mRNA_E-siliculosus-1a_M_contig71.15326.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig71.15326.1
Unique NamemRNA_E-siliculosus-1a_M_contig71.15326.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig71.15326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig71contigE-siliculosus-1a_M_contig71:776218..778893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size756
Model size759
Exons6
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig71.15326.1prot_E-siliculosus-1a_M_contig71.15326.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig71 776220..778893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935959.981642-CDS-E-siliculosus-1a_M_contig71:776219..7763871622935959.981642-CDS-E-siliculosus-1a_M_contig71:776219..776387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 776220..776387 -
1696250866.0836558-CDS-E-siliculosus-1a_M_contig71:776219..7763871696250866.0836558-CDS-E-siliculosus-1a_M_contig71:776219..776387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 776220..776387 -
1622935960.0000205-CDS-E-siliculosus-1a_M_contig71:776606..7767231622935960.0000205-CDS-E-siliculosus-1a_M_contig71:776606..776723Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 776607..776723 -
1696250866.101931-CDS-E-siliculosus-1a_M_contig71:776606..7767231696250866.101931-CDS-E-siliculosus-1a_M_contig71:776606..776723Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 776607..776723 -
1622935960.025488-CDS-E-siliculosus-1a_M_contig71:777088..7772171622935960.025488-CDS-E-siliculosus-1a_M_contig71:777088..777217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 777089..777217 -
1696250866.114791-CDS-E-siliculosus-1a_M_contig71:777088..7772171696250866.114791-CDS-E-siliculosus-1a_M_contig71:777088..777217Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 777089..777217 -
1622935960.0432894-CDS-E-siliculosus-1a_M_contig71:777427..7775741622935960.0432894-CDS-E-siliculosus-1a_M_contig71:777427..777574Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 777428..777574 -
1696250866.1248925-CDS-E-siliculosus-1a_M_contig71:777427..7775741696250866.1248925-CDS-E-siliculosus-1a_M_contig71:777427..777574Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 777428..777574 -
1622935960.057891-CDS-E-siliculosus-1a_M_contig71:777916..7780511622935960.057891-CDS-E-siliculosus-1a_M_contig71:777916..778051Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 777917..778051 -
1696250866.1353967-CDS-E-siliculosus-1a_M_contig71:777916..7780511696250866.1353967-CDS-E-siliculosus-1a_M_contig71:777916..778051Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 777917..778051 -
1622935960.0804677-CDS-E-siliculosus-1a_M_contig71:778833..7788931622935960.0804677-CDS-E-siliculosus-1a_M_contig71:778833..778893Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 778834..778893 -
1696250866.1443634-CDS-E-siliculosus-1a_M_contig71:778833..7788931696250866.1443634-CDS-E-siliculosus-1a_M_contig71:778833..778893Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig71 778834..778893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig71.15326.1

>prot_E-siliculosus-1a_M_contig71.15326.1 ID=prot_E-siliculosus-1a_M_contig71.15326.1|Name=mRNA_E-siliculosus-1a_M_contig71.15326.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=252bp
SKDVFDDTLVVLESRLTHEEVQRSMKVISQGPKRESIMMSAAGSGDKETW
NAVLAQLERSMSKTEVKKIMMGETEMYTYRIHDGTIFHPAIRSGSIAVFE
AVLAGVNQHLTPDERDLVMLLANRKNPSILHVAAEGGDKGMFEAVCAALK
DGPGSEELEKLVGSSLSFGRNILHFAASSGSKEMFEAVLAIVKEHQVKPM
MVPLVDSEEEHDAPDGRLGDVASVLHVAASSGSKAAFEAVLVALQQYLTP
DE
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mRNA from alignment at E-siliculosus-1a_M_contig71:776218..778893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig71.15326.1 ID=mRNA_E-siliculosus-1a_M_contig71.15326.1|Name=mRNA_E-siliculosus-1a_M_contig71.15326.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2676bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig71:776218..778893- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGCAAGGACGTGTTTGACGATACTCTAGTGGTTCTGGAGAGCCGGCTGAC
CCACGAGGAGGTACGGCACACCATCGCACCATAAGAGGGCAAAACCAAGC
GAATATCGAGCACTCACACACGAGACAGCACCAGACCAATTGCACGCGTT
GGGCACGAACGTATCCGTTGATGGCCACACGGAGCATCGCTAAAATATAA
GCTTGTCTTCACGTCCTGAGAAGGCCATCATGCGCAATCTAGTCCTTTTA
GGTGAAAACAGCCACAAATGGCGGGCTCGTATATTGAGGCCTACCTTGCG
GGAAGTCCTGACGTGAAGTGTGATTTCAGTAGAGGATGCTCTGTAGCATT
GACGCGTGTGTGTTGCCCCCGAAATCAGCTTGTTCGGTGATGTTGAGGGT
CGCACGTAGCAGCGGCCTAACAATTCCGCAAACTGTATTTTAGCTACGCC
CGTAAACATACCCTCAGTTGAGGAGATTGAGGTCCATGGCGGCGAGCCCA
GCGGTGACAGACGGTTGATTCCGGCCTATGCATTTCAGCTCCAGCTGCGA
ATGTAAGCGTGTGCAAACACACGTCGAAGTCTCCATGGTGTATTCTGCTG
ATGCCGCAATACGGGTCGGGACTCCGCGGGGCGCAAGGTGCTTTTCGTGA
TTTTTGTTTTGGCGCTGTTTCCGTCTTGGTTGTAGTGCAGAATACACGCC
GTCGCATGGCTCCGTGCAAACTACCATGTGATGTGGTGGGTTTTTAGACA
CGTTCCCAGGGGATGGGTGCCTCAGGGGTACGTGACGGTTATCGCAAACT
AATGCTTTTGGCGATCCTCTACCTCATCCTGTCCGCTGCCAGGTCCAAAG
GTCAATGAAAGTCATTAGCCAGGGGCCGAAGCGGGAGAGCATCATGATGT
CGGCGGCCGGCAGCGGAGATAAGGAGACATGGAATGCCGTGTTGGCACAG
CTTGAGAGGTCGATGAGTAAGACAGAGGTGATGATGGCCTGTTCATTCGT
TTGTGCCGGTCGGATATTGGTTTTCGCTTTCGAGTGGTCGGTCCGGTGGT
ATTGTTTCATTGAGCTTTACTGACAGTTGGAGCACGAGATGCAATCTTCG
GCAGTATCAATCAGGCCATTCAGCAAGTGGAGTTGTTGATACTACCACAG
CATAGACTTCGCCCTTCGTGTTCCCTATGGCTACTACAGCAAAGACATCC
ACAGCGTACATTCGCCCTTCGTGTTCCCTAGGGCTGCCAATTTTGGTCCA
AGCATATGTGCCGCTTTGTTTGGTGACTGCTGTCGACAACCTATGTAACT
TCGCGGAAATGTTCATCAGGTCAAGAAGATCATGATGGGCGAGACGGAGA
TGTATACATACCGGATCCATGATGGCACCATCTTCCACCCGGCGATACGC
AGCGGAAGCATTGCTGTTTTTGAGGCCGTGCTGGCTGGTGTGAACCAGCA
CCTGACCCCGGATGAGGTACATCATGGCCTGCAGGATTTTGGCGCGTTGA
GGCACGCGCAGTGTAAATTCTCATGTCACATACTTTGTACGAACTAAATA
CTATTCTCAGAGCGAGTGGCACGCTTCATTTTGCCCGAACATCGCTATTC
GCCGCCTCTTCGGGACGAGTCCGGTGGCATCCCTGGTTATCGAGTCCGAT
CTCTCTCTTCTTCTCGACATTTTCAGCGGGATCTGGTAATGCTTTTAGCG
AACCGGAAAAACCCGAGCATTCTGCACGTGGCAGCGGAGGGCGGGGACAA
GGGCATGTTCGAAGCTGTTTGCGCTGCTCTGAAGGATGGACCGGGCTCAG
AGGAGGTAGGAATTGCCAAACGCTTCTGCTGCCAGTTGCAAAGAAAGCTT
ACGTAGACAGACTATACGGCGCACACTTGTGGTAAACAATCCTTTAGAGA
ATGTATTCGGGCCGAGCCGGGATAACTCTGTCAACACCAGGTGCCATGTT
CAGCTCGACGCTGCAAGGGAGTTTTCAGTTGCTAGATGGCGCCAAGAAGA
GCTGCTGGAAACGTGGCCGCGTCTTATCGACTTCAAACAGGAGGTCTCTC
AACAGTATTCTAAGCGCCGCACGAAATGTTTGTTTTCTTTCGTAGTGTGC
TATTTTATCGTCATTTGTGACCGGGTATGTCTCATTCCCAAGCATCCGTC
CTTCCCCGTCATGCTGCCAGTTGGAGAAGTTGGTCGGATCCTCGCTGAGT
TTCGGGAGGAACATCCTCCACTTCGCGGCGAGCAGCGGGAGCAAGGAAAT
GTTCGAGGCCGTGCTGGCCATTGTGAAGGAACACCAGGTCTGACCGGTCT
CACCTTAGGTATCTGTACTCCGTTCGAAGAATGGGCTTTGATATTTTCGT
TGTGAGAACAGAAGGGACACGATCTATGTACGCCGACAAGGTGTTGATGT
TGAGAGACGCTCATCATGCACGGTATCGATTCCTGTGACAGTACCTACCG
TGTTCCGTTCTATACATACTTTTCAACTTTTTGGACTTGTATGATTCCAA
TGCCAGGTTAAACCGATGATGGTTCCGCTGGTGGACTCGGAGGAAGAACA
TGATGCCCCCGATGGCCGTCTGGGTGATGTTGCGAGTGTTCTGCACGTCG
CGGCCAGCAGCGGGAGCAAGGCTGCGTTTGAAGCCGTGCTGGTTGCTCTG
CAACAATATCTGACTCCGGATGAGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig71:776218..778893-

>mRNA_E-siliculosus-1a_M_contig71.15326.1 ID=mRNA_E-siliculosus-1a_M_contig71.15326.1|Name=mRNA_E-siliculosus-1a_M_contig71.15326.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig71:776218..778893- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGCAAGGACGTGTTTGACGATACTCTAGTGGTTCTGGAGAGCCGGCTGAC
CCACGAGGAGAGCAAGGACGTGTTTGACGATACTCTAGTGGTTCTGGAGA
GCCGGCTGACCCACGAGGAGGTCCAAAGGTCAATGAAAGTCATTAGCCAG
GGGCCGAAGCGGGAGAGCATCATGATGTCGGCGGCCGGCAGCGGAGATAA
GGAGACATGGAATGCCGTGTTGGCACAGCTTGAGAGGTCGATGAGTAAGA
CAGAGGTCCAAAGGTCAATGAAAGTCATTAGCCAGGGGCCGAAGCGGGAG
AGCATCATGATGTCGGCGGCCGGCAGCGGAGATAAGGAGACATGGAATGC
CGTGTTGGCACAGCTTGAGAGGTCGATGAGTAAGACAGAGGTCAAGAAGA
TCATGATGGGCGAGACGGAGATGTATACATACCGGATCCATGATGGCACC
ATCTTCCACCCGGCGATACGCAGCGGAAGCATTGCTGTTTTTGAGGCCGT
GCTGGCTGGTGTGAACCAGCACCTGACCCCGGATGAGGTCAAGAAGATCA
TGATGGGCGAGACGGAGATGTATACATACCGGATCCATGATGGCACCATC
TTCCACCCGGCGATACGCAGCGGAAGCATTGCTGTTTTTGAGGCCGTGCT
GGCTGGTGTGAACCAGCACCTGACCCCGGATGAGCGGGATCTGGTAATGC
TTTTAGCGAACCGGAAAAACCCGAGCATTCTGCACGTGGCAGCGGAGGGC
GGGGACAAGGGCATGTTCGAAGCTGTTTGCGCTGCTCTGAAGGATGGACC
GGGCTCAGAGGAGCGGGATCTGGTAATGCTTTTAGCGAACCGGAAAAACC
CGAGCATTCTGCACGTGGCAGCGGAGGGCGGGGACAAGGGCATGTTCGAA
GCTGTTTGCGCTGCTCTGAAGGATGGACCGGGCTCAGAGGAGTTGGAGAA
GTTGGTCGGATCCTCGCTGAGTTTCGGGAGGAACATCCTCCACTTCGCGG
CGAGCAGCGGGAGCAAGGAAATGTTCGAGGCCGTGCTGGCCATTGTGAAG
GAACACCAGTTGGAGAAGTTGGTCGGATCCTCGCTGAGTTTCGGGAGGAA
CATCCTCCACTTCGCGGCGAGCAGCGGGAGCAAGGAAATGTTCGAGGCCG
TGCTGGCCATTGTGAAGGAACACCAGGTTAAACCGATGATGGTTCCGCTG
GTGGACTCGGAGGAAGAACATGATGCCCCCGATGGCCGTCTGGGTGATGT
TGCGAGTGTTCTGCACGTCGCGGCCAGCAGCGGGAGCAAGGCTGCGTTTG
AAGCCGTGCTGGTTGCTCTGCAACAATATCTGACTCCGGATGAGGTTAAA
CCGATGATGGTTCCGCTGGTGGACTCGGAGGAAGAACATGATGCCCCCGA
TGGCCGTCTGGGTGATGTTGCGAGTGTTCTGCACGTCGCGGCCAGCAGCG
GGAGCAAGGCTGCGTTTGAAGCCGTGCTGGTTGCTCTGCAACAATATCTG
ACTCCGGATGAG
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