mRNA_E-siliculosus-1a_M_contig72.15370.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15370.1
Unique NamemRNA_E-siliculosus-1a_M_contig72.15370.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: D8LIF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF8_ECTSI)

HSP 1 Score: 493 bits (1269), Expect = 8.590e-175
Identity = 255/260 (98.08%), Postives = 258/260 (99.23%), Query Frame = 1 
Query:    1 MDLAATDSHGGGSGGGINTDNGGTPAMTGSGEHQRTSASTGAAAGGMQPQAGGQGVYGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKE 780
            MDLAAT+SH GGSGGGINTDNGGTPAMTGSGEHQRTSAS GAAAGGMQPQAGGQGVYGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQL+VLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHA+GLMEHQRKLQQELRDKPPKWSKE
Sbjct:    1 MDLAATESHRGGSGGGINTDNGGTPAMTGSGEHQRTSASAGAAAGGMQPQAGGQGVYGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLDVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAIGLMEHQRKLQQELRDKPPKWSKE 260
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A7S2WV09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV09_9STRA)

HSP 1 Score: 299 bits (766), Expect = 3.520e-97
Identity = 149/234 (63.68%), Postives = 184/234 (78.63%), Query Frame = 1 
Query:  145 PQAGGQGVYGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            P   G   Y  EE+ ALKGIF LYD + TG+I   ELE +L+K+G+  D    ++AA+          V+F++F++L+E+  P  P EGPDPKVMEFLRILEEYR+KCE+ GDYLEAGRAQ QL  LRRQE +RQQKAVRARQ+ ER DVQ+AHNMQ+QDFN AW++YLEEYD+MAQMY+QQMTERHAV L++ QR LQ ++ +KPPKWS+ELLEWRRRQH+LARQKNYAEAQ+
Sbjct:   10 PDGAGADSYTAEEIHALKGIFALYDPDKTGSIPASELESLLEKIGYTGDSKQDILAASKELS-----NVTFEEFLQLIEKGQPQQPGEGPDPKVMEFLRILEEYRLKCEDEGDYLEAGRAQEQLETLRRQEEKRQQKAVRARQIAERSDVQIAHNMQYQDFNKAWDRYLEEYDKMAQMYIQQMTERHAVNLLDFQRNLQSQMAEKPPKWSRELLEWRRRQHMLARQKNYAEAQR 238
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A6V1W3Y9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3Y9_HETAK)

HSP 1 Score: 298 bits (763), Expect = 1.650e-96
Identity = 152/232 (65.52%), Postives = 186/232 (80.17%), Query Frame = 1 
Query:  169 YGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAG-MDGRVSFDQFIRLL---EQAGPAGPLE--GPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            + REE++AL GIF LYDA+N+G I V+ELE I  K+G NPD+ A ++    N   G  DG++SFD+F+ LL   + AG   P    GPD KV+EFLRILEEYR+KCEE GDYLEAGRA RQL +L+ QE +RQQK +RARQ+ ERQDVQ+AHNMQ+ DFNAAW+KY+EEYD MAQMY+QQMTERHAV L+E Q+ LQQE+RD+PPKW +ELLEWRRRQH++ARQKNYAEAQK
Sbjct:   16 FSREEINALHGIFALYDADNSGYIQVEELENIFTKIGKNPDEAAALLQEVDNRAGGERDGQISFDEFVDLLALQKAAGDGDPNSDGGPDQKVLEFLRILEEYRLKCEEEGDYLEAGRANRQLGLLKAQEEKRQQKTIRARQVAERQDVQIAHNMQYNDFNAAWDKYMEEYDGMAQMYIQQMTERHAVNLLEFQQGLQQEMRDRPPKWGRELLEWRRRQHLMARQKNYAEAQK 247
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A7S2GCP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCP4_9STRA)

HSP 1 Score: 294 bits (752), Expect = 6.680e-95
Identity = 148/226 (65.49%), Postives = 183/226 (80.97%), Query Frame = 1 
Query:  169 YGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            Y  +E++AL+GIF LYD E +G+I   ELE +L+K+G+  D    ++ AA     GM+  VSFD F+ LLE+  P+ P E PDPKVMEFLRILEEYR+KCEE G+YLEAGRA  QL+ LR+QE +RQQKAVRARQ+ ER DVQ+AHNMQ+ DFNAAW++YLEEYD+MAQMY+QQMTERHAV L++ QR LQ E+ ++PPKWS+ELLEWRRRQH+LARQKNYAEAQK
Sbjct:   10 YSADEINALRGIFALYDPEKSGSISAAELESLLEKIGYTGDSKVDILDAAQ----GMES-VSFDDFLDLLEKGQPSQPGEAPDPKVMEFLRILEEYRIKCEEEGNYLEAGRAHEQLDTLRKQEEKRQQKAVRARQISERSDVQIAHNMQYSDFNAAWDRYLEEYDKMAQMYIQQMTERHAVNLLDFQRALQTEMTERPPKWSRELLEWRRRQHMLARQKNYAEAQK 230
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A7S2XWE0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE0_9STRA)

HSP 1 Score: 273 bits (699), Expect = 1.620e-87
Identity = 143/213 (67.14%), Postives = 170/213 (79.81%), Query Frame = 1 
Query:  250 ELEGILQKVGHNPDDVARVMAAA-------ANTDAGMDGRVSFDQFIRLLE-----QAGPAGPLEGP--DPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            ELE ILQK+GH+P+  A +M AA         +    DGR+SF++F+ LLE     + G  G   G   DPKVMEFLRILEEYRVKCEE GDYLEAGRA +QL VL++QE RRQQKAVRARQ+ ERQDVQ+AHNMQ+ DFN AW+KY+EEYD MAQMY+QQMTERHAV L+E QR+LQQE++++PPKWS+ELLEWRRRQH+LARQKNYAEAQK
Sbjct:    1 ELESILQKIGHDPESAASLMQAADGVVTQSRGSQQEADGRISFEEFLMLLELRDQKEGGGIGGSSGEVTDPKVMEFLRILEEYRVKCEEEGDYLEAGRANKQLQVLKKQEERRQQKAVRARQVAERQDVQIAHNMQYSDFNTAWDKYMEEYDSMAQMYIQQMTERHAVNLLEFQRRLQQEMQERPPKWSRELLEWRRRQHMLARQKNYAEAQK 213
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A7S4EBY1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBY1_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.370e-86
Identity = 138/227 (60.79%), Postives = 174/227 (76.65%), Query Frame = 1 
Query:  166 VYGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
             Y +EE+SAL+GIF LYD + TG I   +LE +LQK+G   +    ++      D      V F +F+ L++   P  P E PDPKV+EFLRILE+YR KCE+ G+YLEA RA +QL +LR+QE +RQQKAVRARQ+ ERQDVQ+AHNMQ+ DFNA+W+KYL EYDRMAQ+Y+QQMTERHA  L+E QRKLQ E+ ++PPKWS+ELLEWRRRQH+LARQKNYAEAQ+
Sbjct:   37 AYSKEEISALRGIFALYDPDGTGEISSADLESLLQKIGLKQEAARELIE---RFDVTEPTTVDFAKFLELVKAGQPDQPGEEPDPKVLEFLRILEQYRRKCEKEGNYLEADRAHQQLEMLRKQEEKRQQKAVRARQIAERQDVQIAHNMQYTDFNASWDKYLAEYDRMAQIYIQQMTERHATNLLEFQRKLQSEMAERPPKWSRELLEWRRRQHMLARQKNYAEAQR 260
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A7S1C3U0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3U0_9STRA)

HSP 1 Score: 254 bits (649), Expect = 1.410e-79
Identity = 127/223 (56.95%), Postives = 170/223 (76.23%), Query Frame = 1 
Query:  178 EEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            EE++AL+ IF+ +D +  G I   E+E +++K+G +P D A ++    + D    G ++FD+F+ L+ QA  A P E  DPKV+EFLRIL+EYR+KCE  G+YLEAGRA  QL  LR+QE +RQ KA++ARQL ER DVQ+AHNMQ+ +FN AW+KY+EEYDRMAQMY+QQM+ERHAV L E Q KL +EL  +PPK+S+ELL+WR+RQ +LA+QK YAEAQK
Sbjct:   28 EELAALRSIFDQFDTDGGGAISTAEMEAVMEKLGRDPADAAELLR---DVDPDRSGTITFDEFVGLVNQARDAPPGEAADPKVLEFLRILDEYRLKCESEGNYLEAGRAAGQLETLRKQEEKRQHKALKARQLAERHDVQIAHNMQYAEFNEAWDKYMEEYDRMAQMYIQQMSERHAVKLREFQEKLHEELTKRPPKFSRELLDWRQRQLMLAKQKKYAEAQK 247
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A7S3HQS7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQS7_9STRA)

HSP 1 Score: 250 bits (639), Expect = 3.520e-76
Identity = 127/228 (55.70%), Postives = 168/228 (73.68%), Query Frame = 1 
Query:  169 YGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAG--PLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            Y  EE+S ++ +F+  D +  G I + +L G+L K+G + D++ R+   A+       G + FD  + LL+    +   P EG DPKV+EFL+ILEEYRVKCEE G+YLEA RA RQL VLR+QE +RQQKA+ ARQ+ E+QDVQ+AHNMQF +FN +W+KYLE+YD MAQ Y+QQMTERHAV L+E Q++L+++L DKPPKWSKELL+ RR+QHI AR KNY  AQK
Sbjct:   11 YSAEEISVIRTVFDSCDGDRVGRIHINQLSGLLMKLGKDDDEIVRLTETASKVADDNQGMLQFDDVLYLLQSVEKSYELPFEGSDPKVLEFLQILEEYRVKCEEEGNYLEAARAYRQLGVLRKQEEKRQQKAITARQISEKQDVQLAHNMQFNEFNKSWDKYLEDYDSMAQTYIQQMTERHAVVLLEFQKQLRKDLADKPPKWSKELLDQRRKQHINARNKNYTLAQK 238
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A812YQH7_SYMMI (Aste57867_22357 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YQH7_SYMMI)

HSP 1 Score: 235 bits (599), Expect = 7.930e-74
Identity = 116/168 (69.05%), Postives = 145/168 (86.31%), Query Frame = 1 
Query:  349 VSFDQFIRLLE--QAGPAGPLEGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            VS+DQF+ +++  ++  A   EGPDPKV+EF+RILEEYRVKCEE G+YLEAGRA +QL++LR QE +RQQKA++ RQ+ ERQDVQ+AHNMQF +FNAAW+KY+EEYD MAQ+Y+QQMTERHA+ L+E+Q++L+ EL  KPPKWSKELLEWRRRQHILAR K Y EAQK
Sbjct:    2 VSYDQFLSVIKSLESNAAAVAEGPDPKVVEFMRILEEYRVKCEEEGNYLEAGRAHKQLDILRVQEEKRQQKAIKVRQITERQDVQLAHNMQFSEFNAAWDKYMEEYDNMAQVYIQQMTERHAIVLLEYQKQLRAELAGKPPKWSKELLEWRRRQHILARGKKYTEAQK 169
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Match: A0A6A4DEK9_9STRA (EF-hand domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DEK9_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.340e-73
Identity = 130/241 (53.94%), Postives = 167/241 (69.29%), Query Frame = 1 
Query:  178 EEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVARVMAAAANTDAGMDGRVSFDQFIRLLEQ----------------AGPAGPL--EGPDPKVMEFLRILEEYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQVAHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQELRDKPPKWSKELLEWRRRQHILARQKNYAEAQK 846
            EE+ AL+ +FN+YD + +G I  + +  IL K+G    D +  +    +  AG  G +SFD F+ L++                 AG  G     GPDPKVMEF+ ILEEYR+KCEE G+YLEA RA  QL  LRRQE +RQ K+++ARQ+ ERQDVQ+AHNMQF DFN AW++Y+EEYDRMAQ YV+QMTE+HA  L   Q KLQQE+ ++PPK+SKEL+EWRRRQH LA+QK+YAEAQK
Sbjct:   12 EELGALRAVFNVYDEDGSGCIPTEHIPEILDKLGR---DASEELLNELDDCAGDSGIISFDDFVSLIQNHVLRQQELEQELAGGGAGVGGDRLRPGPDPKVMEFIAILEEYRLKCEEDGNYLEAQRADSQLTALRRQEFKRQSKSLKARQIAERQDVQIAHNMQFNDFNQAWDQYMEEYDRMAQAYVKQMTEKHAADLAAFQDKLQQEILERPPKFSKELIEWRRRQHRLAQQKSYAEAQK 249
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIF8_ECTSI8.590e-17598.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WV09_9STRA3.520e-9763.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1W3Y9_HETAK1.650e-9665.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2GCP4_9STRA6.680e-9565.49Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWE0_9STRA1.620e-8767.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4EBY1_9STRA1.370e-8660.79Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1C3U0_9STRA1.410e-7956.95Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3HQS7_9STRA3.520e-7655.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812YQH7_SYMMI7.930e-7469.05Aste57867_22357 protein (Fragment) n=1 Tax=Symbiod... [more]
A0A6A4DEK9_9STRA1.340e-7353.94EF-hand domain-containing protein n=11 Tax=Phytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:218948..224416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size867
Model size867
Exons5
Ec32 orthologEc-18_003840.1
Ec32 ortholog descriptionEF-hand domain pair
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CNBR@1,2QV22@2759
Seed eggNOG ortholog2880.D8LIF8
Seed ortholog evalue9.2e-137
Seed ortholog score493.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15370.1prot_E-siliculosus-1a_M_contig72.15370.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig72 218948..224416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935984.5288236-CDS-E-siliculosus-1a_M_contig72:218947..2192361622935984.5288236-CDS-E-siliculosus-1a_M_contig72:218947..219236Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 218948..219236 +
1696250877.4527416-CDS-E-siliculosus-1a_M_contig72:218947..2192361696250877.4527416-CDS-E-siliculosus-1a_M_contig72:218947..219236Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 218948..219236 +
1622935984.5412166-CDS-E-siliculosus-1a_M_contig72:220706..2208401622935984.5412166-CDS-E-siliculosus-1a_M_contig72:220706..220840Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 220707..220840 +
1696250877.4692302-CDS-E-siliculosus-1a_M_contig72:220706..2208401696250877.4692302-CDS-E-siliculosus-1a_M_contig72:220706..220840Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 220707..220840 +
1622935984.5578773-CDS-E-siliculosus-1a_M_contig72:221159..2213331622935984.5578773-CDS-E-siliculosus-1a_M_contig72:221159..221333Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 221160..221333 +
1696250877.4803495-CDS-E-siliculosus-1a_M_contig72:221159..2213331696250877.4803495-CDS-E-siliculosus-1a_M_contig72:221159..221333Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 221160..221333 +
1622935984.5752614-CDS-E-siliculosus-1a_M_contig72:222061..2222411622935984.5752614-CDS-E-siliculosus-1a_M_contig72:222061..222241Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 222062..222241 +
1696250877.4907753-CDS-E-siliculosus-1a_M_contig72:222061..2222411696250877.4907753-CDS-E-siliculosus-1a_M_contig72:222061..222241Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 222062..222241 +
1622935984.5970225-CDS-E-siliculosus-1a_M_contig72:224326..2244161622935984.5970225-CDS-E-siliculosus-1a_M_contig72:224326..224416Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 224327..224416 +
1696250877.5014908-CDS-E-siliculosus-1a_M_contig72:224326..2244161696250877.5014908-CDS-E-siliculosus-1a_M_contig72:224326..224416Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 224327..224416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig72.15370.1

>prot_E-siliculosus-1a_M_contig72.15370.1 ID=prot_E-siliculosus-1a_M_contig72.15370.1|Name=mRNA_E-siliculosus-1a_M_contig72.15370.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=289bp
MDLAATDSHGGGSGGGINTDNGGTPAMTGSGEHQRTSASTGAAAGGMQPQ
AGGQGVYGREEVSALKGIFNLYDAENTGTIGVKELEGILQKVGHNPDDVA
RVMAAAANTDAGMDGRVSFDQFIRLLEQAGPAGPLEGPDPKVMEFLRILE
EYRVKCEEGGDYLEAGRAQRQLNVLRRQETRRQQKAVRARQLCERQDVQV
AHNMQFQDFNAAWNKYLEEYDRMAQMYVQQMTERHAVGLMEHQRKLQQEL
RDKPPKWSKELLEWRRRQHILARQKNYAEAQKASTHGA*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig72:218948..224416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig72.15370.1 ID=mRNA_E-siliculosus-1a_M_contig72.15370.1|Name=mRNA_E-siliculosus-1a_M_contig72.15370.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5469bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:218948..224416+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGATCTCGCTGCCACTGATTCGCACGGAGGAGGCAGCGGCGGCGGCAT
AAACACCGACAACGGGGGCACACCTGCGATGACGGGAAGTGGGGAACACC
AGCGTACGTCGGCATCGACGGGAGCAGCGGCCGGGGGAATGCAACCACAA
GCTGGAGGGCAAGGAGTGTACGGGAGGGAGGAAGTTTCAGCCCTGAAAGG
AATTTTCAACCTTTATGACGCCGAGAACACAGGGACGATAGGGGTGAAGG
AGCTCGAGGGCATCCTTCAGAAAGTGGGACATAATCCTGGTGAGTGCGTG
CTACTGTACACGTACTGTCAGTAGCACCTGGGTAGAGAGGGACTTGGTAG
GACAAACAAATGTTAAGTTCTTCGGCTGACCCGGCTTGTGTATACCAAAA
TCACAAGCATGCTACACATCGCGTGCTCGGCGACAAGTTAGTTCATGTGT
GTGTCTTAACCTATGAACCGTCAGACACAATATACAAGGAGCTCGGCCCA
AAGAAGGTCATACACCTCCTCCAGACGGGGTGGGTCGGCTCCAACGGCTC
TGCTGCTAAACAATGTTGGTATCTCGGGAATGTGAGGTGTGTGGTGTGAG
GCTTGAAGCTGACGAAAGCCGCGTGCAGATGACCTTTAGCACGGGCTTGT
CAAGTGTGTCGAAAGATCCAAATCTCTGTCCGCAGCTCGTGCGTATGACA
AGAGATCTACAATGCGAGTGACGTCCGATGTACGTAAGCAAAGCACGTGG
TGCGATCTTACAGTCGGTCACAAGCGGAACTCGGAGCACAGCGTATCCGC
ACGTGGTGCGTTGCGACACGGCTTACACTGCTCGTGGCAATCAACCTCCG
TGAGAGATTGTGCCGGCGGACTCTTGTATGAGTACGAAGAGTTCCCAGGT
GGAAAGAATGTTGGACAAATGTAGTTATTTGGTCGGTGAGACCGGAAGGA
AAACAGAGTGAGAGGATGGGGGCTGCACGGGGGCTGCACCATCCAAACAA
AAGACATACCGACGGAAACACAGTTGAACTTGTGTCCCAAAGTGTCAACC
CATCATATAACTAGACCTCTTCGACAAAGATCCAGTTGAACTTATAAACC
AAAGTGTCAACCAATCAGATGACAAGACCCCTTGGGCGTAGATCCGACTG
ACGTCGTCTCGTACGTATACAAAACGTACTCAACATGGCTAACAAGTATT
TCTAGCTACGTACCTACGTACGTAATACGATTCAGCAATCTGTAACACTC
AGAATGAGAACTGCTGAACATATGTATGTCAAGAACAAATTACAAAGTCC
ATCAGAATGAACTAGAACGCACTCTGCTCTTCCAGCAGTATATGTCAAAC
ACAGAATGCACGCCTGCACTACTGCGTGTCTACTTGATGCGAAGGTGAGC
GACATTGTACGTATCGCTGTGTACCTATAATCATCGCATGTACTATGCAA
TGTAAATATCCAACATGGTACACCACAAAGTAGTGCTGTAGTAACTTTTC
ATTTTTAAATGACGTCACGATAAAAATTTAGGCGCGCACCGCGTGGGGGA
AGGTGGAGCACAGCAAAACAAACACATATATATGCGCCGAAAGGCTTATA
AACTGCGCCAGAGTACTGTCGATAGGACGAACAAGGACACACACCAGGGC
AGCATTGGGGCTATCAAATTTACTGCCAGCAGCCAACCACGACAAACATC
ATATCAACAAGGCATCCTTTCCCCTCGCGTCTGAACTTGTTGTCACTCCT
TTTGGGCAGATGACGTCGCTCGTGTCATGGCCGCGGCGGCAAACACCGAT
GCTGGCATGGATGGCCGAGTGTCTTTCGACCAGTTTATCCGCCTCTTGGA
GCAGGCGGGGCCAGCGGGGCCGCTAGAGGGGCCTGATCCGAAGGTGTTTC
ACACGACCGGGTCCCAACAGCATTTGGCTGAAGTTTTGAAACGAATGTAC
GGGTTCACTCGAGGGGACTTGCCTGACGGGTGATTTCGTCTGACGGCTGA
ATTCCCTTGAGGGTAAAGTTGTCTGTGGTCTTGGCAGTGTTTAAATGTTA
GACTGCATAATGGACTGCATGCTGGTGGAAAGAGCAACGGCTTGGAAACC
CCATCTTCCCGAATGGATGGGTTTCATTTCGACGCAGTGGCCCTTCGCCA
CACCCACGCCATCTCATCCCTTCCTCGAATATTTTGCCACAATACACGAC
ATGAACCGGCAGGTCATGGAGTTCTTGCGTATTTTGGAGGAGTACCGGGT
GAAGTGTGAAGAGGGCGGGGACTACCTCGAGGCGGGGAGGGCGCAGCGGC
AGCTGAATGTGCTCCGTCGACAAGAAACGAGACGGCAGCAGAAGGCCGTG
CGGGCGAGGCAATTGTGCGAGAGGCAGGATGTTCAGGTGCGGAGGGAAGA
ACTGCCAATTTTGCTTTTGAACCTCGGTTTAGGTGTATGTGCAAGGTCTA
CTGCAGCTTCGGTATCTAGTAAAAAATAAAGGCTGTGTCTGGGTTTTTCA
GCACCTTCCAAAAACTAAGCAAACATGGATCCTCGATAGTCGGCCGAACA
TCGCCGAACATCTCCAACGCAAGAGTTGCGAGTCGATACGTACCTCAACA
ACGACGCTGACCCAACCAACCAAAATGCCTACAAACCACAGTCAACCTTG
ATCTATGCCCTGGCCATCCTTACCCCCTACCTTGAACCCCCCTCTTCCCT
GTGAGCATGATAGTATCTGTACGATGCGTGCAGTCTGGAGATACAGAAAG
GATAATGTTTGACTTCTGTTCTGACAGTACCAGCTCAAGTATTTTACCAT
TGCCCCCCACACTCGAGACTCTGATCAACAACACGAAGATATGGCGCCAT
CCAACGCTGCGCCTCAAATTTACTCCCTTTGCTCCCCGTTCTGGTAGCCG
TTTAGAGACCCCGAGAAGCATGAAACAGACACCCGGTGGAGCGTGTTAAC
CCTCAGAGTACCTTGAAACACCGTTTCTTATACTTATTGAAGCACCCCTC
CTTGCCATTTTGAAAGTACACGTTGGGATTCTTTCGTAAGCAGGGAGGGG
CTGATCGACCTCCCCCTCCAGCACTGAAGGCTCTTGACCCTCTTTGATTG
GTCTCCTTGAACAGGTAGCCCACAACATGCAGTTTCAGGACTTCAACGCG
GCGTGGAATAAGTACCTGGAAGAGTACGACCGCATGGCGCAGATGTACGT
GCAGCAAATGACAGAGAGACACGCCGTCGGCCTTATGGAACACCAGAGGA
AGCTGCAGCAGGAGCTCCGGGACAAGCCGCCGAAATGGTCAAAGGTGACA
CGATCAACGATATTTGAAAGAAGGCAACCGTACCATTCATTCATTCGTCA
TGTGAGAAAAAAAATAAAGTAAATCTGACCTGCTTACTCAGCCGCTGGAG
TCCGCACGACGTGTTCGTCGGAGCATGATGAACCCCACCGCTGTGTACGA
TCGCACACCATACATACGCCTTCCAGCGTACCAGATCTGTCCCAACATTG
TTGAAGCCTAGGCTGACACAATACAATAAATAATCGATATACATACATGT
AGTTTCTCGACATCACCGCTCCAGAAACATTCGTTATCGGTCCCACCATG
GGCCTCGGCCTCGACTCAATCAATCCGTCGGTCGTTCAACCCGGATCAAG
TTTCCCCGGCTTCGTACTCAAGGTTACCGTAAGCTCTTACTACATAGATC
ATAGATGGATATTTTTCGAAAAAATATATAGGAAGGGCGGATTTACCTGC
TGCTACACAACTGCGGCCAACCTTATGCTACTCTGCTTCCACGCCTGTTG
CACGAAACGATGGCTGTATGCATAGTAGTAGTATTTACTATAAGCAAGAT
AATGTAAGACAACAGCGAAGCTTTCCCTTAACATCCATTGCGATGATGTT
GTCTAATTTAAAATTGTGAAATTTTGTCGAATACAGGGCAACTTTCGCGC
AGACCAAAATACTCGCGTTTTTAAGCCTCTCGTCCAGTGTTAGGAACAAA
ATCCGGCACGTCGCAAACTGTACACACACCTTCTCGGCCTTTTGGCTTAG
ATCATGTATGTGTAGTTTCTGTTCTAATCAGTTATAAAATTGATTGACGT
TCAATGAGCGTCATTTTCACACACACACACCTGTTTTTGAAATCGCCGGG
TTCGCACTGCTTGCAGTGTTCCAGCAGGATTTCCTCGGCATGCCACATTA
TTATTGATTGATTGATTGCCACCGCCGCCGTGTGAGGTCCGTCCCCTCGG
GGTGACACCAAAAAGGAACAAATAAACAACACCCATCAACCTAAACCCAA
ACGAACACCGCCAATGCCGCACGAGCAAACGCACCTGACCTAATTATTTC
TTTCCTTGCATACGACGGCGGCGGTGTGCACACCACTTATTATACTATAT
TCTGCATACATTAATAATACAATCAACGGAATCTTCTCCGTCCGTGTGTT
CGTTTAGGTGAGTATTGAGTTTGTAGTACATTAATTGTGTTTATCTATCA
CATCCACGATGTATGCTCGTTGCTTGTGCACGTGGGGGTTGGTATAATAG
TGGGGTGGTGGTGGTTGTACGATGTGTGTTTGGTTATTGCATTGAATACT
GTGTGTTATTGTGTGTGTGTTTGTTGGTGGGAGGGTCGCAAGCGAACACC
TCCCCGGAAAAAAATTATGCGGTAGAGATACCCCCGAAGGAATATTCTCC
AGGGATTACAGCACTCCAGGGTCCGGCCCAGTGCAAGAGCCTGCTCCCCC
TGGGGTCACCAGTCATCTTGACCACTGGCAAGCCCCCGCCAGGTAAGTAT
GATAAGGCAAGAGAGGGGCGGGGTCCTTTATATATAGTCAACCGCCCTAA
ACTCACCAATTTGTTCTGCGCCAACATGAAAAAATCGCTGTTTTTTTGCC
TGTTTCTTTCGTGCATCGTGGATGGGGTGATCGAATAATCAAGTCATCCA
TCAAGGACACGTTCCTCTTTGGGGATACTTGGGTACAATGCACTTAAGGT
GGACTACAGCAGTAGGTCAGCCTCCGGGGGTGGCGGCTCTCGGTACCCAA
CCTCTACATCATCAGCAGCAGTAGCTGGTACACACCAGCAGCTCCTCTGT
ACATCTTCGAAGATAAAGTGCAGCCCCTCTACGGAGATGCTCATACAACT
CATGCAGCAACGAACCGGTCAGTCAGCCGGTGTGCCGGTCGCCGGTCGCT
GTTGGCACACCCACTCTACGTTCTACAGGAGATGCCTCAGCTTTGTGGCC
CACTTGAATGGTGTGGAAACATTTTTGTCGAACAGTTGTGCAGTGGGTGG
AGAATCCAGGGCGAGCATTGCTGATATTCCAACCTTTCCCTCCGCTGCTG
CATGTACGCATGTACGCATCACACAACAGGAACTGCTCGAGTGGAGACGC
AGGCAACATATATTGGCACGCCAGAAGAACTACGCGGAGGCACAAAAGGC
GAGTACACATGGCGCATGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig72:218948..224416+

>mRNA_E-siliculosus-1a_M_contig72.15370.1 ID=mRNA_E-siliculosus-1a_M_contig72.15370.1|Name=mRNA_E-siliculosus-1a_M_contig72.15370.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1734bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:218948..224416+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGATCTCGCTGCCACTGATTCGCACGGAGGAGGCAGCGGCGGCGGCAT
AAACACCGACAACGGGGGCACACCTGCGATGACGGGAAGTGGGGAACACC
AGCGTACGTCGGCATCGACGGGAGCAGCGGCCGGGGGAATGCAACCACAA
GCTGGAGGGCAAGGAGTGTACGGGAGGGAGGAAGTTTCAGCCCTGAAAGG
AATTTTCAACCTTTATGACGCCGAGAACACAGGGACGATAGGGGTGAAGG
AGCTCGAGGGCATCCTTCAGAAAGTGGGACATAATCCTGATGGATCTCGC
TGCCACTGATTCGCACGGAGGAGGCAGCGGCGGCGGCATAAACACCGACA
ACGGGGGCACACCTGCGATGACGGGAAGTGGGGAACACCAGCGTACGTCG
GCATCGACGGGAGCAGCGGCCGGGGGAATGCAACCACAAGCTGGAGGGCA
AGGAGTGTACGGGAGGGAGGAAGTTTCAGCCCTGAAAGGAATTTTCAACC
TTTATGACGCCGAGAACACAGGGACGATAGGGGTGAAGGAGCTCGAGGGC
ATCCTTCAGAAAGTGGGACATAATCCTGATGACGTCGCTCGTGTCATGGC
CGCGGCGGCAAACACCGATGCTGGCATGGATGGCCGAGTGTCTTTCGACC
AGTTTATCCGCCTCTTGGAGCAGGCGGGGCCAGCGGGGCCGCTAGAGGGG
CCTGATCCGAAGATGACGTCGCTCGTGTCATGGCCGCGGCGGCAAACACC
GATGCTGGCATGGATGGCCGAGTGTCTTTCGACCAGTTTATCCGCCTCTT
GGAGCAGGCGGGGCCAGCGGGGCCGCTAGAGGGGCCTGATCCGAAGGTCA
TGGAGTTCTTGCGTATTTTGGAGGAGTACCGGGTGAAGTGTGAAGAGGGC
GGGGACTACCTCGAGGCGGGGAGGGCGCAGCGGCAGCTGAATGTGCTCCG
TCGACAAGAAACGAGACGGCAGCAGAAGGCCGTGCGGGCGAGGCAATTGT
GCGAGAGGCAGGATGTTCAGGTCATGGAGTTCTTGCGTATTTTGGAGGAG
TACCGGGTGAAGTGTGAAGAGGGCGGGGACTACCTCGAGGCGGGGAGGGC
GCAGCGGCAGCTGAATGTGCTCCGTCGACAAGAAACGAGACGGCAGCAGA
AGGCCGTGCGGGCGAGGCAATTGTGCGAGAGGCAGGATGTTCAGGTAGCC
CACAACATGCAGTTTCAGGACTTCAACGCGGCGTGGAATAAGTACCTGGA
AGAGTACGACCGCATGGCGCAGATGTACGTGCAGCAAATGACAGAGAGAC
ACGCCGTCGGCCTTATGGAACACCAGAGGAAGCTGCAGCAGGAGCTCCGG
GACAAGCCGCCGAAATGGTCAAAGGTAGCCCACAACATGCAGTTTCAGGA
CTTCAACGCGGCGTGGAATAAGTACCTGGAAGAGTACGACCGCATGGCGC
AGATGTACGTGCAGCAAATGACAGAGAGACACGCCGTCGGCCTTATGGAA
CACCAGAGGAAGCTGCAGCAGGAGCTCCGGGACAAGCCGCCGAAATGGTC
AAAGGAACTGCTCGAGTGGAGACGCAGGCAACATATATTGGCACGCCAGA
AGAACTACGCGGAGGCACAAAAGGCGAGTACACATGGCGCATGAGAACTG
CTCGAGTGGAGACGCAGGCAACATATATTGGCACGCCAGAAGAACTACGC
GGAGGCACAAAAGGCGAGTACACATGGCGCATGA
back to top