mRNA_E-siliculosus-1a_M_contig72.15387.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15387.1
Unique NamemRNA_E-siliculosus-1a_M_contig72.15387.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:423898..424582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size450
Model size685
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15387.1prot_E-siliculosus-1a_M_contig72.15387.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig72 423922..424371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935979.2253299-UTR-E-siliculosus-1a_M_contig72:423897..4239211622935979.2253299-UTR-E-siliculosus-1a_M_contig72:423897..423921Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 423898..423921 +
1696250874.7955585-UTR-E-siliculosus-1a_M_contig72:423897..4239211696250874.7955585-UTR-E-siliculosus-1a_M_contig72:423897..423921Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 423898..423921 +
1622935979.2606149-UTR-E-siliculosus-1a_M_contig72:424371..4245821622935979.2606149-UTR-E-siliculosus-1a_M_contig72:424371..424582Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 424372..424582 +
1696250874.8160799-UTR-E-siliculosus-1a_M_contig72:424371..4245821696250874.8160799-UTR-E-siliculosus-1a_M_contig72:424371..424582Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 424372..424582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935979.2439642-CDS-E-siliculosus-1a_M_contig72:423921..4243711622935979.2439642-CDS-E-siliculosus-1a_M_contig72:423921..424371Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 423922..424371 +
1696250874.80505-CDS-E-siliculosus-1a_M_contig72:423921..4243711696250874.80505-CDS-E-siliculosus-1a_M_contig72:423921..424371Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 423922..424371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig72.15387.1

>prot_E-siliculosus-1a_M_contig72.15387.1 ID=prot_E-siliculosus-1a_M_contig72.15387.1|Name=mRNA_E-siliculosus-1a_M_contig72.15387.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=150bp
MKRFSQLSSRKNRALCVAPYCFHLFPGRVWSAVQLVYLQYNIPRRRVGAC
YYSVPPFRSALPPCSAVYSTCPRPRYSVPASSKKAAPIPSDITASCGRHS
RVHACTIRPFPRYLQTQEESQESKSKRGDIAYILDNMEYPTQTTERATT*
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mRNA from alignment at E-siliculosus-1a_M_contig72:423898..424582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig72.15387.1 ID=mRNA_E-siliculosus-1a_M_contig72.15387.1|Name=mRNA_E-siliculosus-1a_M_contig72.15387.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=685bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:423898..424582+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGACGCACTCGCGGCAACCCCAATGAAGCGGTTTAGTCAATTATCTTC
CCGAAAAAACCGTGCTCTGTGCGTCGCGCCTTATTGTTTTCATTTATTTC
CAGGGCGGGTGTGGTCTGCTGTGCAGTTAGTCTATCTACAGTACAATATA
CCTCGTCGTCGTGTGGGTGCTTGTTATTATTCTGTTCCGCCTTTTCGTTC
TGCTCTCCCCCCGTGTTCCGCAGTTTATTCAACTTGCCCGCGCCCACGGT
ACTCCGTACCGGCTAGTAGCAAAAAGGCTGCACCCATTCCCTCGGATATT
ACTGCGTCTTGTGGACGACACTCTCGTGTGCATGCATGCACCATCCGCCC
TTTTCCTAGGTACCTTCAGACACAGGAAGAGTCCCAAGAGTCAAAATCGA
AGAGAGGGGACATCGCGTACATACTGGATAATATGGAGTACCCAACACAG
ACTACAGAACGCGCCACCACTTAAGAACTCAACAGTTAAGAACTTGAGCC
TCAAAAAATCCAAAAACTAAGAACATGGCCATAAGAACATGTGCTCAGTT
CGGACGTCGTGTAAGAACTAGAACCCGCGTTTGGTAGTGTACCAATGCTC
ACACAGATACGAACGGAGCCCAAAAGACGGGCGGCTGCAAGATAAGAACG
CGAGCGAAGGTGGCGGGGGTAACCCCAACAGCAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig72:423898..424582+

>mRNA_E-siliculosus-1a_M_contig72.15387.1 ID=mRNA_E-siliculosus-1a_M_contig72.15387.1|Name=mRNA_E-siliculosus-1a_M_contig72.15387.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:423898..424582+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGCGGTTTAGTCAATTATCTTCCCGAAAAAACCGTGCTCTGTGCGT
CGCGCCTTATTGTTTTCATTTATTTCCAGGGCGGGTGTGGTCTGCTGTGC
AGTTAGTCTATCTACAGTACAATATACCTCGTCGTCGTGTGGGTGCTTGT
TATTATTCTGTTCCGCCTTTTCGTTCTGCTCTCCCCCCGTGTTCCGCAGT
TTATTCAACTTGCCCGCGCCCACGGTACTCCGTACCGGCTAGTAGCAAAA
AGGCTGCACCCATTCCCTCGGATATTACTGCGTCTTGTGGACGACACTCT
CGTGTGCATGCATGCACCATCCGCCCTTTTCCTAGGTACCTTCAGACACA
GGAAGAGTCCCAAGAGTCAAAATCGAAGAGAGGGGACATCGCGTACATAC
TGGATAATATGGAGTACCCAACACAGACTACAGAACGCGCCACCACTTAA
ATGAAGCGGTTTAGTCAATTATCTTCCCGAAAAAACCGTGCTCTGTGCGT
CGCGCCTTATTGTTTTCATTTATTTCCAGGGCGGGTGTGGTCTGCTGTGC
AGTTAGTCTATCTACAGTACAATATACCTCGTCGTCGTGTGGGTGCTTGT
TATTATTCTGTTCCGCCTTTTCGTTCTGCTCTCCCCCCGTGTTCCGCAGT
TTATTCAACTTGCCCGCGCCCACGGTACTCCGTACCGGCTAGTAGCAAAA
AGGCTGCACCCATTCCCTCGGATATTACTGCGTCTTGTGGACGACACTCT
CGTGTGCATGCATGCACCATCCGCCCTTTTCCTAGGTACCTTCAGACACA
GGAAGAGTCCCAAGAGTCAAAATCGAAGAGAGGGGACATCGCGTACATAC
TGGATAATATGGAGTACCCAACACAGACTACAGAACGCGCCACCACTTAA
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