mRNA_E-siliculosus-1a_M_contig73.15475.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig73.15475.1
Unique NamemRNA_E-siliculosus-1a_M_contig73.15475.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig73.15475.1 vs. uniprot
Match: A0A6H5KQJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ2_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 1.840e-78
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:    1 MGIAWFYAGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFLPENPEEESPFGSLDASELDEVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA 357
            MGIAW YAGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFLPENPEEESPFGSLDASEL+EVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA
Sbjct:    1 MGIAWLYAGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFLPENPEEESPFGSLDASELEEVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA 119
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig73.15475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQJ2_9PHAE1.840e-7898.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig73contigE-siliculosus-1a_M_contig73:322580..326597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size360
Model size360
Exons4
Ec32 orthologEc-03_003510.1
Ec32 ortholog descriptionmonocarboxylate permease, putative
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig73.15475.1prot_E-siliculosus-1a_M_contig73.15475.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig73 322580..326597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936007.7199132-CDS-E-siliculosus-1a_M_contig73:322579..3226221622936007.7199132-CDS-E-siliculosus-1a_M_contig73:322579..322622Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 322580..322622 -
1696250888.551836-CDS-E-siliculosus-1a_M_contig73:322579..3226221696250888.551836-CDS-E-siliculosus-1a_M_contig73:322579..322622Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 322580..322622 -
1622936007.7380302-CDS-E-siliculosus-1a_M_contig73:322860..3229881622936007.7380302-CDS-E-siliculosus-1a_M_contig73:322860..322988Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 322861..322988 -
1696250888.571112-CDS-E-siliculosus-1a_M_contig73:322860..3229881696250888.571112-CDS-E-siliculosus-1a_M_contig73:322860..322988Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 322861..322988 -
1622936007.762382-CDS-E-siliculosus-1a_M_contig73:325112..3251871622936007.762382-CDS-E-siliculosus-1a_M_contig73:325112..325187Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 325113..325187 -
1696250888.5847337-CDS-E-siliculosus-1a_M_contig73:325112..3251871696250888.5847337-CDS-E-siliculosus-1a_M_contig73:325112..325187Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 325113..325187 -
1622936007.7841642-CDS-E-siliculosus-1a_M_contig73:326483..3265971622936007.7841642-CDS-E-siliculosus-1a_M_contig73:326483..326597Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 326484..326597 -
1696250888.6042488-CDS-E-siliculosus-1a_M_contig73:326483..3265971696250888.6042488-CDS-E-siliculosus-1a_M_contig73:326483..326597Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig73 326484..326597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig73.15475.1

>prot_E-siliculosus-1a_M_contig73.15475.1 ID=prot_E-siliculosus-1a_M_contig73.15475.1|Name=mRNA_E-siliculosus-1a_M_contig73.15475.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=120bp
MGIAWFYAGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGI
LGLSGLEPALREQEFLPENPEEESPFGSLDASELDEVFEDSGVPRIEIDA
IKVALRYLKGEFTNVSVKA*
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mRNA from alignment at E-siliculosus-1a_M_contig73:322580..326597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig73.15475.1 ID=mRNA_E-siliculosus-1a_M_contig73.15475.1|Name=mRNA_E-siliculosus-1a_M_contig73.15475.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4018bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:322580..326597- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAATAGCTTGGTTTTACGCAGGCCATCCAGCGCTTGTGAAGAACGG
ATATGCTGAAAAATTCGAGGAGCTTTCGCGCCAATACCCACCGTCTTCCT
CGGATGTGTCCAAGGTGAGTACTTACGGTTCAGCGCCGGCGAGCGCACTT
CACGAAGCACGTGGCCACGATTGATGTACACCGCCCGCAGCTTTTTTTTT
TAAACGAAGCGCTCTGTCTGATGATCGCAGGGATCCAAGGTTTCCTGCTC
CCCAGTGAGCCCCGCCAATATCTCTGTACGTACATACACCAGTGCAGTTG
AAAAGTCATCTGTACAATGTGTTCGCAACACAGCTTTGAAGGCCAGCAGT
TGAAGCACCACCAGGACGAATACATGTTTATTGGCGGAATATATCTAATG
GCCTCTTGACGCAGCGTGTCGTTCAACAACAATCTGTGTTACCTATGTAC
ATACATTTCGGTGTCGGTATCTCCTGCTCTCACTCAACCACGGCCACCTC
GTGGGGAGGACCCAACACGCGTTTGGTTGTGCGTGATATCATTGACGCGA
CTGCAGAACGGGCCCGCAATTAGCAAAAAATTATGTTAAGAAAAAAAAGC
TCAAGTGTCTACGAAAAATAATACGAAAAGAGGGCGAAGAAATTCAGCTC
GATCTCGGCCACAACAAATGTAAGAAACGTCCTGACAAGCAACATGATCG
TGCGATACCCCGAGACACAAGAAACAACGGGTAGCTGGGGAAGCGTGTCC
AACAAGAAACGTCCCACTGCTGCTGCCACGCTCCCACCACTACCTAACTC
ATGTAATTTGGCAGGGAAGTAGTTACTTTCGCGGTGCCACCCGCGCCCCA
GCGCCGCTGCGGGATGCGCCACCCACCGCTGCTGTACTGCTGTACTGCCA
CAAATCGCGGGAGTCAGGAAGTTCAGGAGGGCGGCAACCCCAATCAATGA
TCGCCATACCGAACTGTCGATAGAGTGCTGCATGAAGGCTTGGTGTTTTC
TTCGCCAGAAAAAAGAATTACCAAAATAAGAGCAGCAGGAAGATGCGACA
GCCCAAAGGATCCGTTTCAGAAATTGACCGACTCTGGCTGGTCCTTCGGG
CGAAATATAAAATTGAGGCTCGACCCGATTTTGATGTTTCTTATCTCCGG
ACTCGTGCTGTATTGGAAAAATCCGCGGTCGGGAAGGGCCTACGAGTAGC
TCTGCTTCTTTTCGGATGGATACACAAGGTAGTTCGTGACGTTTGTTGTC
ATCGTCCATCGGTTGTAGGATAGATGATGACCTTGCTGGGTTCCCAACTG
AGTCACTGGGCCTACCGTTAGATAGACAAGCCTCTGGACTATTTCGTACC
GAAACGTCAAAGACATTGACCCCTTCTCCAACGCCCTTCAACTACGTGCA
TTGCCACCAGTGGACCGGATCGGAACTTATGAAGATGATCGGCATCTTGG
GTCTATCAGGATTGGAACCAGCATTGAGAGAACAGGTGCGTTCCTTTTGC
CTTGCGCCTCGAGCATTTCGCGGTCGCCCTATCATGGGCTTGGCGTGTTC
TCGTCATCTCCTGGACGGTCGGCATCATCCCTATTTTCTAGCGTATAAAA
GTTGCTGATGTTTCTCTAGGAAGGGGTGGTACCGGTCGCCGTGCTCCCTC
CTGGTCGGTACCCACGATAACAACCGTTGTTCCGTTCTCTCTAGCCAGTA
CCTTGTTCTGTCCGTACTAGTCTAACACGTGACGCGGTCGATTCCCGTGG
TCACAGGCTAACTTACCCAAAAAATTTACACGAAAATCAAATGGACCGCT
AGGGTCGGCAAGTCAATAGAAATCAACGGCAGATAGTCTAGGACCCTCCG
CTCGCCTCTACACGCTATGCGAGGTAACCATAGACTGGAAAAGAGAAATA
AAAAGACAAGATAAAAGAAAACGAAAAAGAAAAAGAAGAAGAAAGCAGAG
GGAGAAAAAAAGAAAGACACAGAGAAAGACACACGCCAGAACCACTACCC
TAGCGACAAACAAACAAAACAACACAAGAAACACAAGCGGGCCACCCGAG
AAAACAAAGGTACGTCATCGCTCGTGGGGGGTTGGTGCAATGGTGCAGTG
ACGGGGGGAAAGGGGGTGCTCATAGTCGTGCATGCCGTAGTCGTTTAGAC
CTTGACCTCGCATCCCTACAAAGCCGAGACGGAGCACTCCGGATTCTCAT
CGGACCAGGCTCTCATATCACCGAGCGTGAAGCGCCGTGAGGTATTCGGC
CAGTCGCATGAAGGGTGCGCTGCATCTTGGTGTTCGGCATCTTGTGCTTA
CTTCCTTGCATGCGGATGACAGCTGCGAATGAATTAATTTATTTTCTGGT
GTTTCGCTTCCAGAGACAGTTGTAAACACTGTGTAACTGCCTTGAGGGTG
CTTGACCCAATTTATCACAACGTGGTGCGATCATCCCCTTTGCGCCGAGT
GAGGGTTCTCGACCCCGCACAACATAATCTACTCGACCACCATTATGGTT
ACCGCAATAAAAGACAGTGATAGGGGGGGGGGATTACAGTCAATAAAGGG
GTTCAATCCGGCACAGCATTTCGCGCTACTCGGTCCGCCTCTTCTCGTTT
TCTGTCTTCCCTCACCGTCTAACCCGCCTACTGAACCCCTTCCGCCCCTG
GGTGTTGCCGTGTATCATGCGAGGGATATAGTCTGATTTTCCGTCTCGGA
AAAAAACCACATTGCTCACGCCCAAAGTTACTTCAATCTTCGTCTTGCTA
CTAATAAAGTAGCCACCTAATGATGCGTGATATCAACACAACCAATCTGC
AGCTTGCTTGCTTTGTGCCAAGGAAAGACAGACAGACGTGTCGGCTCTAT
ACGTATCCATGAAAGCTTCTCAACGCTCAAGGTCGGGAACTCGAATCACA
ACGAGATATGGCGGTTTCCCCAGTAACTTGTACCACGTGTGCAGATCATG
TGGTGGCCTATCTATCAACTGACTTCTTTCGCGTCGAAACTGAAGATACT
CTCCGCAGAGGAGTTTTCGTGGGTGCACGGGTCGACGCTCTTCAATTGAG
AGATACAGGACGCAATTATGATTAGGATAGCTAAGAAAGTAACGGTACCC
GCCACGATGGCATCTTCGGCCAAGGGTCCAAATATCATGACGCCATGAGC
CGCGTAAGAGAACAGGTGTCGTTCGCCGTTTGGTTTTATGCCAAGATACC
GTATTTTGCTTTGAGCTGGCCGAGCGTGCTCCAGATCAAGTTGGACGACA
GGCACAATGATTTAGCGGGGGCAGCTCAGACTCGATCACACGGCGCAATG
AATGCGGCTCCATGCCGCCTGACAATTGAACGGACTGTGGGCGTCGCACA
CGTCCACCCTCCCCAACCCCCCCGTACAACGCCCCCCCACCCTCAAACGC
TCGCCACCCCGCTCACTATTACCCACTCACGGCACTTCTTGAGAAATGAA
TGTGAGACTGGCGTTATACTATTCTGATATGTAGGACGGAGAAACAGGAT
GCGCTCCCGTTTTTCCTGTCCACATCAAACCCCATCCTATCCCCATCGAA
ACGCGATTGAAACGCGATTGTCACCACTTCGTCCGCCGGCTACCGTGCAA
ATAACCTAGGAATTTTTACCGGAAAACCCCGAAGAGGAAAGCCCGTTCGG
CAGCCTCGATGCCAGCGAACTGGACGAAGTCTTCGAAGATAGCGGTGTTC
CGCGCATTGAGATCGACGCTATCAAGGTAGCCCTCAGGTAAGGGACCATC
GTGAGGGGCCTGGGATTGCAGAGACCTTGTGTGGTGGTACGTGCAATTTT
TCTACACGTACAAACGACCAACGGCATACTTTCTGCGTGTGTTTATCTCT
AGCTTGTTGGCCTATTGTGGCAGTACCAGACTCATCGGCATCATGTTAAA
GCGGTGCGTTTTTTACTGGGGATTCGCTCATCACTTGAGAAAAAGTGATC
CGGCGTCGCCTTCTTCCGACTCCAGGTACCTCAAGGGTGAATTCACCAAC
GTGTCTGTGAAAGCTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig73:322580..326597-

>mRNA_E-siliculosus-1a_M_contig73.15475.1 ID=mRNA_E-siliculosus-1a_M_contig73.15475.1|Name=mRNA_E-siliculosus-1a_M_contig73.15475.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig73:322580..326597- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAATAGCTTGGTTTTACGCAGGCCATCCAGCGCTTGTGAAGAACGG
ATATGCTGAAAAATTCGAGGAGCTTTCGCGCCAATACCCACCGTCTTCCT
CGGATGTGTCCAAGATGGGAATAGCTTGGTTTTACGCAGGCCATCCAGCG
CTTGTGAAGAACGGATATGCTGAAAAATTCGAGGAGCTTTCGCGCCAATA
CCCACCGTCTTCCTCGGATGTGTCCAAGTGGACCGGATCGGAACTTATGA
AGATGATCGGCATCTTGGGTCTATCAGGATTGGAACCAGCATTGAGAGAA
CAGTGGACCGGATCGGAACTTATGAAGATGATCGGCATCTTGGGTCTATC
AGGATTGGAACCAGCATTGAGAGAACAGGAATTTTTACCGGAAAACCCCG
AAGAGGAAAGCCCGTTCGGCAGCCTCGATGCCAGCGAACTGGACGAAGTC
TTCGAAGATAGCGGTGTTCCGCGCATTGAGATCGACGCTATCAAGGTAGC
CCTCAGGAATTTTTACCGGAAAACCCCGAAGAGGAAAGCCCGTTCGGCAG
CCTCGATGCCAGCGAACTGGACGAAGTCTTCGAAGATAGCGGTGTTCCGC
GCATTGAGATCGACGCTATCAAGGTAGCCCTCAGGTACCTCAAGGGTGAA
TTCACCAACGTGTCTGTGAAAGCTTGAGTACCTCAAGGGTGAATTCACCA
ACGTGTCTGTGAAAGCTTGA
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