mRNA_E-siliculosus-1a_M_contig72.15430.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15430.1
Unique NamemRNA_E-siliculosus-1a_M_contig72.15430.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15430.1 vs. uniprot
Match: D8LRH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH5_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 3.530e-148
Identity = 251/266 (94.36%), Postives = 252/266 (94.74%), Query Frame = 1 
Query:  349 ERRLARKREDFEKMKELSAHMDNVVQRLATYFPLDGTEGEPKTDVAPPSAAPELPPLPLPPPDNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTASNSRHGEDEQRAERRGAGGRGQRGKSRRQS--RADSDRRGMDTDEPVGSRKHEAEGPDAAEHRKGTTSSWSRKDRSASVVDKGLGLKLESSGGGRRSRSPPGRAGANLGFEDSHERLLWDELRESLEGVAGSDAVLPAWGHGAAVEKARADRAHEEQ 1140
            ERRLARKREDFEKMKELS HMDNVVQRLATYFPLDGTEGEPKTDV PPSAAPELPPLPLP PDNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTAS  RHGEDEQ AERRGAGGRGQRG SRRQS  RADSDRRGMDTDEP GSRKHEAEGPDAAEHRKGTTSSWSRKDRSASVVDKGLGLKLESSGG  RSR PPGRAGANLGFEDSHERLLWDELRE+LEGVAGSDAV PAWGHGAAVEKARADRAHEEQ
Sbjct:   86 ERRLARKREDFEKMKELSTHMDNVVQRLATYFPLDGTEGEPKTDVVPPSAAPELPPLPLPSPDNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTASYGRHGEDEQHAERRGAGGRGQRGTSRRQSQSRADSDRRGMDTDEPAGSRKHEAEGPDAAEHRKGTTSSWSRKDRSASVVDKGLGLKLESSGGEMRSRPPPGRAGANLGFEDSHERLLWDELRETLEGVAGSDAVPPAWGHGAAVEKARADRAHEEQ 351
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15430.1 vs. uniprot
Match: A0A6H5KZ75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ75_9PHAE)

HSP 1 Score: 412 bits (1059), Expect = 2.880e-139
Identity = 265/306 (86.60%), Postives = 270/306 (88.24%), Query Frame = 1 
Query:  355 RLARKREDFEKMKELSAHMDNVVQRLATYFPLDGTEGEPKTDVAPPSAAPELPPLPLPPPDNARDRYVSARVLTMXXXXXXXXXXXXXXTSVASGLHFDDELSGSTASNSRHGEDEQRAERRGAGGRGQRGKSRRQSRADSDRRGMDTDEPVGSRKHEAEGPDAAEHRKGTTSSWSRKDRSASVVDKGLGLKLESSGGGRRSRSPPGRAGANLGFEDSH----------ERLLWDELRESLEGVAGSDAVLPAWGHGAAVEKARADRAHEEQXXXXXXXXXXXXXXXXXXXXXXXXXXXRIDNDDD 1242
            RLARKREDFEKMKELSAHMDNVVQRLATYFP D TEGEP TDV PPSAAPELPPLPLPPPDNAR RYVSARVLTM   XXXXXXXXXXX SVASGLHFDDELS STASNSRHGEDEQRA+RRG+GGRGQRG SRRQSRADS+RRGMDTDEPVGSRKHEAEGPD AEHRK TTS+WSRKD SASVV KGLGLKLESSGGGRRSRSPPGRAGANLGFEDSH          ERLLWDELRESLEGVAGSDAV PAWGHGAA EKARA+RA E  XXX      XXXXXXXXXXXXXXXXXXRIDNDDD
Sbjct:   88 RLARKREDFEKMKELSAHMDNVVQRLATYFPPDDTEGEPNTDVVPPSAAPELPPLPLPPPDNARGRYVSARVLTMDRAXXXXXXXXXXXXSVASGLHFDDELSASTASNSRHGEDEQRAKRRGSGGRGQRGTSRRQSRADSNRRGMDTDEPVGSRKHEAEGPDTAEHRKRTTSNWSRKDTSASVVGKGLGLKLESSGGGRRSRSPPGRAGANLGFEDSHXXXXXXXXXXERLLWDELRESLEGVAGSDAVPPAWGHGAAAEKARAERAREXXXXXLIDEAIXXXXXXXXXXXXXXXXXXRIDNDDD 393
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRH5_ECTSI3.530e-14894.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ75_9PHAE2.880e-13986.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:795062..797702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1245
Model size1245
Exons4
Ec32 orthologEc-18_004540.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15430.1prot_E-siliculosus-1a_M_contig72.15430.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig72 795062..797702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935995.57769-CDS-E-siliculosus-1a_M_contig72:795061..7951751622935995.57769-CDS-E-siliculosus-1a_M_contig72:795061..795175Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 795062..795175 +
1696250882.66133-CDS-E-siliculosus-1a_M_contig72:795061..7951751696250882.66133-CDS-E-siliculosus-1a_M_contig72:795061..795175Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 795062..795175 +
1622935995.5923774-CDS-E-siliculosus-1a_M_contig72:795575..7958091622935995.5923774-CDS-E-siliculosus-1a_M_contig72:795575..795809Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 795576..795809 +
1696250882.6708114-CDS-E-siliculosus-1a_M_contig72:795575..7958091696250882.6708114-CDS-E-siliculosus-1a_M_contig72:795575..795809Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 795576..795809 +
1622935995.6048455-CDS-E-siliculosus-1a_M_contig72:796287..7966031622935995.6048455-CDS-E-siliculosus-1a_M_contig72:796287..796603Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 796288..796603 +
1696250882.6828225-CDS-E-siliculosus-1a_M_contig72:796287..7966031696250882.6828225-CDS-E-siliculosus-1a_M_contig72:796287..796603Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 796288..796603 +
1622935995.6191964-CDS-E-siliculosus-1a_M_contig72:797121..7977021622935995.6191964-CDS-E-siliculosus-1a_M_contig72:797121..797702Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 797122..797702 +
1696250882.6931546-CDS-E-siliculosus-1a_M_contig72:797121..7977021696250882.6931546-CDS-E-siliculosus-1a_M_contig72:797121..797702Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 797122..797702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig72.15430.1

>prot_E-siliculosus-1a_M_contig72.15430.1 ID=prot_E-siliculosus-1a_M_contig72.15430.1|Name=mRNA_E-siliculosus-1a_M_contig72.15430.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=415bp
MPSAVSERCGERLCLLQHTRDLLGGLHARLSMSASSDESSGENSSNDGES
EAESGSSFSSSDDESGSGSSSSGSGSYSRSSSGEDDGNDSSSDASGSPGS
TEEEEEDEEGAQDDEKERRLARKREDFEKMKELSAHMDNVVQRLATYFPL
DGTEGEPKTDVAPPSAAPELPPLPLPPPDNARDRYVSARVLTMDRAVSAR
RLMTDRATSVASGLHFDDELSGSTASNSRHGEDEQRAERRGAGGRGQRGK
SRRQSRADSDRRGMDTDEPVGSRKHEAEGPDAAEHRKGTTSSWSRKDRSA
SVVDKGLGLKLESSGGGRRSRSPPGRAGANLGFEDSHERLLWDELRESLE
GVAGSDAVLPAWGHGAAVEKARADRAHEEQRRRLIDEAIAVLLEGSSSSS
DSSSEDERIDNDDD*
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mRNA from alignment at E-siliculosus-1a_M_contig72:795062..797702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig72.15430.1 ID=mRNA_E-siliculosus-1a_M_contig72.15430.1|Name=mRNA_E-siliculosus-1a_M_contig72.15430.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2641bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:795062..797702+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGTCTGCCGTGAGTGAGCGTTGCGGGGAACGGTTGTGTCTATTGCA
GCACACCCGAGATTTGTTGGGTGGACTTCACGCCAGACTGAGCATGTCGG
CATCAAGCGATGAGGTACGGAATCGTGGTGCGTAAGATTACCAAAACAGG
ATATTGGGGCCTATGCCAGCCTAGGCGGCAAGATACCGCCGGCTTGGCCG
GCCACCTACTGCAACATTGATCGCCGGATCGAGGGAGAGAGAGAAAGAAC
CCAACAGTATTCCAGCTACATCATACTCAAGAATATCTCAGACTAGTCTC
TATGATCTTTGGCTTCTCTCATTACAAGCTGAGAGCTGGCGGAAACGAGT
GCAAACGCGCAAACGCTGCCGTCAATATTCAATGTTGTGTAATACCTTGG
AGTATGTAACAGCAGTGGGACCCGCGCTGACTATGTAGGAGTTTATTGGT
TATCGTGCTTCTCAACAATCATCACCAACTTTGCAACGTATTTCGCCTTG
CTGAACACTTTCAGAGCTCGGGAGAGAACAGCAGCAACGACGGAGAGAGC
GAGGCGGAATCTGGTTCGAGCTTTAGCTCATCAGACGATGAGAGCGGCTC
CGGTAGCTCGTCTAGCGGCAGCGGCAGTTATAGCCGGAGCAGTTCTGGGG
AGGACGATGGCAACGACAGTAGCAGTGACGCTAGCGGTAGCCCGGGAAGC
ACCGAGGAGGAAGAGGAGGACGAAGAAGGAGCTCAAGACGATGAGAAGGT
CGGCGCATGTGGAGCTTTTACAGCGTCGATGTCAATGTACTTGTAAATTT
AGTGCTTCGACGTCTACGCATGGCATGCATAGGCTGACCATACAGGGGGC
GGGCAAACCAGAAACGCCGTCGCTGTGACTGTTTCCTTCTTTCTCTTGTT
TCACGGGAGCGTACCCTGCGGTCGTACTGCAGGTGGCGCAACGAAAGTTC
TAAGACCGCTATGCTTGTACCGAAAAATCGGCCTCTCGGTGTGTCCGAGC
CGTGGCGGCAGCAGCTGTCCCGGGCCTTGTGCGGCAAGGGCTGCCCACCA
GCGTCTGGTTGATGGTAGACATGGCCGCAATCTGCTATCCGGGAGATACT
TGGACCTATCGTTGTCCTTGCGTCAAACCAAACTTGGCCGCGAGCGTCAA
TCATGTTGGTGGGGCCCTCCCATCGCCTGTTGCACCGCTGCTACGCTTGA
TTGCGTAACTGCTGTCGAACCTTCAGGAGAGGCGGCTGGCCAGGAAGCGA
GAAGACTTCGAGAAGATGAAGGAACTCTCTGCCCATATGGACAACGTCGT
GCAACGCCTGGCCACCTACTTTCCCCTAGACGGCACAGAAGGAGAACCGA
AAACCGACGTCGCTCCCCCCTCTGCTGCGCCCGAGTTGCCCCCACTACCA
CTGCCGCCACCTGATAACGCAAGGGATCGGTACGTTTCTGCGAGAGTCTT
GACGATGGACCGGGCTGTGTCGGCAAGGCGACTGATGACCGACCGGGCTA
CTTCTGTTGCCAGCGGCCTGCACTTCGACGACGAGCTCTCAGGTGCCACT
GCTGAATAGGTTGGACTCCGGCGTGCATTTGATCCTAAGGATATCTACAT
AGCAGATTCTTGTGAAGAAAAACTGTAGCAGCCTGAGCTCCTGTGTTTTG
TTCTTACCCGGCCTTTCCCACCATGCTGAATGCCCTACGCTCTGAAACGA
CAAAAGGTGACCGCTACCTCTCATGATTGGCGACACAGTGAAAAATAGCT
CCCCACGCAACGTCTGTGCTCTGCCGTCTCAGCGTGCCTGTTTGCTTACG
GTGTGGTATACGATGTTTCTCTACCCGAAGTTGCGTATATAGCAATCCCT
GAAGACCCTGATGAAGACTCGCTTGTATGTTGGCCTGACTTGTTCGATGA
CAATCTTTCCCAAACGGTATATCTTGAGGGTTCTATGAAAAGAAGGAATC
GCCCTCAACAGACGTTTGGGAGATATTCGACTTCCTATAGTCCATCTGTC
ACCCACTTTCCTCCGACGCTACAACTTCCCATGTTCACATCTTCCTTCGG
TTGACCCCAGGCTCGACAGCATCAAACAGCAGGCATGGGGAGGACGAACA
GCGTGCGGAGCGTCGGGGCGCGGGGGGGCGTGGGCAACGGGGTAAGAGCA
GGAGACAGAGCCGTGCAGACTCGGATAGGCGGGGGATGGATACGGACGAG
CCTGTGGGGAGTCGAAAACACGAAGCAGAAGGACCGGACGCCGCAGAACA
CCGGAAAGGGACAACAAGCTCCTGGTCTAGGAAGGATAGAAGTGCCAGCG
TCGTCGATAAGGGGCTAGGGCTCAAACTAGAGTCGAGCGGAGGGGGGAGG
AGGTCCCGGTCTCCTCCAGGCAGAGCAGGTGCAAACTTGGGCTTTGAAGA
TTCGCACGAGCGCCTTCTGTGGGATGAACTCCGCGAGTCCTTGGAAGGGG
TCGCTGGAAGCGATGCTGTGCTGCCGGCGTGGGGACATGGTGCTGCGGTT
GAGAAAGCACGAGCGGACAGGGCTCACGAGGAGCAGCGGCGGCGGCTCAT
AGATGAAGCTATAGCTGTTTTGCTAGAGGGTAGTAGTAGCAGCAGCGACA
GCAGCAGCGAGGACGAGAGAATAGATAACGACGACGATTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig72:795062..797702+

>mRNA_E-siliculosus-1a_M_contig72.15430.1 ID=mRNA_E-siliculosus-1a_M_contig72.15430.1|Name=mRNA_E-siliculosus-1a_M_contig72.15430.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2490bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:795062..797702+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGTCTGCCGTGAGTGAGCGTTGCGGGGAACGGTTGTGTCTATTGCA
GCACACCCGAGATTTGTTGGGTGGACTTCACGCCAGACTGAGCATGTCGG
CATCAAGCGATGAGATGCCGTCTGCCGTGAGTGAGCGTTGCGGGGAACGG
TTGTGTCTATTGCAGCACACCCGAGATTTGTTGGGTGGACTTCACGCCAG
ACTGAGCATGTCGGCATCAAGCGATGAGAGCTCGGGAGAGAACAGCAGCA
ACGACGGAGAGAGCGAGGCGGAATCTGGTTCGAGCTTTAGCTCATCAGAC
GATGAGAGCGGCTCCGGTAGCTCGTCTAGCGGCAGCGGCAGTTATAGCCG
GAGCAGTTCTGGGGAGGACGATGGCAACGACAGTAGCAGTGACGCTAGCG
GTAGCCCGGGAAGCACCGAGGAGGAAGAGGAGGACGAAGAAGGAGCTCAA
GACGATGAGAAGAGCTCGGGAGAGAACAGCAGCAACGACGGAGAGAGCGA
GGCGGAATCTGGTTCGAGCTTTAGCTCATCAGACGATGAGAGCGGCTCCG
GTAGCTCGTCTAGCGGCAGCGGCAGTTATAGCCGGAGCAGTTCTGGGGAG
GACGATGGCAACGACAGTAGCAGTGACGCTAGCGGTAGCCCGGGAAGCAC
CGAGGAGGAAGAGGAGGACGAAGAAGGAGCTCAAGACGATGAGAAGGAGA
GGCGGCTGGCCAGGAAGCGAGAAGACTTCGAGAAGATGAAGGAACTCTCT
GCCCATATGGACAACGTCGTGCAACGCCTGGCCACCTACTTTCCCCTAGA
CGGCACAGAAGGAGAACCGAAAACCGACGTCGCTCCCCCCTCTGCTGCGC
CCGAGTTGCCCCCACTACCACTGCCGCCACCTGATAACGCAAGGGATCGG
TACGTTTCTGCGAGAGTCTTGACGATGGACCGGGCTGTGTCGGCAAGGCG
ACTGATGACCGACCGGGCTACTTCTGTTGCCAGCGGCCTGCACTTCGACG
ACGAGCTCTCAGGAGAGGCGGCTGGCCAGGAAGCGAGAAGACTTCGAGAA
GATGAAGGAACTCTCTGCCCATATGGACAACGTCGTGCAACGCCTGGCCA
CCTACTTTCCCCTAGACGGCACAGAAGGAGAACCGAAAACCGACGTCGCT
CCCCCCTCTGCTGCGCCCGAGTTGCCCCCACTACCACTGCCGCCACCTGA
TAACGCAAGGGATCGGTACGTTTCTGCGAGAGTCTTGACGATGGACCGGG
CTGTGTCGGCAAGGCGACTGATGACCGACCGGGCTACTTCTGTTGCCAGC
GGCCTGCACTTCGACGACGAGCTCTCAGGCTCGACAGCATCAAACAGCAG
GCATGGGGAGGACGAACAGCGTGCGGAGCGTCGGGGCGCGGGGGGGCGTG
GGCAACGGGGTAAGAGCAGGAGACAGAGCCGTGCAGACTCGGATAGGCGG
GGGATGGATACGGACGAGCCTGTGGGGAGTCGAAAACACGAAGCAGAAGG
ACCGGACGCCGCAGAACACCGGAAAGGGACAACAAGCTCCTGGTCTAGGA
AGGATAGAAGTGCCAGCGTCGTCGATAAGGGGCTAGGGCTCAAACTAGAG
TCGAGCGGAGGGGGGAGGAGGTCCCGGTCTCCTCCAGGCAGAGCAGGTGC
AAACTTGGGCTTTGAAGATTCGCACGAGCGCCTTCTGTGGGATGAACTCC
GCGAGTCCTTGGAAGGGGTCGCTGGAAGCGATGCTGTGCTGCCGGCGTGG
GGACATGGTGCTGCGGTTGAGAAAGCACGAGCGGACAGGGCTCACGAGGA
GCAGCGGCGGCGGCTCATAGATGAAGCTATAGCTGTTTTGCTAGAGGGTA
GTAGTAGCAGCAGCGACAGCAGCAGCGAGGACGAGAGAATAGATAACGAC
GACGATTGAGCTCGACAGCATCAAACAGCAGGCATGGGGAGGACGAACAG
CGTGCGGAGCGTCGGGGCGCGGGGGGGCGTGGGCAACGGGGTAAGAGCAG
GAGACAGAGCCGTGCAGACTCGGATAGGCGGGGGATGGATACGGACGAGC
CTGTGGGGAGTCGAAAACACGAAGCAGAAGGACCGGACGCCGCAGAACAC
CGGAAAGGGACAACAAGCTCCTGGTCTAGGAAGGATAGAAGTGCCAGCGT
CGTCGATAAGGGGCTAGGGCTCAAACTAGAGTCGAGCGGAGGGGGGAGGA
GGTCCCGGTCTCCTCCAGGCAGAGCAGGTGCAAACTTGGGCTTTGAAGAT
TCGCACGAGCGCCTTCTGTGGGATGAACTCCGCGAGTCCTTGGAAGGGGT
CGCTGGAAGCGATGCTGTGCTGCCGGCGTGGGGACATGGTGCTGCGGTTG
AGAAAGCACGAGCGGACAGGGCTCACGAGGAGCAGCGGCGGCGGCTCATA
GATGAAGCTATAGCTGTTTTGCTAGAGGGTAGTAGTAGCAGCAGCGACAG
CAGCAGCGAGGACGAGAGAATAGATAACGACGACGATTGA
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