mRNA_E-siliculosus-1a_M_contig72.15410.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15410.1
Unique NamemRNA_E-siliculosus-1a_M_contig72.15410.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: D8LRG1_ECTSI (HNH endonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG1_ECTSI)

HSP 1 Score: 648 bits (1672), Expect = 1.500e-227
Identity = 325/336 (96.73%), Postives = 327/336 (97.32%), Query Frame = 3 
Query:   78 MAHRKRARNNGSRAKTWFLGACVMNAAAQGASAFAFSSYSASSFSLRGQADPASRGIVLAKQAVAPAGRAENLLSMKIKNAGKKPVRSRRSGPPANVEGYSHAAFVKMKNEVALQVATNKKGSRRTRTVNFNGGIDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEILEEEDGGDADETP 1085
            MAHRKRARNNG+RAKTWFLGACVMNAAAQGASAFAFSSYSASSFSLRGQADPASRG VLAKQAVAPAGRAENLLSMKIK AGKKPVRSRRSGPPANVEGYSHAAFVKMKNEVALQVATNKKGSRRTRTVNFNGGIDSCPCLVLNADYQPLSYLPL     LWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHR+HPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETW DYLYFESEILEEEDGGD DETP
Sbjct:    1 MAHRKRARNNGARAKTWFLGACVMNAAAQGASAFAFSSYSASSFSLRGQADPASRGTVLAKQAVAPAGRAENLLSMKIKKAGKKPVRSRRSGPPANVEGYSHAAFVKMKNEVALQVATNKKGSRRTRTVNFNGGIDSCPCLVLNADYQPLSYLPLS----LWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRTHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWGDYLYFESEILEEEDGGDVDETP 332
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A836CK35_9STRA (HNH endonuclease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK35_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.820e-71
Identity = 118/189 (62.43%), Postives = 142/189 (75.13%), Query Frame = 3 
Query:  480 IDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEI 1046
            ++SCP LVLNADYQPLSYLPL     LW WQ+ IKAV+ ++VVVLAT+ DR VRS +V ++LPSVIALK +VN H   P FTRRNL+LRD +QC YC K F   +LSFDHV P+KLGG  +W NVVT+C RCNN K DCHP+ L  IGM L K P  PTF +LQ +ARRYPP  IH+TW +YLY++S I
Sbjct:   78 LESCPALVLNADYQPLSYLPLS----LWPWQEAIKAVWMDRVVVLATH-DRYVRSANVELKLPSVIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 261
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A7S2S5X4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5X4_9STRA)

HSP 1 Score: 221 bits (562), Expect = 5.730e-61
Identity = 104/194 (53.61%), Postives = 140/194 (72.16%), Query Frame = 3 
Query:  456 RTVNFNGGIDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFE 1037
            ++VN+   ++ CP LVLNAD+QPLSY+PL     +W WQD IKAVF+E+VVV+A Y +  VRS SV VQ+PSVIALK++V   R+ P FTRRN+FLRDS+ CQYC       +L+FDHV+P+  GG  +W+NVVTAC RCNN+K D  P+ L  +G+SL + P  P+  +LQA AR++PP  +H TW DYL ++
Sbjct:  201 KSVNYFNNLEQCPVLVLNADFQPLSYIPLS----IWSWQDAIKAVFAERVVVVANY-EHEVRSASVAVQVPSVIALKQYVPQARATPTFTRRNVFLRDSYCCQYCGTCAQTQHLTFDHVLPRSKGGDTSWNNVVTACHRCNNKKKDMMPQQLHHLGLSLLREPRVPSHYELQAAARKFPPKVMHHTWRDYLAWD 389
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A2E4F2L9_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4F2L9_9PROT)

HSP 1 Score: 204 bits (518), Expect = 1.440e-57
Identity = 99/189 (52.38%), Postives = 132/189 (69.84%), Query Frame = 3 
Query:  480 IDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEI 1046
            +D+CP LVLNADY+PLSY PL     LW WQ+ +KAVF ++V ++A Y ++ VRSPS  ++LPSVI+LK +V ++R  P FTR N+FLRD   CQYC+KYF  H+L+FDHV+PK  GG   W NV+TAC  CN RK +   R +  +GM L   P  PT  +LQ   RRYPP  +HE+W D+LY++SE+
Sbjct:    3 VDTCPALVLNADYRPLSYFPLS----LWSWQETVKAVFLDRVHIVAEY-EQEVRSPSWQMRLPSVISLKRYVQSNR-RPAFTRFNVFLRDGFTCQYCRKYFDTHDLTFDHVLPKSRGGFTNWTNVITACASCNLRKGN---RLMAEVGMHLVYMPRVPTVYELQNVGRRYPPNYLHESWSDFLYWDSEL 182
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A7R9UEZ0_9STRA (Hypothetical protein n=4 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEZ0_9STRA)

HSP 1 Score: 209 bits (531), Expect = 3.740e-57
Identity = 110/231 (47.62%), Postives = 142/231 (61.47%), Query Frame = 3 
Query:  384 AAFVKMKNEVALQVATNKKGSRRTRTVNFNGGIDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEILEEEDGGDAD 1076
            AA  +M  E+  +V   KK SR   +      +D+CP LVLNADYQPLSY+PL     LW WQ+ IKAV   KV V+  Y D  + +    + LPSVIALKE+V      P FTRRNL+LRD+++C YC +YF    LS+DHV+P+  GG  +WDNVVT+C  CN RK + HP  L  IGM L   P  PT  QLQ +AR+YPP   H+TWE +L + +E  + + G D D
Sbjct:  130 AAHSEMAKEIEAEV--EKKSSRHFYS------LDTCPALVLNADYQPLSYMPLS----LWSWQETIKAVLLGKVSVVERYPDVKIHTIDQEIPLPSVIALKEYVKPDHKVPAFTRRNLYLRDNYRCAYCARYFYSQQLSYDHVLPRFYGGSTSWDNVVTSCTDCNGRKGNLHPSKLHEIGMRLLVQPKRPTSYQLQQQARKYPPRLKHKTWEMWLSYSAENSDAQHGIDLD 348
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A6M8VNA4_9PROT (HNH endonuclease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8VNA4_9PROT)

HSP 1 Score: 202 bits (515), Expect = 3.990e-57
Identity = 100/189 (52.91%), Postives = 130/189 (68.78%), Query Frame = 3 
Query:  480 IDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEI 1046
            +D+CP LVLNAD++PLSY PL     LW WQ+ +KAVF ++V +L+ Y DRSV SPS  ++LPSVIALKE+V  H   P FTR N+FLRD  QCQYC + F  H L+FDHV+P+  GG  TW+N+V AC  CN RKSD  PR+     M   + P TP+  +LQ   R +PP  +HE+W DYLY++SE+
Sbjct:    5 LDNCPTLVLNADFRPLSYFPLS----LWSWQEAVKAVFMDRVHILSEY-DRSVHSPSFEMRLPSVIALKEYVMPHHK-PAFTRFNVFLRDMWQCQYCGETFKTHELTFDHVIPRSRGGDTTWENIVAACNDCNVRKSDKLPRECH---MHPLRNPTTPSIYELQENGRAFPPNFLHESWGDYLYWDSEL 184
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A7S3AAW0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAW0_9RHOD)

HSP 1 Score: 203 bits (516), Expect = 3.660e-56
Identity = 97/191 (50.79%), Postives = 133/191 (69.63%), Query Frame = 3 
Query:  465 NFNGGIDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFE 1037
            N    +D CP LVLN++YQPLSY+PL     LW WQ+V+KAV+ ++VV+LATY D  VRSPSV ++LPSVIALK + +     P FTR N+F+RD+  CQYC++     +L+FDHV+P+  GG   W+NVVTAC  CN +K    P+ +K   + L K PV P+++QLQ+ AR+Y P  IH TWEDY+Y++
Sbjct:   82 NTGSRLDQCPALVLNSNYQPLSYVPLS----LWPWQEVVKAVYLDRVVILATY-DIQVRSPSVSLELPSVIALKRYQSLGGKRPAFTRYNVFIRDNFTCQYCRQKLPDRDLTFDHVIPRSRGGTSGWENVVTACVDCNYKKG---PKLIKETDLKLRKVPVEPSYAQLQSMARKYRPKHIHPTWEDYVYWD 264
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: UPI00167299FA (HNH endonuclease n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI00167299FA)

HSP 1 Score: 200 bits (509), Expect = 4.450e-56
Identity = 103/197 (52.28%), Postives = 133/197 (67.51%), Query Frame = 3 
Query:  477 GIDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEILEEEDGG 1067
            G D+ P LVLNAD++PLSY PL     LW WQD +KAVF ++V +++ Y D  VRSPS  ++LPSVIALKE+V+  R  P FTR N+FLRD   CQYC   F  H L+FDHVVP+  GG+ +W+NVVTACG CN RK +  PR   +IGM     P  PT   LQ   R +PP  +HE+W DYLY++ E+ +++DGG
Sbjct:    3 GPDNAPALVLNADFRPLSYFPLS----LWSWQDAVKAVFLDRVNIVSHY-DTVVRSPSFEMKLPSVIALKEYVHQSRK-PAFTRFNVFLRDRFACQYCGDRFPTHELTFDHVVPRSRGGRTSWENVVTACGACNLRKGNHMPR---AIGMVPQVTPRQPTAYDLQDAGRGFPPNYLHESWRDYLYWDIELEQDDDGG 190
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A6I7P8K3_9PROT (HNH endonuclease n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7P8K3_9PROT)

HSP 1 Score: 199 bits (507), Expect = 6.840e-56
Identity = 98/189 (51.85%), Postives = 130/189 (68.78%), Query Frame = 3 
Query:  480 IDSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEI 1046
            +D+CP LVLNADYQPLSY PL     LWGWQD +KA+F ++V V++ Y DR +RSPS  ++LPSV+ALKE+V     +PPFTR NLFLRD   CQYC   F   +L+FDHVVP+  GG+ +WDN+VTAC RCN +K +  P +    GM     P  PT  +LQ   R +PP  +HE+W D+LY+++E+
Sbjct:   12 LDACPALVLNADYQPLSYFPLS----LWGWQDAVKAMFLDRVAVVSYY-DREIRSPSFRLRLPSVVALKEYVQQSH-YPPFTRFNLFLRDRFGCQYCGTRFRAEDLTFDHVVPRSRGGQTSWDNIVTACTRCNLQKGNKLPAE---CGMPPRTKPRRPTNYELQRAGRAFPPNYLHESWRDFLYWDTEL 191
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Match: A0A350YJX7_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A350YJX7_9PROT)

HSP 1 Score: 199 bits (505), Expect = 1.080e-55
Identity = 100/188 (53.19%), Postives = 127/188 (67.55%), Query Frame = 3 
Query:  483 DSCPCLVLNADYQPLSYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVIALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWEDYLYFESEI 1046
            +SCP LVLNAD++PLSY PL     LW WQD +KAVF ++V +L+ Y DR VRSPS  + LPSVIALKE+V+  R HP FTR N+FLRDS +CQYC      H L+FDHV+PK  GG  +W NVVTACG CN  K       L   GM+L + P  PT  +LQ   R +PP  +HE+W D+LY+++E+
Sbjct:    6 ESCPALVLNADFRPLSYFPLS----LWSWQDTVKAVFLDRVTILSEY-DRVVRSPSFEMFLPSVIALKEYVSPSR-HPAFTRFNVFLRDSFRCQYCFTPHITHELTFDHVIPKSKGGTTSWTNVVTACGECNLHKGS---HLLHECGMNLRRKPWRPTSHELQESGRAFPPNYLHESWRDFLYWDTEL 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG1_ECTSI1.500e-22796.73HNH endonuclease family protein n=1 Tax=Ectocarpus... [more]
A0A836CK35_9STRA1.820e-7162.43HNH endonuclease family protein n=1 Tax=Tribonema ... [more]
A0A7S2S5X4_9STRA5.730e-6153.61Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2E4F2L9_9PROT1.440e-5752.38HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A7R9UEZ0_9STRA3.740e-5747.62Hypothetical protein n=4 Tax=Pinguiococcus pyrenoi... [more]
A0A6M8VNA4_9PROT3.990e-5752.91HNH endonuclease n=1 Tax=Proteobacteria bacterium ... [more]
A0A7S3AAW0_9RHOD3.660e-5650.79Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
UPI00167299FA4.450e-5652.28HNH endonuclease n=1 Tax=Thalassobaculum fulvum Ta... [more]
A0A6I7P8K3_9PROT6.840e-5651.85HNH endonuclease n=1 Tax=Geminicoccaceae bacterium... [more]
A0A350YJX7_9PROT1.080e-5553.19HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:666876..672420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1011
Model size2351
Exons5
Ec32 orthologEc-18_004400.1
Ec32 ortholog descriptionHNH endonuclease family protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.V
EggNOG OGs2QQI3@2759,COG1403@1
EggNOG free text desc.HNH endonuclease
Seed eggNOG ortholog2880.D8LRG1
Seed ortholog evalue9e-184
Seed ortholog score649.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935992.248724-UTR-E-siliculosus-1a_M_contig72:666875..6669521622935992.248724-UTR-E-siliculosus-1a_M_contig72:666875..666952Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 666876..666952 +
1696250881.2896516-UTR-E-siliculosus-1a_M_contig72:666875..6669521696250881.2896516-UTR-E-siliculosus-1a_M_contig72:666875..666952Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 666876..666952 +
1622935992.3707101-UTR-E-siliculosus-1a_M_contig72:671157..6724201622935992.3707101-UTR-E-siliculosus-1a_M_contig72:671157..672420Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 671158..672420 +
1696250881.3654149-UTR-E-siliculosus-1a_M_contig72:671157..6724201696250881.3654149-UTR-E-siliculosus-1a_M_contig72:671157..672420Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 671158..672420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935992.2711823-CDS-E-siliculosus-1a_M_contig72:666952..6672681622935992.2711823-CDS-E-siliculosus-1a_M_contig72:666952..667268Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 666953..667268 +
1696250881.3134704-CDS-E-siliculosus-1a_M_contig72:666952..6672681696250881.3134704-CDS-E-siliculosus-1a_M_contig72:666952..667268Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 666953..667268 +
1622935992.2859964-CDS-E-siliculosus-1a_M_contig72:668928..6690911622935992.2859964-CDS-E-siliculosus-1a_M_contig72:668928..669091Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 668929..669091 +
1696250881.3230963-CDS-E-siliculosus-1a_M_contig72:668928..6690911696250881.3230963-CDS-E-siliculosus-1a_M_contig72:668928..669091Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 668929..669091 +
1622935992.3038816-CDS-E-siliculosus-1a_M_contig72:669665..6697951622935992.3038816-CDS-E-siliculosus-1a_M_contig72:669665..669795Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 669666..669795 +
1696250881.331591-CDS-E-siliculosus-1a_M_contig72:669665..6697951696250881.331591-CDS-E-siliculosus-1a_M_contig72:669665..669795Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 669666..669795 +
1622935992.3340557-CDS-E-siliculosus-1a_M_contig72:670312..6704971622935992.3340557-CDS-E-siliculosus-1a_M_contig72:670312..670497Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 670313..670497 +
1696250881.3403342-CDS-E-siliculosus-1a_M_contig72:670312..6704971696250881.3403342-CDS-E-siliculosus-1a_M_contig72:670312..670497Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 670313..670497 +
1622935992.3528757-CDS-E-siliculosus-1a_M_contig72:670940..6711571622935992.3528757-CDS-E-siliculosus-1a_M_contig72:670940..671157Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 670941..671157 +
1696250881.3566792-CDS-E-siliculosus-1a_M_contig72:670940..6711571696250881.3566792-CDS-E-siliculosus-1a_M_contig72:670940..671157Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 670941..671157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15410.1prot_E-siliculosus-1a_M_contig72.15410.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig72 666953..671157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig72.15410.1

>prot_E-siliculosus-1a_M_contig72.15410.1 ID=prot_E-siliculosus-1a_M_contig72.15410.1|Name=mRNA_E-siliculosus-1a_M_contig72.15410.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=337bp
MAHRKRARNNGSRAKTWFLGACVMNAAAQGASAFAFSSYSASSFSLRGQA
DPASRGIVLAKQAVAPAGRAENLLSMKIKNAGKKPVRSRRSGPPANVEGY
SHAAFVKMKNEVALQVATNKKGSRRTRTVNFNGGIDSCPCLVLNADYQPL
SYLPLRHVFVLWGWQDVIKAVFSEKVVVLATYGDRSVRSPSVVVQLPSVI
ALKEFVNNHRSHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKL
GGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAK
ARRYPPLEIHETWEDYLYFESEILEEEDGGDADETP*
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mRNA from alignment at E-siliculosus-1a_M_contig72:666876..672420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig72.15410.1 ID=mRNA_E-siliculosus-1a_M_contig72.15410.1|Name=mRNA_E-siliculosus-1a_M_contig72.15410.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5545bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:666876..672420+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATCACAAGAACAGCAGTTCAATTTGGGCGATACCACGATACCACACCTG
CGCCCTGTCTCTCACGCCTGGGTCTAGATGGCGCACCGAAAGAGAGCGAG
GAACAATGGATCGAGGGCCAAGACGTGGTTCCTTGGAGCTTGTGTCATGA
ACGCCGCAGCGCAAGGCGCTTCGGCGTTCGCCTTTTCCTCATATTCTGCT
TCGTCTTTTTCTCTCCGCGGGCAAGCCGATCCCGCCTCCAGAGGTATCGT
GCTGGCAAAGCAGGCTGTAGCGCCGGCTGGGCGGGCGGAGAACCTGCTGT
CGATGAAAATAAAGAACGCGGGGAAGAAGCCCGTTCGGTCAAGACGGAGC
GGGCCTCCTGCTAACGTGGAGGGCTACTCCCACGCTGCTTTCGGTCAGTG
TGTATAGGGTTGCTTCGCTCTCGCCAAGGTCGAAGAAGATTTGATTTTAG
AAACGTCGGCAGAATGTCTACATACGTCGGGCATGTCGGCCGTGAGAACT
ATCGTAGCTGGCTGTGTCTGTGTCTGTGTTGTAGTACTGCCTGTTGTGAT
GCTGGTGCTGGCCCTGGTGTTAATGACGGCAGCGGATGATCATCCCATTG
TTGTAGTTGAAGAGAAATGCCGTGCTTCCCCCCAAGGGGGCCTCAGGGGT
TGAGGTCTGGATTCGATTTTTCAAACTTGGCAACGTTGCACACACTTGGC
TCCCTTTCGGCATCTGGATCCGTAGCCTATGTGTACCTACCAACGCCAAA
CACTACAGCAGCAGCAGTCCTGACCAACTCTTAAGAAACCCGTACTTTGA
ACAAGGCTCAAAGGTCTAACTTGCTGTGTCTCCACGATTGAGCACAGGCC
TACTTAAAGTATGTAGGCTACCATCCAGTGCCGGCGGCTTGCTCTTCCTA
CATGAAGATTTACCTACACATTCTCCGTTGTTCCTTTTCAGGTCTCTTGC
TTGAAGGTGTTGGGAAGCCTGCGCATCCTGCGTTGCCCCGTAAGAACCAA
TATACTGCTTTGTGGTGCTGTGTCGCAAGAGCTTAGTCTTTCTGTGAGGC
TATGTATATTTTCTAAGAAAGGAGCGTGGACGCACAGTCTACTAGGCAAC
AGCAGCAGTGTTGGGCGTGCCAAAGCCTAATACTGCTGTACCAACAGCAT
TATTAATAGTGCTGGGCGTGCCATCGTTTTTACCGCTACCCCACCTCTCG
CTGCTGGGCCGGTTACAAGGACGTGCACAGAACAGCAGTACACGGGTATT
CGAACATTCAAACTTGGTAGGCATAGGGAAATATGTTGTCCGATTGTGCT
GCAATTGTGATACTCCTACATTGAGGACCGAAAAAGGTACTGGTACCTGC
AGCTGTCCTTGCCGCCGCCACATCCGTGATGGTGCCCTGGTTACGCTTCT
GCTACGTGACAAGACATCTTTGGCAGCCTGTTGGGGGCGTGATATGCACC
CCGACGGTACAGTTAGCAAGCCTGTCTGCAATTGATGAAACACATCAATG
ATGAAAAAACCACCTGGCCGTGTTGACTTGACCTGCCTCCCGTCTGCCTT
CATGCACGATTCAACGTGACGATTAGGCTGGATTATCAGTACTTGTCTGA
CCTCCGTTTCTATGAGAGGCAGCCCTCGCCGAGAGGAGTCTCAGAATTCG
AGTAGGGTGTTTTGTATTTTGTGTTTCCCCTCGCGTGCCCGGTTTTGTCG
CCACGCGGGCTTGTCCTCTCCACCTCACAACCTAGTACCATATCCCTTCT
CCTCTTCCCCCCCACAGTTTCCATCCGCACTTGAGAATCGGCAGTTAAGA
AATTGAGCCTAAAAAACTCAAATCTAAGAACTTGAGCAACATCTATGAGC
TCGGTCAAATAACCATTACACTAAAACCGTTACACTTGAGATATGTTTGA
CGGTCCATCGTGCATAGCATAACCCTAGGAACCAAGAACCCCCAACCCCG
GCAAAAACTAGAGGTTCTGGAGTGCGGGGGCTAACTGCTGTAGTACCTCT
CCTTCCCCACCCTTCGTCCCCTGCTGTCACCGCGACAACCAACCTACCGC
CAGTCAAGATGAAGAACGAGGTGGCTCTTCAGGTCGCCACAAACAAGAAG
GGCAGCCGTCGCACGAGGACGGTCAACTTTAACGGGGGGATCGACTCTTG
CCCTTGTCTCGTGCTCAACGCCGACTACCAGCCCCTGTCCTATCTCCCAC
TCAGGCACGTATTTGTGTCACCCGTGCGCACAAGAGGCTGCGTGTTTAGC
CAGACCTCGAGGAGAAGAAATAGGTCGCAACCTCGAGCTTGTCAAGGAGG
ATCATATACATGTATCATGTTTCTAGTTTTCGCGAAAGTGACAACCGAGA
GATCTTGGCGTGGTCTCTTGAAGACGATGTAAACCCCTTCGAAACTCAAA
GTGGGGTGTTGCGGTTGCTTAACACGAGAAAATAATTTTTTCAGGGTTGT
GGTCTACCTGTACGTCATGCTTTGCTGTGTATCTATTTCCTTGTGCGCCA
TGTTCGCTCTGTTGCAACCCGCCGTTAACGTGTTGGTTTCACCCCGAGGG
GCGTTTGATACAGTACCACCCATCAGGTGATGCTGTTGTTGTTGTGGTTG
TCTTCACATTCCGGTGCTGTTGTCTTCACATTCCGGTATCTACTCGGTAC
CTTCTATTTGTAGCACCCTTAACTGGTCCAACACTACTCGACAACGACTC
GCCCATAGGGCCACCGACGCTTCCGTATCGGCTCTGCTTGCACCACCGGC
CGCCTCCCTTGACTTCCCTCTCTTCCCCACCCCGCTGCAGTTTGTGGGGA
TGGCAGGATGTGATCAAGGCAGTGTTCAGCGAGAAGGTTGTGGTGTTGGC
CACCTACGGGGACCGTTCCGTTCGGTCCCCCAGCGTTGTGGTACAGCTCC
CGAGCGTTATTGCTCTCAAGGTGGGAAGTGAGGGTGGCCGCCGTGCTTGG
CTTATTCCAAAGCGAGTGGTTTATCCTCTTACAGAGACAGTGCACCCGTA
GGCGAGTACCCACAGCGGAGTACTGTGTTTTGTGCTGCCTGGGCAGCTCC
GACACGGTGTGGTTTGTTAAGAGCGTTTGCTGCGTCGCCCGGGATCCACG
CATGTTCCAGGAGCATGTAACGCTCAAGATGACAAAGATGCGTGATCCGT
GCTTTACACAACACCCGTTTGCAATCAATCGAGAGCGCCTCTGGCCTCGT
CTGGGCTGTGATCGCACCGCAAATTATGGGGTGTTAATGGATATGATAGA
CCCTGCTGCTTTATATCGCGAGCAATGTGTTTCTGTTTCCGAAGCCATCC
TTGTTGCCAAGCTGGTGAGGTTGCACTCTCTCTCCCCTCTGTGCACGGCG
TGTGCTTGCTCTCACATATGCACGGAGCTCGACGTCTCTACCCCCCAACC
CCCCACCCCCCCTGCCCGCTCCGCGACACCCCCACAGGAATTTGTGAATA
ATCATAGGAGCCACCCGCCCTTTACGCGGCGTAACCTGTTCCTGCGCGAC
TCGCACCAGTGCCAGTACTGCCAAAAGTATTTTGCCCCGCACAACCTGAG
CTTCGATCACGTCGTGCCAAAGAAGCTTGGCGGCAAGGGCACCTGGGACA
ACGTCGTCACCGCGTGCGGGAGGTACGTGCTGCTGCTTGCTGCTGCTGCT
GCTGCTGCTGCTGCTCCGCGCCTGTGTGTCTGTGCGTGTTTGGGTGCAGC
AGCAGCAGCTTCGTCATAGGCCGAACGAGGTTTTGACTCGAGACCTTGAT
TTCTTATTAGATAGTGACAAGGCATTAGGAAGGCAATAACAGGAGCCCCA
CGCGTCATGTCCATCATACCCACATCATCATTCACGAACCCCCGCCGGAG
GCCCCGTAGATCAGCGCTCTACCGAACACCCCCAAAACAGAGCGTACCCT
TGTCTTACCCGTATGGCAAGTGTCCTAGCGACGGGTCGCATGTATCAGAG
CCAAGGGAGATACCTCGATAATCCGTTCAACGTACCACACATTGGTTCTC
GCCACCCGAGGTCGACCACAACACCACAACCATATCGCGCTGCCGCCGTG
ATTGTGCGCGTCTAGATGCAACAACCGCAAGAGCGACTGCCACCCGCGAG
ACCTCAAGTCCATAGGGATGAGCCTCGCCAAGTACCCGGTCACGCCCACG
TTCAGCCAGCTGCAGGCCAAGGCTAGAAGGTACCCGCCCCTCGAAATTCA
CGAAACTTGGGAAGACTACCTTTACTTCGAGAGCGAGATCCTCGAGGAGG
AGGACGGGGGTGACGCGGACGAGACCCCATAGAAAGAGTGGGTGGGGTCG
TGGGACTTAGGAGGGAGGATTACGAACGTCTGGGGGTGGGTTAGTTGTGC
TCGTGTCGGGTAGCTGCGTGGCTGTTGTGTCGGCGGCCGACCGGAGAAAA
GGATGTGTGGAGAGGAAAGGAGCGAGGAACGGAGGATGCAAATATTGTTT
ATGTATTGTCAAATAAATAAAAAAATGAGGTGTTTTGAAAGAGTTACTCT
CTGGCCCCGGGGAAATAAGAAAAAAAAACACGAAGGAAGGCAACGAAAAC
ACACAAGTTCATGCTAAGCCAGACCGCATGGTGTAGGCTTTCGTGGTGTG
TGTTTCGCCAATGAACAAAAGGGGTGTTTTTGTATGTATGGAGGAGGCTT
GTTGGTACGGTGGACGCCGGGACCCCAAAGATTGTAATAACGTTTTGTGG
TGGGCGGTAAGGAAATGTATTGAAGTGTCGCGACTGCTGCTGGTGTGTCG
CGGCCTGTCTGATTTCGGGCGTTGTTGATATGTTGTATTGAGGGCCTTTG
AGAGCGGGAGATGCGTCACATGTACGCGGGTGGAGGGAAAGGGGAGGAGA
GGAGGTATTGTGTGTGTACGTTTCACAATTTGTTCCCCTCCCGGAATTGC
CTCCCGGATGGAAGATGATTCTGATTCACCTCTCTCGGGAGATCGGATCG
AGCTCAATCATACTCGTCGCGGGACGTTTTCAGCTTTGGATGCAAAGCGT
TGGCAGGGGCCGCACGCAGGTGACTTTTTTAGGGGCTGTGGTGCTCTTCC
CGTGTGCGGGCTGCGCGGGCTCGGCTAGCGGCGACCAATGCGAGAAAAAC
GGGGGGTTCCGTGGTATGTGTATTTGTCGTGGTACCCGTTATTCCTTTGT
TGACTGTTTGTGTCGAAAGAAGCACGTTAAGCCTCCTTCCTTCAGAGTGG
CATGGTTCTCCTGCAAGTGCTCCTTTGTTTTGGAAAAGCACGTGGCATGA
TACAAGAGAGCGTTCGTCGTTCCGCCGTGCCTGCTGCGAGTTTTCTACTG
GTACCCTCGTCGAGTTGGCGTCGTGGGTGTTCATAAGAGAGCGGTCCTGT
GCGACGCGAAATTGGGGATATGCTTAGGGGTGCCCTCTCGGTCTCGCCCC
GGTCTTGTAATATTCTCGATTTGTCTTTTTTTCTCCCCCCTCGCGTGGGG
CCACAACAGCTCTACTGCATCGGAGAAAACGTGGTTCCTTGGGAGCTTGC
GCCGTAAGGCCAGAGAGAGCAAGGTGCTCCAGCGCTCTGTTTCCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig72:666876..672420+

>mRNA_E-siliculosus-1a_M_contig72.15410.1 ID=mRNA_E-siliculosus-1a_M_contig72.15410.1|Name=mRNA_E-siliculosus-1a_M_contig72.15410.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2022bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:666876..672420+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGCACCGAAAGAGAGCGAGGAACAATGGATCGAGGGCCAAGACGTG
GTTCCTTGGAGCTTGTGTCATGAACGCCGCAGCGCAAGGCGCTTCGGCGT
TCGCCTTTTCCTCATATTCTGCTTCGTCTTTTTCTCTCCGCGGGCAAGCC
GATCCCGCCTCCAGAGGTATCGTGCTGGCAAAGCAGGCTGTAGCGCCGGC
TGGGCGGGCGGAGAACCTGCTGTCGATGAAAATAAAGAACGCGGGGAAGA
AGCCCGTTCGGTCAAGACGGAGCGGGCCTCCTGCTAACGTGGAGGGCTAC
TCCCACGCTGCTTTCGATGGCGCACCGAAAGAGAGCGAGGAACAATGGAT
CGAGGGCCAAGACGTGGTTCCTTGGAGCTTGTGTCATGAACGCCGCAGCG
CAAGGCGCTTCGGCGTTCGCCTTTTCCTCATATTCTGCTTCGTCTTTTTC
TCTCCGCGGGCAAGCCGATCCCGCCTCCAGAGGTATCGTGCTGGCAAAGC
AGGCTGTAGCGCCGGCTGGGCGGGCGGAGAACCTGCTGTCGATGAAAATA
AAGAACGCGGGGAAGAAGCCCGTTCGGTCAAGACGGAGCGGGCCTCCTGC
TAACGTGGAGGGCTACTCCCACGCTGCTTTCGTCAAGATGAAGAACGAGG
TGGCTCTTCAGGTCGCCACAAACAAGAAGGGCAGCCGTCGCACGAGGACG
GTCAACTTTAACGGGGGGATCGACTCTTGCCCTTGTCTCGTGCTCAACGC
CGACTACCAGCCCCTGTCCTATCTCCCACTCAGGCACGTATTTGTTCAAG
ATGAAGAACGAGGTGGCTCTTCAGGTCGCCACAAACAAGAAGGGCAGCCG
TCGCACGAGGACGGTCAACTTTAACGGGGGGATCGACTCTTGCCCTTGTC
TCGTGCTCAACGCCGACTACCAGCCCCTGTCCTATCTCCCACTCAGGCAC
GTATTTGTTTTGTGGGGATGGCAGGATGTGATCAAGGCAGTGTTCAGCGA
GAAGGTTGTGGTGTTGGCCACCTACGGGGACCGTTCCGTTCGGTCCCCCA
GCGTTGTGGTACAGCTCCCGAGCGTTATTGCTCTCAAGTTTGTGGGGATG
GCAGGATGTGATCAAGGCAGTGTTCAGCGAGAAGGTTGTGGTGTTGGCCA
CCTACGGGGACCGTTCCGTTCGGTCCCCCAGCGTTGTGGTACAGCTCCCG
AGCGTTATTGCTCTCAAGGAATTTGTGAATAATCATAGGAGCCACCCGCC
CTTTACGCGGCGTAACCTGTTCCTGCGCGACTCGCACCAGTGCCAGTACT
GCCAAAAGTATTTTGCCCCGCACAACCTGAGCTTCGATCACGTCGTGCCA
AAGAAGCTTGGCGGCAAGGGCACCTGGGACAACGTCGTCACCGCGTGCGG
GAGGAATTTGTGAATAATCATAGGAGCCACCCGCCCTTTACGCGGCGTAA
CCTGTTCCTGCGCGACTCGCACCAGTGCCAGTACTGCCAAAAGTATTTTG
CCCCGCACAACCTGAGCTTCGATCACGTCGTGCCAAAGAAGCTTGGCGGC
AAGGGCACCTGGGACAACGTCGTCACCGCGTGCGGGAGATGCAACAACCG
CAAGAGCGACTGCCACCCGCGAGACCTCAAGTCCATAGGGATGAGCCTCG
CCAAGTACCCGGTCACGCCCACGTTCAGCCAGCTGCAGGCCAAGGCTAGA
AGGTACCCGCCCCTCGAAATTCACGAAACTTGGGAAGACTACCTTTACTT
CGAGAGCGAGATCCTCGAGGAGGAGGACGGGGGTGACGCGGACGAGACCC
CATAGATGCAACAACCGCAAGAGCGACTGCCACCCGCGAGACCTCAAGTC
CATAGGGATGAGCCTCGCCAAGTACCCGGTCACGCCCACGTTCAGCCAGC
TGCAGGCCAAGGCTAGAAGGTACCCGCCCCTCGAAATTCACGAAACTTGG
GAAGACTACCTTTACTTCGAGAGCGAGATCCTCGAGGAGGAGGACGGGGG
TGACGCGGACGAGACCCCATAG
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