M_contig73:747313..7474971622935997.6906288-CDS-E-siliculosus-1a_M_contig73:747313..747497Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 747314..747497 +
1696250883.413484-CDS-E-siliculosus-1a_M_contig73:747313..7474971696250883.413484-CDS-E-siliculosus-1a_M_contig73:747313..747497Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 747314..747497 +
1622935997.7638807-CDS-E-siliculosus-1a_M_contig73:747704..7477601622935997.7638807-CDS-E-siliculosus-1a_M_contig73:747704..747760Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 747705..747760 +
1696250883.4215076-CDS-E-siliculosus-1a_M_contig73:747704..7477601696250883.4215076-CDS-E-siliculosus-1a_M_contig73:747704..747760Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 747705..747760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935997.783782-UTR-E-siliculosus-1a_M_contig73:747760..7479361622935997.783782-UTR-E-siliculosus-1a_M_contig73:747760..747936Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 747761..747936 +
1696250883.4294071-UTR-E-siliculosus-1a_M_contig73:747760..7479361696250883.4294071-UTR-E-siliculosus-1a_M_contig73:747760..747936Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 747761..747936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig73.15517.1

>prot_E-siliculosus-1a_M_contig73.15517.1 ID=prot_E-siliculosus-1a_M_contig73.15517.1|Name=mRNA_E-siliculosus-1a_M_contig73.15517.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=80bp
NNNNVAKAPNAHWINPGYSKYYPATAPTPHPCSITRAYPEPPLLIARRNA
AAAAAGETASGGVSAGGAACVFRQRLPRD*
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mRNA from alignment at E-siliculosus-1a_M_contig73:747314..747936+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig73.15517.1 ID=mRNA_E-siliculosus-1a_M_contig73.15517.1|Name=mRNA_E-siliculosus-1a_M_contig73.15517.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=623bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:747314..747936+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACAACAACAACGTCGCCAAGGCCCCAAACGCGCATTGGATCAACCCCGG
CTACTCCAAGTACTACCCCGCCACGGCCCCTACGCCGCACCCCTGTAGCA
TCACCAGGGCCTACCCAGAGCCACCCCTGCTGATCGCGCGGCGCAACGCA
GCAGCTGCAGCTGCAGGAGAAACAGCATCGGGAGGTGTGCGCTGGTGTGG
GGCTTGAGCTTCTCGTCCATAATTGACGTGTTTAGCCGCAATCTGTAGTA
CCCAATTCGTCACGTCGGCCGGCTGATCGTGAATGGTTTCGTGTATCTCA
TGCTCCTCGAAGAGACCTTTACCAACTTTAAACTCTTTGCGTTTTTGGGC
CATTGGACGATGGTTTTTCGGTTTGTTCTCAATCTGTCTAGGTGTTTCCG
CCGGCGGTGCTGCTTGCGTCTTCCGTCAGCGCTTGCCTCGGGACTGAAGC
GTCGTGCTCCTGAGAAGCCGGTCGTTCGACCGAAGTGAAACTTACGGGAG
AGCGGGAAGAGAACTCGATATTTACCGCTTCAACCGTTTCGCATAATCGT
GCCCCCCCCCTCACCAGTCTCAGGCGGCGGTAGTAGTAGCGGTAACGGAC
CGAGGAGCAACCGCAAACGGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig73:747314..747936+

>mRNA_E-siliculosus-1a_M_contig73.15517.1 ID=mRNA_E-siliculosus-1a_M_contig73.15517.1|Name=mRNA_E-siliculosus-1a_M_contig73.15517.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:747314..747936+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACAACAACAACGTCGCCAAGGCCCCAAACGCGCATTGGATCAACCCCGG
CTACTCCAAGTACTACCCCGCCACGGCCCCTACGCCGCACCCCTGTAGCA
TCACCAGGGCCTACCCAGAGCCACCCCTGCTGATCGCGCGGCGCAACGCA
GCAGCTGCAGCTGCAGGAGAAACAGCATCGGGAGAACAACAACAACGTCG
CCAAGGCCCCAAACGCGCATTGGATCAACCCCGGCTACTCCAAGTACTAC
CCCGCCACGGCCCCTACGCCGCACCCCTGTAGCATCACCAGGGCCTACCC
AGAGCCACCCCTGCTGATCGCGCGGCGCAACGCAGCAGCTGCAGCTGCAG
GAGAAACAGCATCGGGAGGTGTTTCCGCCGGCGGTGCTGCTTGCGTCTTC
CGTCAGCGCTTGCCTCGGGACTGAGTGTTTCCGCCGGCGGTGCTGCTTGC
GTCTTCCGTCAGCGCTTGCCTCGGGACTGA
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