mRNA_E-siliculosus-1a_M_contig73.15480.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig73.15480.1
Unique NamemRNA_E-siliculosus-1a_M_contig73.15480.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig73.15480.1 vs. uniprot
Match: D7FRX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.410e-24
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 MPDVIKPGPPNXXXXXXXXXXXXXENGAVTMDLMGSGRDFPLQVLMLVLVLLGWLHANGLPLCHC 195
            MPDV+KPGPP+             ENGAVTMDLMGSGRDFPLQVL+LVLVLLGWLHANGLPLCHC
Sbjct:    1 MPDVVKPGPPSNGGDADGGGEDEQENGAVTMDLMGSGRDFPLQVLILVLVLLGWLHANGLPLCHC 65
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig73.15480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRX9_ECTSI1.410e-2475.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig73contigE-siliculosus-1a_M_contig73:358355..362491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size198
Model size1102
Exons2
Ec32 orthologEc-03_003550.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig73.15480.1prot_E-siliculosus-1a_M_contig73.15480.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig73 358355..361587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936009.1172972-CDS-E-siliculosus-1a_M_contig73:358354..3584831622936009.1172972-CDS-E-siliculosus-1a_M_contig73:358354..358483Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 358355..358483 +
1696250889.2996953-CDS-E-siliculosus-1a_M_contig73:358354..3584831696250889.2996953-CDS-E-siliculosus-1a_M_contig73:358354..358483Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 358355..358483 +
1622936009.1345556-CDS-E-siliculosus-1a_M_contig73:361518..3615871622936009.1345556-CDS-E-siliculosus-1a_M_contig73:361518..361587Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 361519..361587 +
1696250889.310579-CDS-E-siliculosus-1a_M_contig73:361518..3615871696250889.310579-CDS-E-siliculosus-1a_M_contig73:361518..361587Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 361519..361587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936009.1507847-UTR-E-siliculosus-1a_M_contig73:361587..3624911622936009.1507847-UTR-E-siliculosus-1a_M_contig73:361587..362491Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 361588..362491 +
1696250889.3219812-UTR-E-siliculosus-1a_M_contig73:361587..3624911696250889.3219812-UTR-E-siliculosus-1a_M_contig73:361587..362491Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig73 361588..362491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig73.15480.1

>prot_E-siliculosus-1a_M_contig73.15480.1 ID=prot_E-siliculosus-1a_M_contig73.15480.1|Name=mRNA_E-siliculosus-1a_M_contig73.15480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=66bp
MPDVIKPGPPNNGGGADGGGEEEQENGAVTMDLMGSGRDFPLQVLMLVLV
LLGWLHANGLPLCHC*
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mRNA from alignment at E-siliculosus-1a_M_contig73:358355..362491+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig73.15480.1 ID=mRNA_E-siliculosus-1a_M_contig73.15480.1|Name=mRNA_E-siliculosus-1a_M_contig73.15480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4137bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:358355..362491+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGGACGTCATCAAGCCCGGGCCGCCTAACAATGGTGGGGGTGCTGA
CGGTGGGGGTGAGGAAGAGCAGGAGAATGGAGCTGTGACAATGGATTTGA
TGGGATCTGGACGCGACTTTCCTCTTCAGGTACGTGAGCTGGAAAGCTTG
CTCGGAGTTCCAGCTATCTGCTGGTGTTCTATCTTCCTGGCAGTCATGTT
GAGGCTCTTGGATGTGTAGTCTGCTCAACAGCTCCCTTTGCGTACAAGTA
CGAACGTACGAACTTTAGTCTGCGTAGGACACTTGACCTGCACCTAACGC
GTCTATGGTGAAACAATAGAGCAAACGGAAGTTGGCGTGTACCCCTGGAA
GGTTGTGAACAGTAACCTACTGTGTTTACTGCTGTGCGATTTATCTTGGT
TTGAGATACTCCGGAGTACACCATGTGCTTGCAAAGTAGTTGTAGATGAG
GAGCGCGACATGGTCGGGATACGGACGCGGAGGGAGAGCACATGCTTGGC
CACGGAAATGCAAGCAGGAGGATGCCCTGACAGGGCCAAACTTCCATCCA
TCACCACGAACAAGCGTTTCTGTAGGTGGCGGCTATTCTGTCTCTGGCAA
ATGTCCAACGAATCAGTACATGACTTAACAAGATTAAGGCTACGCAGGCT
GGCAAATGTACCGGGAGAAAGGTTTTAGACTTTAATTTCGCGGGCGAAGC
CCGCTATTTTTATACATGTGTGAAACCCAATTATCTGCGGGCCGCAGGCT
TTCAAAATGTTGGGCATCTCCGAATAAATGAACGAAAGTAGATATCAGAA
CAGAGGTGTCGTCACCGCGGCAGCAAAGCAAGAAATCACCGTGCAGATAT
GTATGCTGCTAAATGTGCGGGTCGTCAACATACAAACGAGATGATGATGG
GGCGTTCGTTCCAAAGATCCCAGATGGAGTCAAGAGAGCGAAGAAGAAGG
AAGATGATAATCAACAGATAGATCGGACAGAGATGCCACAGCATCATCGT
TATCACGTTACTTGAAGTTGTCTGGCGAGAGGACGGGCGTGCAGACGTGC
AGACGATGTATAAACATACGCGCATCCCTGGGCGTGGATTTTCTGCTGTA
GCTCGACATCAATATGCGCGTGTGCGTGTGTGGGTGATCTCCTTCCTCGC
TGTTCAAGCTTTTTAGAAAGTTAACATAGCCTCACAGAAAGACGACCCGT
TCGAGATTTAACCCCAGTCGAAAGGGATGTGTTGAAGTCTTTTCAGTAAG
TGGATTGAAACCGACTGGAAACTGGGCTTATTTTGAGTTTGTGTAAGCCT
TACACCGAGTTATATCAATCAGTGATGCCAATTGGCGCAAGAACAAAATC
ATCTGTATAGGTGGATACATTCTTAACACATCCCCTGTTGTAGTTCGCTA
CTGCTGGGTCGACGACAGAACTATCGGGGAGAAGCTCTCTGTTTGTGTCG
TGTGTTACAGAATGTGGCCTTCACAGGGAACACGGCGCAGTGTCGTTTGA
CAACTTGCCGTTTGTAGGAAGTACTGTTGTTTAGACTATTTGAATGTAGC
TACACAGTAGCAGCTTCTTCTTCTTGGTGCTGCTTCTGCGTGCTCGTTAT
CGACACTCAAGTGTGGGTTGACGTTGCGAAACTTCGTACACACAGAGACC
CGAGGTCTCTGCTGGGTCTATCCCGCTGTGGGCGTGTGGTATGCGCCAGT
TGCTGCTCCCAGGCTCCTGGCTGATGTGTCTTGGTCTGTGAGCTGGTTGT
TCGAATGCTGTGCCCACAAGAAAGCGGAGTAATTGCCAATATTACTCGAA
AATAGACAAGACGCCAAGTAGGAGCCAAGTTAAAATGGAGACAGCTGATT
GGCCGGCGCCAAGTTAAATCTGTCCCGGTGGCTTTTTTTGCTGGCGCAAG
GCTCCTCACAAAAAAAGCGTTGTAAAAAGGGGATGGCGTTTCGCAGAACC
AAACGAAACAACTTGAATTTTAGTGAGGGATTTGCGCAAAAGCACTAAGC
TTTTATACGGGAGGGCGAAAAAAAGACCGCAAAAGCATCGTGACGTTTTG
CGCCCGAAAAGTTGAAATGGGAACACCCGGCAGCTTATTCAATCCGTTTG
TTGATCGGGCATACACACATAGAGAACGGCGGCGGGGCGTCAACGGACCC
AGAAGAACCGCCATTGTGGCCAATTTTCGGGCTGCTGGATGCAAGTACAT
AGAGCAGTTCACAAGGGCACCTCTAGAATCGTTTCTGGTAGTCTGCTGCT
GCTGTCAAGTCATGCGACGCAACTCACACACCTTATCGGTAGGATCTGGC
AGTTTTGAGCAGTGTGGTCGCTTGTGGCGTGCTGTAACTGTCGGTAACGG
AAGCACACTTTGCTGCGCTGTTTCAATAAAAATTTCGGCGGGAAGATTGT
GCTCAAATCGTAAAACTGCCCGCACCTCGATCTCGCCCTACAAGACCTAA
ACTGATAAGCGGAACATTTTTGATCGACGGGGTTGCTCAAGGTGGTATGA
TTTCTTCAACAATACGTATGTAGATGTTTGTGTCTCCTGCGGCTAAGCGC
CCGAGGGGACAATTGAGATTTACAGCAGTCGGCCGGGGCACCGCCCGAGA
TTTTTAATCTAGCAGTTTGACCTGTAAGAAAAAAAAAATGGTTGGGGACA
AAACACCATTGCGGAGTCCCGGGGCACTGGGGACGACGAAGAGCCTGGCG
TAGCCATAGGCGTGACATGATCGATGACAGACGTAGGTCGGAGATGATTC
GGAGTGAGGGTCAAATACATGGGGACCTCGTTCTGCAGTTGCAAGTTGTG
CTGGAGTGGCCGCGCGGCCGAGGCACCGCGGTGTACAACATTTCAACAAA
GAGCATTCCGGCGCGGAATCTTCGATCCTTGTGGTAGGTATTGCCTCTTC
GGGACTGTCAGCTCGCAACTGTGTAAGTCTCGGCATGGTCTCTGCTGCGG
GTTGAATGAAGCCTACGATGGCCGCAGCTCTTCGTTGCTAGTGCAGCGCT
CAATCACCTGGCCCTTCGCTGTACCAAATATCGATCGACTCTTCGTTTCT
CTATATCACGTTCAGAACAATAACCCGCCAGCCGCAGCTGGATGTTTTTA
ACCTTCTTGGGTCGCCCCCCGTGTCTGGCCCACCACCTTGCCATCCTGTC
CTCCCTCTTTTCAGGTCCTGATGCTGGTGTTGGTGCTGTTGGGGTGGCTG
CACGCAAACGGACTTCCGCTCTGCCACTGCTGAGACCTCCCCACCGATAA
TTTACTGCCCCCGTTGCACCGTGGGAAGAGCGAGCTATCTGCCACAAGCT
GGTGTCTGCACGTTTTCATAACAAGCGGTGTGCTGTTTCCGTATGGCTTC
GTGTGTTGTTTGCAACATGTGTTTCTCAACACTACACCGGGACAGCTTTT
TAGTTCCCGTGGGCAATGTGTTTTTGTTTGGTGATTGTCAAGTGTTTTTG
GAGCCAGGGAAAAAAGCCTTCGTATTTACCGCTGCCGTAGCTTGCGCTCC
ATGCCAGGCCTGTCGCGCGGTCGATTGTAATGAATGCCAGTGGCCAAGAT
CGACGCGGCTGGATGTAGATGGTGCTGTCTTTTTCATGTTGAGATGCTTT
GGTCACTATCGGTGTGTTGCCTTAGGCTGACTGGATTATTTTCCTCTACA
CCGTACGTACTTGTATAGAAAAAGTCAGAATCTTTTGTTGATAATAGATG
TTGTACTCCACAGAGCTGAGGCGATAACATGTCTGTCTGGCAGAGAGCAT
GCGTTGGTTTGGGAACGCCTTGGACACAAGCATGCTTTGGTGACCGAGGG
CTTAGAAGTACTCGTGTTGGCTGCGGTGAACTCTCCCAAAACAGTCCATC
TCTACCGTTGCGACTAGAATCCAAGTTTAAGGCGCATTTGCTTTTTTTAA
TAACAGCACAATCTAATGAGAACGATCCCTTTTACCCATTGCTTGCGACC
GCGTCAAATTGTGCGGGCCGATCAAATCGCCCGCAGTACAGCCGTGTGCA
AGAGCCACACTGCGCGCATGCAATTCGGCTGAGACTTTGATTCACAAGCG
CGTGACATCAGTCAATATTTCGATAAAAAACCAAACCACGCCAAACACAA
CAAATTACACACACACTTCCGAGCCCTCTCGTGATAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig73:358355..362491+

>mRNA_E-siliculosus-1a_M_contig73.15480.1 ID=mRNA_E-siliculosus-1a_M_contig73.15480.1|Name=mRNA_E-siliculosus-1a_M_contig73.15480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:358355..362491+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGGACGTCATCAAGCCCGGGCCGCCTAACAATGGTGGGGGTGCTGA
CGGTGGGGGTGAGGAAGAGCAGGAGAATGGAGCTGTGACAATGGATTTGA
TGGGATCTGGACGCGACTTTCCTCTTCAGATGCCGGACGTCATCAAGCCC
GGGCCGCCTAACAATGGTGGGGGTGCTGACGGTGGGGGTGAGGAAGAGCA
GGAGAATGGAGCTGTGACAATGGATTTGATGGGATCTGGACGCGACTTTC
CTCTTCAGGTCCTGATGCTGGTGTTGGTGCTGTTGGGGTGGCTGCACGCA
AACGGACTTCCGCTCTGCCACTGCTGAGTCCTGATGCTGGTGTTGGTGCT
GTTGGGGTGGCTGCACGCAAACGGACTTCCGCTCTGCCACTGCTGA
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