mRNA_E-siliculosus-1a_M_contig72.15367.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15367.1
Unique NamemRNA_E-siliculosus-1a_M_contig72.15367.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: D8LIG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG1_ECTSI)

HSP 1 Score: 637 bits (1644), Expect = 6.870e-223
Identity = 357/378 (94.44%), Postives = 361/378 (95.50%), Query Frame = 1 
Query:    1 MSVRNPIWRSRPQYSGMTSGVGSERKQYEQRTAAAATDLEEGLGARSRTSSGSXXXXTSQRRWRGGVRVERGSLQRRLSSTALGQQGGWAARAKGLLGGVGALFCSPRADGDGSGDSDEEQAIEEALERKLQEAIAVGAAAEEAEGGVLGGAGASGRDGGGGVVDMTAAGRGGAVDVPPGISWAALVAVAATQLGFVGLFVWVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ 1134
            MSVRNPIWRSRPQYSGMTSGVGSERKQ  Q+TAAAATDLEEGLGARSRTSS  XXXX  +RRWRGGVRVERGSLQRRLSSTALGQQGGWAARAKGLLGGVGALFCSPRADGD SGDSDEEQAIEEA ERK+QEAIAVGAAAEEA GGVLGGAGASGRD    VVDMTA+GRGGAVDVPPGISW ALVAVAATQL FVGLFV VASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIV LSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ
Sbjct:    1 MSVRNPIWRSRPQYSGMTSGVGSERKQCGQQTAAAATDLEEGLGARSRTSSXXXXXXXXRRRWRGGVRVERGSLQRRLSSTALGQQGGWAARAKGLLGGVGALFCSPRADGDDSGDSDEEQAIEEAFERKIQEAIAVGAAAEEAGGGVLGGAGASGRDXXXXVVDMTASGRGGAVDVPPGISWVALVAVAATQLAFVGLFVLVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ 378
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 5.630e-50
Identity = 107/198 (54.04%), Postives = 129/198 (65.15%), Query Frame = 1 
Query:  538 GISWAALVAVAATQLGFVGLFVWVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVTAPKP 1131
            GI+W  LV     Q  F G+F  +A  AMR QV S+  V+     +G+ G +PL  YGL L+   +W WVRK    T    L+LFGSKRQ+ KV  V IPLSMLV   EEC FRG LPLILA  T LP AAIV LS    G LHA ++AYFL ATL+G+FFH L LSTGNIFVP+VAHAV++A ALV  H+K +  +P
Sbjct:  132 GINWRLLVEDILVQPLFFGIFAVLAKPAMRGQVKSSLSVTLHGACVGILGSLPLFAYGLFLETRRDWGWVRKAQATTERAVLKLFGSKRQVTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIKTSGGEP 329
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: A0A6H5JEH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH8_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 9.770e-41
Identity = 94/203 (46.31%), Postives = 136/203 (67.00%), Query Frame = 1 
Query:  532 PPGISWAALVAVAATQLGFVGLFVWVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDE-ATSEVA-LQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVTAPKPQ 1134
            P GI+W +++     Q+ F+G F W+A+ A+REQ+ S+ ++S     LG AG VP+  YGL L     W W+++ ++ A +++  L LFG +RQ+ +V  V +PL+MLV LCEEC +RG +PL+L AKTGLP+AA+V +SA   G+ HA T+   + A + GM+ H L LST +I VPIVAHAV+DAI  V  H+K TA +PQ
Sbjct:  141 PAGINWTSILLSVVDQVLFLGFFAWLATPAIREQLRSSFVLSFPGIGLGAAGAVPMFVYGLYLGT-QNWPWLKRHEQKAAADIKDLNLFGRRRQVARVAVVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGMYVHCLLLSTRSILVPIVAHAVFDAILFVVGHLKETA-RPQ 341
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: A0A6H5JG43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG43_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.080e-26
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:  844 MLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVTAPKP 1131
            M+V + EEC FRGFLPLILA  T LP AAIV LS    G LHA ++AYFL ATL+G+FFH L LSTGNI VP+VAHAV++A ALV  H+K +  +P
Sbjct:    1 MIVSVSEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNILVPMVAHAVHNAFALVHCHLKTSGGEP 96
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: A0A835ZC13_9STRA (CAAX protease self-immunity-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC13_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.340e-12
Identity = 58/143 (40.56%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:  676 GVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLV--GLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALV 1098
            GV G +P+ G   LL+  T+W WV++I E T    + L G  +  G + G+   L + +  G+ EE  FRG L   L  +  L   A VA SA +FG LHA T  Y + A ++G +F  L+L +GN+ VPIVAHAVYD  A++
Sbjct:   37 GVLGALPVAGVMALLEI-TQWGWVQRISERTRTFLITLLG--KDGGGIFGLFFALGVGIAAGVGEELMFRGLLQGGL--QRYLSTEAAVAASAVVFGLLHAVTPMYAVCAGITGAYFSLLWLWSGNLVVPIVAHAVYDIGAML 174
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: K0TIM6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIM6_THAOC)

HSP 1 Score: 79.0 bits (193), Expect = 5.380e-12
Identity = 53/153 (34.64%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:  652 VSPAATALGVAGMVPLLGYGLLLDRWTEWE-WVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYH 1107
            V+PAA   G+   VPL G   ++     +   ++ + +AT    L + G KR+LG      I L +  G+ EE  FRG    +L+ K G   +A+  +S  +FG LHA T  Y L A  + +FF  ++++TGN+ +P+VAH +YD  AL+  H
Sbjct:  195 VNPAAILQGLQYCVPLFGLAGIMRVIEPYSPALQGVTKATERTVLFVMGKKRRLGFALAFSILLGLCAGVGEELLFRGVFQTLLSTKLGSSNSAL-CISGVVFGLLHAVTPLYALLAGAASVFFGYIYITTGNLAIPMVAHTIYDVGALIWAH 346
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: A0A1F3ACK4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 TaxID=1797224 RepID=A0A1F3ACK4_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.500e-11
Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 1 
Query:  670 ALGVAGMVPLLGYGLLLDRW---TEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIA 1092
            A G+A ++PL     LL RW   T+W  + +   +  E     F +    G     ++ L+++ G+ EE  FRG L  I+  + G+  AA +A ++ IFG LHA TV Y + AT+ G +F  LFL+TG++  PIVAHAVYD IA
Sbjct:   60 AFGLAAVMPLA----LLLRWFMKTKWRPLAEFRASQLE-----FFAGIGFGLTRPRIVTLAIIAGVSEELMFRGVLQEIIDRRFGI--AAAIAATSMIFGLLHARTVLYAVIATMVGAYFSLLFLATGSLIAPIVAHAVYDFIA 192
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: A0A5Q4GZ09_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Wenzhouxiangella sp. TaxID=1979961 RepID=A0A5Q4GZ09_9GAMM)

HSP 1 Score: 73.2 bits (178), Expect = 4.430e-11
Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 1 
Query:  679 VAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHV 1110
            V G +PLL  G  L R + W W+R++     E+   LF          G V  +++L G+ EE  FRG +   L+   G P  A++A S  +FG++HA T AYF+ AT+ G++   ++L TGN+ +PI+ H +YD + L RY++
Sbjct:   55 VLGTLPLLLAGWWLFR-SSWAWMRELKRLVQEMVTLLFRDAPP-----GTVFLVALLAGVGEELLFRGVVQGGLSGLIG-PWGALLAAS-LLFGAMHALTRAYFVVATIMGLYLGLIYLWTGNLLIPILIHFLYDWVVL-RYYL 189
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: A0A2D7HDS7_9BACT (CPBP family intramembrane metalloprotease n=3 Tax=Planctomycetia TaxID=203683 RepID=A0A2D7HDS7_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 6.390e-10
Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 1 
Query:  673 LGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILA-----------AKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALV 1098
            +G     P+L +  ++ R   WE +R+++  T +  L+     R L      +I +S+  G+ EE  FRG+L   LA           A + L M   +  S+ +FG  H  T  Y + A L G++F GL L TGN+ VPI AHA YDA+ L+
Sbjct:   63 IGCVAAAPILLFVEIIRR-IPWEPIRELERLTDDGMLRSLLQLRPLE-----LIMVSLCAGIGEELLFRGWLMYWLANLIGLAEFSGGATSSLAMGIALVTSSLVFGFFHPITKLYIILAALMGLYFGGLLLYTGNLLVPIAAHATYDAVQLI 209
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Match: A0A6C1RG60_9SPIO (CPBP family intramembrane metalloprotease n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1RG60_9SPIO)

HSP 1 Score: 66.6 bits (161), Expect = 8.230e-9
Identity = 57/164 (34.76%), Postives = 90/164 (54.88%), Query Frame = 1 
Query:  610 ASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVR 1101
            A+A +R  +    +VSPA+ A G+   VPLL +       T W  +R+I +    +   L     QL  +  +++ L+   G+ EE  FRG +   L A  G P+ A++  SA +FG++H  T AY + A L G++F  L L T ++  PIVAHA+YD +AL++
Sbjct:   26 AAALLRLPLSGMFVVSPASVAGGILATVPLLLF-FRFSLGTAWSPLRRIRQLLLRLLRPLL---HQLDVLRALLLGLA--AGIGEELLFRGLIQTGLTALIG-PLPALLTASA-LFGAVHWITNAYAVIAALLGVYFGLLLLLTESLVAPIVAHALYDTVALLQ 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIG1_ECTSI6.870e-22394.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIG3_ECTSI5.630e-5054.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEH8_9PHAE9.770e-4146.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG43_9PHAE9.080e-2662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC13_9STRA1.340e-1240.56CAAX protease self-immunity-domain-containing prot... [more]
K0TIM6_THAOC5.380e-1234.64Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1F3ACK4_9PROT1.500e-1138.89Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A5Q4GZ09_9GAMM4.430e-1136.11CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A0A2D7HDS7_9BACT6.390e-1033.33CPBP family intramembrane metalloprotease n=3 Tax=... [more]
A0A6C1RG60_9SPIO8.230e-934.76CPBP family intramembrane metalloprotease n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:180646..187330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1137
Model size2285
Exons7
Ec32 orthologEc-18_003810.1
Ec32 ortholog descriptionCAAX amino terminal protease
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelBacillariophyta
COG Functional cat.S
EggNOG OGs2E4JX@1,2SBFQ@2759,2XCVU@2836
EggNOG free text desc.CAAX protease self-immunity
Seed eggNOG ortholog159749.K0TIM6
Seed ortholog evalue1.2e-11
Seed ortholog score77.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15367.1prot_E-siliculosus-1a_M_contig72.15367.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig72 180646..186105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935983.3255327-CDS-E-siliculosus-1a_M_contig72:180645..1806651622935983.3255327-CDS-E-siliculosus-1a_M_contig72:180645..180665Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 180646..180665 +
1696250876.8823066-CDS-E-siliculosus-1a_M_contig72:180645..1806651696250876.8823066-CDS-E-siliculosus-1a_M_contig72:180645..180665Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 180646..180665 +
1622935983.38527-CDS-E-siliculosus-1a_M_contig72:182668..1832731622935983.38527-CDS-E-siliculosus-1a_M_contig72:182668..183273Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 182669..183273 +
1696250876.8943057-CDS-E-siliculosus-1a_M_contig72:182668..1832731696250876.8943057-CDS-E-siliculosus-1a_M_contig72:182668..183273Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 182669..183273 +
1622935983.403299-CDS-E-siliculosus-1a_M_contig72:183747..1839291622935983.403299-CDS-E-siliculosus-1a_M_contig72:183747..183929Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 183748..183929 +
1696250876.90532-CDS-E-siliculosus-1a_M_contig72:183747..1839291696250876.90532-CDS-E-siliculosus-1a_M_contig72:183747..183929Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 183748..183929 +
1622935983.4223344-CDS-E-siliculosus-1a_M_contig72:184710..1848631622935983.4223344-CDS-E-siliculosus-1a_M_contig72:184710..184863Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 184711..184863 +
1696250876.9192085-CDS-E-siliculosus-1a_M_contig72:184710..1848631696250876.9192085-CDS-E-siliculosus-1a_M_contig72:184710..184863Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 184711..184863 +
1622935983.4827008-CDS-E-siliculosus-1a_M_contig72:185493..1856461622935983.4827008-CDS-E-siliculosus-1a_M_contig72:185493..185646Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 185494..185646 +
1696250876.9312913-CDS-E-siliculosus-1a_M_contig72:185493..1856461696250876.9312913-CDS-E-siliculosus-1a_M_contig72:185493..185646Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 185494..185646 +
1622935983.5118804-CDS-E-siliculosus-1a_M_contig72:186081..1861051622935983.5118804-CDS-E-siliculosus-1a_M_contig72:186081..186105Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 186082..186105 +
1696250876.9428027-CDS-E-siliculosus-1a_M_contig72:186081..1861051696250876.9428027-CDS-E-siliculosus-1a_M_contig72:186081..186105Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 186082..186105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935983.5349405-UTR-E-siliculosus-1a_M_contig72:186105..1868121622935983.5349405-UTR-E-siliculosus-1a_M_contig72:186105..186812Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 186106..186812 +
1696250876.9571025-UTR-E-siliculosus-1a_M_contig72:186105..1868121696250876.9571025-UTR-E-siliculosus-1a_M_contig72:186105..186812Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 186106..186812 +
1622935983.5517557-UTR-E-siliculosus-1a_M_contig72:186889..1873301622935983.5517557-UTR-E-siliculosus-1a_M_contig72:186889..187330Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 186890..187330 +
1696250876.9667757-UTR-E-siliculosus-1a_M_contig72:186889..1873301696250876.9667757-UTR-E-siliculosus-1a_M_contig72:186889..187330Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig72 186890..187330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig72.15367.1

>prot_E-siliculosus-1a_M_contig72.15367.1 ID=prot_E-siliculosus-1a_M_contig72.15367.1|Name=mRNA_E-siliculosus-1a_M_contig72.15367.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=379bp
MSVRNPIWRSRPQYSGMTSGVGSERKQYEQRTAAAATDLEEGLGARSRTS
SGSSSSSTSQRRWRGGVRVERGSLQRRLSSTALGQQGGWAARAKGLLGGV
GALFCSPRADGDGSGDSDEEQAIEEALERKLQEAIAVGAAAEEAEGGVLG
GAGASGRDGGGGVVDMTAAGRGGAVDVPPGISWAALVAVAATQLGFVGLF
VWVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVR
KIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLIL
AAKTGLPMAAIVALSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNI
FVPIVAHAVYDAIALVRYHVKVTAPKPQ*
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mRNA from alignment at E-siliculosus-1a_M_contig72:180646..187330+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig72.15367.1 ID=mRNA_E-siliculosus-1a_M_contig72.15367.1|Name=mRNA_E-siliculosus-1a_M_contig72.15367.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6685bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:180646..187330+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCGTCAGGAATCCGATGTGAGCTCACCTGCGTACTCAAGGGCGTAG
GAGTCCTGAGTCTCGGCATCCGGGTGTTCGGTTGTCTGTGTGCCGATAGT
GTCGGGGTAAAGGTCGGGCGGTTAGACACAATACCAATCTCGTTCGTCGA
AAGGGTCTCTCCTTTGTCTCGACGTGCACCGTCGACGGAGAGAGCGAATT
GCCGCATGTTGCATAAGATACCACACCCCCCCAGCACCGATTTTTTTCTC
TCGATTGCTCCAACGAAGAGGATACCAAACGGCAAGATCTCGACGAGACG
GTTCGAACGGCACCATCGGCACAGCAGTCGCGATTTTTGCTGCAGAGTAA
ACCGGTGCGGTGCCACTTCTATCTAAAATGCGACCTATAACGGCACGGAG
TTGGGGCCCATCCGGCAAGGTTGGGTCGAGGGTCACGTGTGTTATATTGT
TTGTTTGTCGAGCATGACAGCATGTACATGTAACATCCATCTCTTTTAAC
CTTGCGTTCCTCGAACAAAACTTGTGACTATTCGTAGTGGACCCGGGCCA
ATATCTCTTCGCTGTCTGTCTTTTTGTAGAGAAACCATGCATACATCCAA
TCAGAGAAAGAGTAACCGTTCGCGACAATGCCCCAATCGATGTGATGTGT
CGAGGTCTCTTCATAGGCTGAGGATGAGTCTTGCACTTCGAGCCTCACCT
GTCAGGTACACTCGCCGTTTTCACGTGCACACACGGTGATGTTCCCTTGA
AGCCACTATATAGGTCATTACACCAAGCACGCCGGCTCTGTAAAGACCAA
CGATGCTATCTCACCTTGAGGATTTACGGAGAAAGAGATGTCCACCTGTC
CACTGAAATAGATAATAGGTCAGACGGCACCTTTTTGATCAAAGAGGCGG
CAGAAAAAACTACAACCTCCAACGGGGCACAGACATTCCGTGCAACGCTG
GGAGGTTTTCAGCCCCCCTCCGCCCCACCTTACGCCGACAGAGTACGCGT
TGCGCAGGCTCAGGTTTGGTGAAAGAGTCATTTCTCAAAGGGAACAGCCA
CGGGCCCATGGCCGAGTGAAGTCAACCTGTCCGAGGGGGTGGTTTCGTCC
GCTGTGATAGATTTGTCCTCCGCCAAACGCGGCTTCGATCCGACGTTTTC
TTTTCGTTCTCGATCTGCCCAACAGGAGTAGGTCCCCGTCAAAGAGCGCT
CTTATTATGACCTTTTTTTGTGTGTTTTTTCGTCTCTGCATGTTTTTGGC
TATTTGCTCCTCTCCGGTAGACTTTTGCGATCATACGTTTCTCCCAGAAA
CTGTTTACCTGTACCCCTTTGATCCGTCCACGAAACAGGACGCGTCTCCC
GGCCTTGTTATCGCCTGTCATCGACATCGCGCCTCGAATATCTACCATCA
CTACCCCGCACCCGTGGCCACGAGCCGGGAACAAGAACGTTCTATGAAAA
GGAGTATGAAAGTGCTCTAACCCTCCTATTATAGTACTGGAAGCCCAAAT
GGGAACACTCTGGGGACACAGCATTCAAATGTCTATTTACCGCACCGTAG
TCGCCCTAGGGCCCGATTTGTGAAACGCACGTGAGAACCGTTGCTCTATC
ATGCTTGGGTGAGGTGGTACGCTGTGTGATATGCTGCGTGATGCCTCCTA
GGCCTTTGACTTGCTGCACACAATCTCTCAAGCCGCGTGTCCCCTAGGTC
GTACAACTGTACGCCGCCTGGCACGGGAAAAATTTGCTGACTTGACTTCA
GTATCAAAAGTGTCCCCACGCGTTTTGGGGACTCTTTTCATGCTGAAGCC
AAGTCACCCTTCGTCTCGGCACTCTCCGATTTCTTTGGAGGGCCGGTAGC
CCCTCGGCCAATGACAAGACATTTTGCGACATTTTTTTTGCGGAGGGACT
ACGTACGAGGAAGGTTACATAGAAAATGATTTGTTTCGCCGGGAATGCAG
GAGCATTTCACAAAACAACTCACACATTCAATTCGTGTACGTGCCAAACT
TGCTTGCGGTCCAAACAACGCAGCTGGAGGTCTCGTCCCCAATACTCAGG
CATGACATCCGGGGTTGGTTCCGAGCGAAAGCAGTACGAACAGCGGACCG
CCGCCGCTGCCACAGATCTAGAGGAAGGCCTGGGTGCCCGTAGCAGGACC
AGCAGCGGCAGCAGTAGCAGCAGCACCTCGCAACGGAGGTGGCGAGGGGG
AGTGAGAGTAGAGAGGGGAAGCCTCCAGCGCCGGCTCTCCAGCACCGCTC
TTGGCCAGCAGGGGGGCTGGGCCGCCCGCGCGAAGGGCCTCCTGGGCGGC
GTGGGGGCCTTGTTTTGTTCGCCGCGGGCCGACGGTGACGGCAGCGGCGA
TAGCGACGAGGAACAGGCCATCGAGGAAGCCTTGGAGCGAAAGCTCCAGG
AGGCGATAGCCGTCGGAGCGGCAGCGGAGGAGGCAGAAGGCGGCGTTTTG
GGCGGCGCCGGTGCGAGCGGGAGAGACGGCGGCGGCGGCGTCGTTGACAT
GACCGCTGCCGGGAGGGGGGGTGCGGTCGACGTGCCGCCGGGGATCAGCT
GGGCCGCGCTGGTGGCGGTGGCGGCGACTCAGCTGGGGTTTGTCGGTCTC
TTCGTCTGGGTAGCTTCGGCGGCGATGCGTGAGTAGCGCAAGAGCTGTGC
GAGTCCGTGGCGACATTCATGCATGTTGTCATCAGTTGAGCAAGTTTCGC
ACCGAACGGTGAAACCGCCAGCTAGTTGTTTGGACGTCGTCCGTGCTCGT
GATCCATGATAGAAAAGCCACGCCTATGTAAGTATGCTCCTGTCCGTCAT
CATCCTCTCCTAATTTTATTGCGGTGCAACACGGGATACCTACGCCGTGC
TTCCCAAGTCTCTCGCTCCTCCCCAATGCCAAACATATGCTGGCGTTGCC
TTCGACGCGGTGTCGTTATTTCGCGCCATTCCCGCGATATTGCGGAGCCC
CCGCACTACTCTCGTCGAGTTGGGGAATAAAAAATCGACTTCACTATTGC
ACTATCGCCAAACCCGAGCCAACCGCGCCGCATCGAGACCCCCTCAATAT
TCCGGAACGCACTACTGCGGGGCCCCTGATGCATTATTGTGTGTGTATGC
AGGCGAGCAGGTAGTTTCGGCCTGTATGGTGAGCCCCGCCGCCACCGCTT
TGGGGGTGGCGGGCATGGTGCCGCTGCTCGGGTACGGACTGCTGCTAGAC
AGGTGGACAGAGTGGGAGTGGGTGAGGAAGATCGACGAGGCAACCTCCGA
GGTCGCGCTTCAGCTGTTCGGCAGCAAGAGACAGGTGATTTTTTGATTTT
TTTATGTCCGCTGTGCGTATTTATTTCGTTTTTTTTTAGGGTGAAACGGC
GAAGTGGGGGGGGGGGGGCGCGGCGTGTAACGAAGACGATCCTGGAATTG
ATGAAATATCCGGATGAAAGGAAACGGAGCCCATCGCTCTGGCTCAGAGT
CTTTACGACCTTTTTTGTCTATGGCTACCTTCCTCTTATATATCCCGGGT
TGGTGCGTCAAACATGTACCGTGAGGTGTAGCCTGGTGCCCAGAATACAT
GGAACGAGAGCCCACACACACACATGTCTGCAAATGAGCGCAGGTGTTGT
TGTCGCGGAAAAGGCGAATGAGTAACATTTCTAGCGGTTAAGCTCAAGGT
GTGCACAGCACGAGGGAATACGGTGACGGGCCCGAATTCGCTCGACGCCC
AAGCATTAGCGGGCAGGTTGGTGAACTTCAGCTATGTTTGGGGCCGCTTC
CCAGGGTTCTACCCCAAGTAGGCCGTTTGCTGCTTGCTGTGACGGTGGTA
CTACGACTACCAACTGGTGTGATGGTGCGGAGGAGGCGCACGCACGCCAA
GAGGCACTGGCTTGCAAAAGCTTACGCTTTCCGTTAGCTTTGACCGGCAA
GGTCAAGACAAGGTGTTTCGTTCTTGTTGCTTCGTGTTGTTTGCTCGGAG
TCACCTTGCGTCATGGTGTAATCACGTTCAAAATGGGGTTCACATTCATC
GTCATGGCGTATGATGAGGTCACCGACACACGACGACCCTTGCTTTTCGC
AACCGAATCGGTCAGCTGGGCAAGGTAACCGGGGTCGTGATCCCCCTGTC
GATGCTCGTCGGTCTGTGCGAGGAGTGCGCGTTCCGAGGGTTCCTGCCCC
TCATACTCGCGGCCAAGACAGGGCTACCGATGGCAGCCATCGTCGCCCTC
TCCGCGACAATCTTCGGGGTGAGCTGTCTGTGTTTGTGTTGCTTGCACGT
GTTCCGGTTGCAAATAGAAGAAACAATATGAAGATTACTTGGGGCTCCTT
CATGGTTCACCAAAACCGCGTTTTATTGGTGCACTTAAAACGCGAATGGA
AGGGAGGGGCGCTGAGCAGCGGGGCACCGCGAATGGTGATTTATCAGGGG
CGCGCGGGGAAGCTGCTGCCGCCGTTTTGGTTCTGCCATATTTTGACTGA
TTGTGGGCTTTCCGTATGTCGACATTGTGTTTCACAGATCGCATTTTGGT
GCGAGTTTTACGTCTTGGTGTGTACTTTTTTCGGAAGGGAGAGCGTCTGT
CGCATCTCTGTACGGGACCAAGAGGTATGACCTTCGGTGGGAGGCACGGC
AGTTTTTTCGTCATTTTTCCGCTTTTGGGGTGAACGGGACATCTTTTTGT
CGGGTTTAACTTGAAATCACACAGCTCGCTGAGACTACGGACTGCTGCAC
GTACTCGATTGAACGTCTTTCTCCTGCATCACCCCCGCTTTCCAGTGTTT
CTCGACAACCTCAACCCCCCCCCAGATCTCAAGCCCCACCCCTCGGTGCC
CCCTTGTGTACCGCTTGTCGCATTTCTGTTGTATTTACTTTTTTATAGTC
CCTTCACGCTGCGACCGTTGCGTACTTCCTCACCGCCACCCTGAGCGGAA
TGTTCTTCCATGGCCTTTTCCTTTCTACGGGAAACATTTTCGTGCCGATC
GTGGCCCACGCCGTGTACGACGCGATCGCTCTCGTGCGTTACCACGTCAA
GGTACGCTGCTTGCTGTACGGCTAATAGTGCGCATGATTTTGGTATCGAT
GATATATGCACAATGTATGTGTGTGTTTCCGCTTGTCATACAACTCGGAA
GCCTTCGATTATGGAACACATGCGCAGAGCGCCAGGAGCTTTTCGCAAGT
CAACCACGAGTTTTGCTTCTTGGGGGCCGAGGAGGGAACCTCCCTTCTTT
GTATTTCCTGCGTTCAACTCCCCCCACCCTGTTACTGGTTCGCTCAGCTG
TTTCTCTCGCCAACTTTATGGTTTCCCGGAATAACTCCGCACCGCTCTGC
GCCGATCTTCACTCTCCGTCCGACTCTCTCATATCTCACCGTGGCTGCTT
GCCTCATTTGGTTGGATTCTTACCTGATGCTGCTGTGGTTGCTGCCGTTG
TTACTGCAATTGTTCATTACTTGGTCGTCGGTTCAGGTAACTGCGCCAAA
ACCGCAGTGATGAGATGGGCGCATCCCGAGGACAGGGCAACGCAAACGTG
CGTTCTTCTACGCTTTGACGGTTGCACGCACCTAACGGTGTCCTGCTTTC
CCTTGGTAGTAGATGACGGCCGTTGTTTTCGCATCCGTAGTTAGCAACCG
CTCTGACCTCTACCCAGCACCGCCTCTTCCGTACTTTTGAAAGGAAGGGC
ACGATCTTCGTAGCCACAAGCTGACAAAAATAACGCAAAACAAGCCAAGG
GGCGTGCCCCGGAAATCAGGAAGCCAGGTTTTCGAACGGGTGTGGGGAGA
GGGCGTTCGTTCCTCGCTTGTTAGTGTTGCCCGACGACGTGTCGCGGTCG
GAGACGGAGCACACTGCCGTCCCCACGTCTTACGAGACAAGAGAGTGTTG
TTTTGTTTTCGATCCGACAATGTGTCGGGGGTCAGAATAGGTATGTTTGG
ACGTGTGGCGCTCTTTACCCGTGGATGCACCGTAGGGGAGAGAACTGGTG
TTGATGTACAACCTCTTTTCGCGAGTCGAACTGAGGGCGATGTGTATGGA
CAAAGGTGCGATTCTGATGCCTGGGGAGGTTTTGTTTGTTGTGCTGAGTG
GTCAGCGGCTGAAGCTCCAACCCTCACCGTGTCCTGTCTCACCCTACCCG
CCACGTCTTGGCTAAATAAATGGGGAGGGGCAGATTGTTCTTGGCAGCCT
AAGACAAGAGCGGAAGAGCCCCATCGCGTCGTCGTGCCCCCGGATGTACA
TCGAGGCAAGCAGTGTACACTACAGTATTAGCCCGGTTGTGGAGAAACCC
GGCGGTGGTATCCGGTGTCTCGACACTACAGAACGGGCCAGCAGATAAGA
AACTGTATCGGGCCGAGGCTCAAGTCTCTTATTTCGTCGCCACTGTCGAG
CACAGGCTGTTGTATAGAGGATAGTGTAGGGTCTACCGCTGAGGTGTGTT
TGTTAGACCTATTTCCTTTTTTTTCTTGAAAATGTGAGCCTCTATTGCTT
GTTGGGCCCGTTCTGTACAAGATCATGACCAAGAGGCTGGAAGACGTGAT
GGAGCGTATTAGGTACATCACTTCTCGTTCTGGTTCATAAACTATGTTGT
TTTTGGTGGGGTTGCCATCTTACAAAGTAAGGTCGACCACGAATCATTCT
CACCTAACCCTGCCAACGCACTGTCTTGTCATTTTTGTGACCATCTTTGG
CACACGTTGAAGCACGATTGCTCCGTTGTATGCAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig72:180646..187330+

>mRNA_E-siliculosus-1a_M_contig72.15367.1 ID=mRNA_E-siliculosus-1a_M_contig72.15367.1|Name=mRNA_E-siliculosus-1a_M_contig72.15367.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2274bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:180646..187330+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCGTCAGGAATCCGATATGTCCGTCAGGAATCCGATCTGGAGGTCT
CGTCCCCAATACTCAGGCATGACATCCGGGGTTGGTTCCGAGCGAAAGCA
GTACGAACAGCGGACCGCCGCCGCTGCCACAGATCTAGAGGAAGGCCTGG
GTGCCCGTAGCAGGACCAGCAGCGGCAGCAGTAGCAGCAGCACCTCGCAA
CGGAGGTGGCGAGGGGGAGTGAGAGTAGAGAGGGGAAGCCTCCAGCGCCG
GCTCTCCAGCACCGCTCTTGGCCAGCAGGGGGGCTGGGCCGCCCGCGCGA
AGGGCCTCCTGGGCGGCGTGGGGGCCTTGTTTTGTTCGCCGCGGGCCGAC
GGTGACGGCAGCGGCGATAGCGACGAGGAACAGGCCATCGAGGAAGCCTT
GGAGCGAAAGCTCCAGGAGGCGATAGCCGTCGGAGCGGCAGCGGAGGAGG
CAGAAGGCGGCGTTTTGGGCGGCGCCGGTGCGAGCGGGAGAGACGGCGGC
GGCGGCGTCGTTGACATGACCGCTGCCGGGAGGGGGGGTGCGGTCGACGT
GCCGCCGGGGATCAGCTGGGCCGCGCTGGTGGCGGTGGCGGCGACTCAGC
TGGGGTTTGTCGGTCTCTTCGTCTGGGTAGCTTCGGCGGCGATGCCTGGA
GGTCTCGTCCCCAATACTCAGGCATGACATCCGGGGTTGGTTCCGAGCGA
AAGCAGTACGAACAGCGGACCGCCGCCGCTGCCACAGATCTAGAGGAAGG
CCTGGGTGCCCGTAGCAGGACCAGCAGCGGCAGCAGTAGCAGCAGCACCT
CGCAACGGAGGTGGCGAGGGGGAGTGAGAGTAGAGAGGGGAAGCCTCCAG
CGCCGGCTCTCCAGCACCGCTCTTGGCCAGCAGGGGGGCTGGGCCGCCCG
CGCGAAGGGCCTCCTGGGCGGCGTGGGGGCCTTGTTTTGTTCGCCGCGGG
CCGACGGTGACGGCAGCGGCGATAGCGACGAGGAACAGGCCATCGAGGAA
GCCTTGGAGCGAAAGCTCCAGGAGGCGATAGCCGTCGGAGCGGCAGCGGA
GGAGGCAGAAGGCGGCGTTTTGGGCGGCGCCGGTGCGAGCGGGAGAGACG
GCGGCGGCGGCGTCGTTGACATGACCGCTGCCGGGAGGGGGGGTGCGGTC
GACGTGCCGCCGGGGATCAGCTGGGCCGCGCTGGTGGCGGTGGCGGCGAC
TCAGCTGGGGTTTGTCGGTCTCTTCGTCTGGGTAGCTTCGGCGGCGATGC
GCGAGCAGGTAGTTTCGGCCTGTATGGTGAGCCCCGCCGCCACCGCTTTG
GGGGTGGCGGGCATGGTGCCGCTGCTCGGGTACGGACTGCTGCTAGACAG
GTGGACAGAGTGGGAGTGGGTGAGGAAGATCGACGAGGCAACCTCCGAGG
TCGCGCTTCAGCTGTTCGGCAGCAAGAGACAGGCGAGCAGGTAGTTTCGG
CCTGTATGGTGAGCCCCGCCGCCACCGCTTTGGGGGTGGCGGGCATGGTG
CCGCTGCTCGGGTACGGACTGCTGCTAGACAGGTGGACAGAGTGGGAGTG
GGTGAGGAAGATCGACGAGGCAACCTCCGAGGTCGCGCTTCAGCTGTTCG
GCAGCAAGAGACAGCTGGGCAAGGTAACCGGGGTCGTGATCCCCCTGTCG
ATGCTCGTCGGTCTGTGCGAGGAGTGCGCGTTCCGAGGGTTCCTGCCCCT
CATACTCGCGGCCAAGACAGGGCTACCGATGGCAGCCATCGTCGCCCTCT
CCGCGACAATCTTCGGGCTGGGCAAGGTAACCGGGGTCGTGATCCCCCTG
TCGATGCTCGTCGGTCTGTGCGAGGAGTGCGCGTTCCGAGGGTTCCTGCC
CCTCATACTCGCGGCCAAGACAGGGCTACCGATGGCAGCCATCGTCGCCC
TCTCCGCGACAATCTTCGGGTCCCTTCACGCTGCGACCGTTGCGTACTTC
CTCACCGCCACCCTGAGCGGAATGTTCTTCCATGGCCTTTTCCTTTCTAC
GGGAAACATTTTCGTGCCGATCGTGGCCCACGCCGTGTACGACGCGATCG
CTCTCGTGCGTTACCACGTCAAGTCCCTTCACGCTGCGACCGTTGCGTAC
TTCCTCACCGCCACCCTGAGCGGAATGTTCTTCCATGGCCTTTTCCTTTC
TACGGGAAACATTTTCGTGCCGATCGTGGCCCACGCCGTGTACGACGCGA
TCGCTCTCGTGCGTTACCACGTCAAGGTAACTGCGCCAAAACCGCAGTGA
GTAACTGCGCCAAAACCGCAGTGA
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